KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:05 2014 Check: 00 .. Name: ENSP00000381490/1-724 Len: 742 Check: 8770 Weight: 1.00 Name: ENSBTAP00000022821/1-621 Len: 742 Check: 1012 Weight: 1.00 Name: ENSTTRP00000003537/1-729 Len: 742 Check: 6099 Weight: 1.00 Name: bmy_07774T0/1-440 Len: 742 Check: 5417 Weight: 1.00 Name: BACU008021/1-654 Len: 742 Check: 2145 Weight: 1.00 // 1 50 ENSP00000381490/1-724 MLLFVEQVAS KGTGLNPNAK VWQEIAPGNT DATPVTHGTE SSWHEIAATS ENSBTAP00000022821/1-621 LLLFVAQVTS KGTGLNPNAK VWQEIPPGNT DATPVAHGTE SSWHETAATS ENSTTRP00000003537/1-729 -LIFEVQVTS KGTGLNPNAK VWQEIPPGNT DATPVTHGTE SSWHETAATS bmy_07774T0/1-440 ---------- ---------- ---------- ---------- ---------- BACU008021/1-654 MLLFVE-VTS KGTGLNPNAK VWQEIPPGST DATPVTHGTE SSWHETAATS 51 100 ENSP00000381490/1-724 GAHPE----- -GNAELSEDI CKEYEVMYSS SCETTRNTTG IEESTDGMIL ENSBTAP00000022821/1-621 GSLPE----- -GNRELADDM CKEYEVMY-S SCETTRNITG IEESTDGMIL ENSTTRP00000003537/1-729 GSHPEVFFFN TGNRELADDM CKEYEVMY-S SCETTRTTTG IEESTDGMIL bmy_07774T0/1-440 ---------- ---------- ---------- ---------- ---------- BACU008021/1-654 GAHPE----- -GNRELADDM CKEYEVMY-S SCETTRTTTG IEESTDGMIL 101 150 ENSP00000381490/1-724 GPEDLSYQIY DVSGESNSAV STEDLKECLK KQLEFCFSRE NLSKDLYLIS ENSBTAP00000022821/1-621 GPEDLNYQIY DVSGESNSAI STEELKECLK KQLEFCFSRE NLSKDLYLIS ENSTTRP00000003537/1-729 GPEDLSYQIY DVSGESNSAI STEELKECLK KQLEFCFSRE NLSKDLYLIS bmy_07774T0/1-440 ---------- ---------- ---------- ---------- ---------- BACU008021/1-654 GPEDLSYQIY DVS------- ---------- ---------- ---------- 151 200 ENSP00000381490/1-724 QMDSDQFIPI WTVANMEEIK KLTTDPDLIL EVLRSSPMVQ VDEKGEKVRP ENSBTAP00000022821/1-621 QMDSDQFVPI WTVANMEEIK KLTTDPDLIL EVLRSSPMVQ VDEKGEKVRP ENSTTRP00000003537/1-729 QMDSDQFIPI WTVANMEEIK KLTTDPDLIL EVLRSSPMVQ VDEKGEKVRP bmy_07774T0/1-440 ---------- ---------- ---------- ---------- ---------- BACU008021/1-654 ---------- ---------- ---------- ----ASPMVQ VDEKGEKVRP 201 250 ENSP00000381490/1-724 SHKRCIVILR EIPETTPIEE VKGLFKSENC PKVISCEFAH NSNWYITFQS ENSBTAP00000022821/1-621 SHKRCIVILR EIPETTPIEE VKALFKNENC PKVISCEFAH NSNWYITFQS ENSTTRP00000003537/1-729 SHKRCIVILR EIPETTPVEE VKALFKNENC PKVISCEFAH NSNWYITFQS bmy_07774T0/1-440 ---------- ---------- ---------- ---------- ---------- BACU008021/1-654 SHKRCIVILR EIPETTPVEE VKALFKNENC PKVISCEFAH NSNWYITFQS 251 300 ENSP00000381490/1-724 DTDAQQAFKY LREEVKTFQG KPIMARIKAI NTFFAKNGYR LMDSSIYSHP ENSBTAP00000022821/1-621 DTDAQQAFKY LREEVKTFQG KPIMARIKAI NTFFAKNGYR LMDSSMYSQP ENSTTRP00000003537/1-729 DTDAQQAFKY LREEVKTFQG KPIMARIKAI NTFFAKNGYR LMDSSMYSPP bmy_07774T0/1-440 ---------- ---------- ---------- ---------- -MDSSMYSPP BACU008021/1-654 DTDAQQAFKY LREEVKTFQG KPIMARIKAI NTFFAKNGYR LMDSSMYSPP 301 350 ENSP00000381490/1-724 IQTQAQYASP VFMQPVYNPH QQYSVYSIVP QSWSPNPTPY FETPLAPFPN ENSBTAP00000022821/1-621 IQTQAQYASP VFMQPVYNPH QQYSVYSIVP QSWSPNPAPY FETPLAPFPN ENSTTRP00000003537/1-729 IQTQAQYASP VFMQPVYNPH QQYSVYSIVP QSWSPNPTPY FETPLAPFPN bmy_07774T0/1-440 IQTQAQYASP VFMQPVYNPH QQYSVYSIVP QSWSPNPTPY FETPLAPFPN BACU008021/1-654 IQTQAQYASP VFMQPVYNPH QQYSVYSIVP QSWSPNPTPY FETPLAPFPN 351 400 ENSP00000381490/1-724 GSFVNGFNSP GSYKTN---- ------AAAM NMGRPFQKNR VKPQFRSSGG ENSBTAP00000022821/1-621 GSFVNGFNSP GSYKTNAAAA AAAAAAAAAV NMGRPFQKNR VKTHFR-SGG ENSTTRP00000003537/1-729 GSFVNGFNSP GSYKTN---- ------AAAV NMGRPFQKNR VKPHFR-SSG bmy_07774T0/1-440 GSFVNGFNSP GSYKTN---- -----AAAAV NMGRPFQKNR VKPHFR-SSG BACU008021/1-654 GSFVNGFNSP GSYKTN---- ---AAAAAAV NMGRPFQKNR VKPHFR-SGG 401 450 ENSP00000381490/1-724 SEHSTEGSVS LGDGQLNRYS SRNFPAERHN PTVTGHQEQT YLQKETSTLQ ENSBTAP00000022821/1-621 SEHSTEGSVS LGDGPLTRSG SRNFATERHN PAVTGHQEQS YLPKETPTLQ ENSTTRP00000003537/1-729 SEHSTEGSVS LGDGPLNRSG SRNFPTERHN PTVTGHQEQS YLPKETPTLQ bmy_07774T0/1-440 SEHSTEGSVS LTDGPLNRPG SRNFPTERHN PTVTGHQEQS YLPKETPTLQ BACU008021/1-654 SEHSTEGSVS LTDGPLNRSG SRNFPTERHN PTVTGHQEQS YLPKETPTLQ 451 500 ENSP00000381490/1-724 VEQNGDYGRG RRTLFRGRRR REDDRISRPH PSTAESKAPT PKFDLLASNF ENSBTAP00000022821/1-621 MEQNGDYGRG RRTLFRGRRR REDERIPRPH PSTAEAKVPT PKFDLLASNF ENSTTRP00000003537/1-729 MEQNGDYGRG XXXXXXXXXX XXXXXXXRPH PSTAEAKAPT PKFDLLASNF bmy_07774T0/1-440 MEQNGDYGRG RRTLFRGRRR REDERIPRPH PSTAEAKAPT PKFDLLASNF BACU008021/1-654 MEQNGDYGRG RRTLFRGRRR REDERIPRPH PSTAEAKAPT PKFDLLASNF 501 550 ENSP00000381490/1-724 PPLPGSSSRM PGELVLENRM SDVVKGVYKE KDNEELTISC PVPA-DEQTE ENSBTAP00000022821/1-621 PPLPGSSSRT PGELVLESRM SDVVKGVCKE KDNEEFRVSC PVPAEDGQTD ENSTTRP00000003537/1-729 PPLPGSSSRT PGELVLESRL SDVVKGVCKE KDKEELRVSC PVTAEDEQTD bmy_07774T0/1-440 PPLPGSSSRT PGELVLESRM SDVVKGVCKE KDKEELRVSC PVTAEDEQTD BACU008021/1-654 PPLPGSSSRT PGELVLDSRM SDVVKGVCKE KDKEELRVSC PVTAEDEQTD 551 600 ENSP00000381490/1-724 CTSAQQLNMS TSSPCAAELT ALSTTQQEKD LIEDSSVQKD GLNQTTIPVS ENSBTAP00000022821/1-621 CTSAQQLSMS PSPPCTAELS ALSTTQPEKD LVEDSTVQKD VPSQPTVPVS ENSTTRP00000003537/1-729 CTSAQQLSMS TSPPCTAELS ALSTTQQEKD LIEDSTVQKD VPNQTTIPVS bmy_07774T0/1-440 CTSAQQLNMS TSPPCTAELS ALSTTQQEKD LIEDSTVQKD VPNQTTIPVS BACU008021/1-654 CTSAQQLNMS TSPPCTAELS ALSTTQQEKD LIEDSTVQKD VPNQTTIPVS 601 650 ENSP00000381490/1-724 PPSTTKPSRA STASPCNNNI NAATAVALQE PRKLSYAEVC QKPPKEPSSV ENSBTAP00000022821/1-621 SPSTAKPSRT NTASPCNSNI SAAVAVALQ- ---------- ---------- ENSTTRP00000003537/1-729 SPSTAKPSRT NTASPCNSNI SAAVAVALQE PRKLSYAEVC QKPPKEPSPV bmy_07774T0/1-440 SPSTAKPSRT NTASPCNSNI SAAVAVALQE PRKLSYAEVC QKPPKEPSPV BACU008021/1-654 SPSTAKPSRT NTASPCNSNI SAAVAVALQE PRKLSYAEVC QKPPKEPSPV 651 700 ENSP00000381490/1-724 LVQPLRELRS NVVSPTKNED NGAPENSVEK PHEKPEARAS KDYSGFRGNI ENSBTAP00000022821/1-621 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003537/1-729 LVQPLRELRS NAVSPTKNEE NGAPEKSFEK QHEKPEARAS KDYSGFRGNA bmy_07774T0/1-440 LVQPLRELRS NAVSPTKNEE NGAPEKSFEK QHEKPEARAS KDYSGFRGNA BACU008021/1-654 LVQPLRELRS NAVSPTKNEE NGAPEKSFEK QHEKPEARAS KDYSGFRGNA 701 750 ENSP00000381490/1-724 IPRGAAGKIR EQRRQFSHRA IPQGVTRRNG KEQYVPPRSP K- ENSBTAP00000022821/1-621 ---------- ---------- ---------- ---------- -- ENSTTRP00000003537/1-729 IPRGAAGKIR EQRRQFGHRA IPQGVTRRNG KEQYVPPRSP KT bmy_07774T0/1-440 IPRGAAGKIR EQRRQFGHRA IPQGVTRRNG KEQYVPPRSP K- BACU008021/1-654 IPRGAAGKIR EQRRQFGHRA IPQGVTRRNG KEQYVPPRSP K-