KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:04 2014 Check: 00 .. Name: ENSP00000475727/1-293 Len: 364 Check: 7501 Weight: 1.00 Name: ENSBTAP00000022819/1-293 Len: 364 Check: 6062 Weight: 1.00 Name: ENSTTRP00000000991/1-293 Len: 364 Check: 3941 Weight: 1.00 Name: bmy_00667T0/1-355 Len: 364 Check: 8497 Weight: 1.00 Name: BACU005154/1-266 Len: 364 Check: 3778 Weight: 1.00 // 1 50 ENSP00000475727/1-293 MTEDSQRNFR SVYYEKVGFR GVEEKKSLEI LLKDDRLDTE KLCTFSQRFP ENSBTAP00000022819/1-293 MTEDSQRNFR SVYYEKVGFR GVEEKKSLEI LLKDDRLDIE KLCTFSQRFP ENSTTRP00000000991/1-293 MTEDSQRNFR SVYYEKVGFR GVEEKKSLEI LLKDDCLDIE KLCTFSQRFP bmy_00667T0/1-355 MTEDSQRNFR SVYYEKVGFR GVEEKKSLEI LLKDDCLDIE KLCTFSQRFP BACU005154/1-266 MTEDSQRNFR SVYYEKVGFR GVEEKKSLEI LLKDDCLDVE KLCTFSQRFP 51 100 ENSP00000475727/1-293 LPSMYRALVW KVLLGILPPH HESHAKVMMY RKEQYLDVLH ALKVVRFVSD ENSBTAP00000022819/1-293 LPSMYRALVW KVLLGILPPH HESHVQVMTY RKEQYSDVLH ALKVIRFVSD ENSTTRP00000000991/1-293 LPSMYRALVW KVLLGILPPH HESHAQVMMY RKEQYSDVLH ALEVIRFISD bmy_00667T0/1-355 LPSMYRALVW KVLLGILPPH HESHAQVMMY RKAQYSDVLH ALEVIRFISD BACU005154/1-266 LPSMYRALVW KVLLGILPPH HESHAQVMMY RKEQYSDVLH ALEVIRFISD 101 150 ENSP00000475727/1-293 ATPQAEVYLR MYQLESGKLP RSPSFPLEPD DEVFLAIAKA MEEMVEDSVD ENSBTAP00000022819/1-293 ATPQSEVYLY MHRLESGKLP RSPSFPLEPE DEVFLAIAKA MEEMVEDSVD ENSTTRP00000000991/1-293 ATPQVEVYLY MHRLESGKLP RSPSFALEPE DEVFLAIAKA MEEMVEDSID bmy_00667T0/1-355 ATPQVEVYLY MHRLESGKLP RSPSFPLEPE DEVFLAIAKA MEEMVEDGID BACU005154/1-266 ATPQVEVYLY MHRLESGKLP RSPSFPLEPE DEVFLAIAKA MEEMVEDGID 151 200 ENSP00000475727/1-293 CYWITRRFVN QLNTKYRDSL PQLPKAFEQY LNLEDGRLLT HLRMCSAAPK ENSBTAP00000022819/1-293 CYWIMRCFVN QLNSKYRDTL PQLPKAFEQY LNLEDSRLLS HLKACCAVST ENSTTRP00000000991/1-293 CYWLTRCFVN QLNNKYRDFL PQLPKAFEQY LNLEDSRLLS HLKTSSAVSK bmy_00667T0/1-355 CYWLTRCFVN QLNNKYRDFL PQLPKAFEQY LNLEDSRLLS HLKTSSAVSK BACU005154/1-266 CYWLTRCFVN QLNNKYRDFL PQLPKAFEQY LNLEDSRLLS HLKASSAVSK 201 250 ENSP00000475727/1-293 LPYDLWFKRC FAGCLPESSL QRVWDKVVSG SCKILVFVAV EILLTFKIKV ENSBTAP00000022819/1-293 LPYELWFKKC FAGCLPESSL QRIWDKVVSG SCKILVFVAV EILLTFKIKV ENSTTRP00000000991/1-293 LPYDLWFKRC FAGCLPESSL QRVWDKVISG SCKILVFVAV EILLTFKIKV bmy_00667T0/1-355 LPYDLWFKRC FAG------- --VWDKVISG SCKILVFVAV EILLTFKIKV BACU005154/1-266 LPYDLWFKR- ---------- --VWDKVISG SCKILVFVAV EILLTFKIKV 251 300 ENSP00000475727/1-293 MALNSAEKIT KFLEN----- ---------- ---------- --IPQDSSDA ENSBTAP00000022819/1-293 MALNSAEKIT KFLEN----- ---------- ---------- --IPQDSSDA ENSTTRP00000000991/1-293 MALNGAEKIT KFLEN----- ---------- ---------- --IPQDSSDA bmy_00667T0/1-355 MALNSAEKIT KFLENRHSVV LRYKKQFSPE KVSSWSVDGS AVLWGQWSEQ BACU005154/1-266 TALNSAEKIT KFLEN----- ---------- ---------- ---------- 301 350 ENSP00000475727/1-293 IVSKAIDLWH KHCGTPVHSS ---------- ---------- ---------- ENSBTAP00000022819/1-293 IVSKAIDLWH KHCGTPVHSA ---------- ---------- ---------- ENSTTRP00000000991/1-293 IVSKAIDLWH KHCGTPVHSA ---------- ---------- ---------- bmy_00667T0/1-355 QVSNTLNQAK RGGNPPGQLG CDCEQGHRLM AQTLRDPGPL RLNMPDIVDS BACU005154/1-266 ---NTLNQAK RGGSKET--- ---------- ---------- ---------- 351 400 ENSP00000475727/1-293 ---------- ---- ENSBTAP00000022819/1-293 ---------- ---- ENSTTRP00000000991/1-293 ---------- ---- bmy_00667T0/1-355 LPGLPRGLFW DVIY BACU005154/1-266 ---------- ----