KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:19:07 2014 Check: 00 .. Name: ENSP00000307599/1-1791 Len: 1927 Check: 5083 Weight: 1.00 Name: ENSBTAP00000022822/1-1783 Len: 1927 Check: 6765 Weight: 1.00 Name: bmy_01652T0/1-1708 Len: 1927 Check: 2635 Weight: 1.00 Name: BACU014615/1-1811 Len: 1927 Check: 7689 Weight: 1.00 // 1 50 ENSP00000307599/1-1791 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022822/1-1783 ---------- ---------- ---------- ---------- ---------- bmy_01652T0/1-1708 ---------- ---------- ---------- ---------- ---------- BACU014615/1-1811 MFKYMFSGSM INPFTEGSEG DQRHHMNRDG QGCRCEDLRV CVLLCRLSQR 51 100 ENSP00000307599/1-1791 ---------- ---------- ---------- ------MDDR CYPVIFPDER ENSBTAP00000022822/1-1783 ---------- ---------- ---------- ------MDDR CYPVIFPDGR bmy_01652T0/1-1708 ---------- ---------- ---------- ------MDDR CYPVIFPDAR BACU014615/1-1811 PHDMVLGEWN LRADSVIFYL PELSEDLLLV SAPRVKMDDR CYPVIFPDAR 101 150 ENSP00000307599/1-1791 NFRPFTSDSL AAIEKRIAIQ KEKKKSKDQT GEVPQPRPQL DLKASRKLPK ENSBTAP00000022822/1-1783 NFRPFTPDSL AAIKKRIAIQ KEKNKSKDRK AAECEPRPQL DLKVSRKLPK bmy_01652T0/1-1708 NFRPFTPDSL AAIKKRIAIQ KEKKKSKDQT AAEPQPRPQL DLKVSRKLPM BACU014615/1-1811 NFRPFTPDSL AAIKKRIAIQ KEKKKSKDQT AAEPQPRPQL DLKVSRKLPM 151 200 ENSP00000307599/1-1791 LYGDIPRELI GKPLEDLDPF YRNHKTFMVL NRKRTIYRFS AKHALFIFGP ENSBTAP00000022822/1-1783 LYGDIPRDLI AKPLEDLDPF YHNHKTFMVL NKKRTIYRFS AKRALFILGP bmy_01652T0/1-1708 LYGDIPHELI GKPLEDLDPF YRNHKTFMVL NKKRTIYRFS AKRAL----- BACU014615/1-1811 LYGDIPHELI GKPLEDLDPF YRNHKTFMVL NKKRTIYRFS AKRALFIFGP 201 250 ENSP00000307599/1-1791 FNSIRSLAIR VSVHS----- ---------- -----LFSMF IIGTVIINCV ENSBTAP00000022822/1-1783 FNSIRSLAIR ISVHS----- ---------- -----LFSMF IICTVIINCV bmy_01652T0/1-1708 ---------- ---------- ---------- ---------- ---------- BACU014615/1-1811 FNSIRSLAIR ISVHSYPFVA SFTKSSVAAL TALVTLFSMF IICTVIINCV 251 300 ENSP00000307599/1-1791 FMATGPAKNS NSNNTDIAEC VFTGIYIFEA LIKILARGFI LDEFSFLRDP ENSBTAP00000022822/1-1783 FMALAHQKSS IDVKTDHAEY VFLGIYLFEA LVKILARGFI LDEFSFLRDP bmy_01652T0/1-1708 ---------- ---------Y VFTGIYIFEA LVKILARGFI LDEFSFLRDP BACU014615/1-1811 FMAMTRGKDS INIDTESAEY VFTGIYIFEA LVKILARGFI LDEFSFLRDP 301 350 ENSP00000307599/1-1791 WNWLDSIVIG IAIVSYIP-- -GITIKLLPL RTFRVFRALK AISVVSRLKV ENSBTAP00000022822/1-1783 WNWLDSIVIA TAFVSYSPYI NDSSFSLSSL RTFRVFRALK AISVISGLKV bmy_01652T0/1-1708 WNWLDSIVIA TAFVSYSPYI KGSSISLSSL RTFRVFRALK AISVISGLKV BACU014615/1-1811 WNWLDSIVIA TAFVSYSPYI KGSSISLSSL RTFRVFRALK AISVISGLKV 351 400 ENSP00000307599/1-1791 IVGALLRSVK KLVNVIILTF FCLSIFALVG QQLFMGSLNL KCISRDCKNI ENSBTAP00000022822/1-1783 IVGALLHSVK KLVDVMILAL FCLSIFALVG QQLFMGNLRY KCVSNSCKHH bmy_01652T0/1-1708 IVGALLRSVK RLVDVMILTL FCLSIFALVG QQLFMGNLNQ KCVRKDC--- BACU014615/1-1811 IVGALLRSVK RLVDVMILTL FCLSIFALVG QQLFMGNLNQ KCVRKDC--- 401 450 ENSP00000307599/1-1791 SNPEAYDHCF EKKENSPEFK MCGIWMGNSA CSIQYECKHT KINPDYNYTN ENSBTAP00000022822/1-1783 YQDYYQDYCF KKEEST-EFK MCGMWMGNRA CPEQYECRDS HKNPDYNYTN bmy_01652T0/1-1708 -DSDYKDYCF EKKDST-EFR ICGTWMESGA CSEQFECKHT NXNPDYNYTN BACU014615/1-1811 -DSDYKDYCF EKKDST-EFR ICGTWMESGA CSEQFECKHT NKNPDYNYTN 451 500 ENSP00000307599/1-1791 FDNFGWSFLA MFRLMTQDSW EKLYQQTLRT TGLYSVFFFI VVIFLGSFYL ENSBTAP00000022822/1-1783 FDNFGWSFLA MFRLMTQDSW EKLYRQTVRT SGLISVLFFV VVIFLGSFYL bmy_01652T0/1-1708 FDNFGWSFLA VFRLMTQDSW EKLYQQTLRX SGLYSVFFFV VVIFLGSFYL BACU014615/1-1811 FDNFGWSFLA VFRLMTQDSW EKLYQQTLRT SGLYSVFFFV VVIFLGSFYL 501 550 ENSP00000307599/1-1791 INLTLAVVTM AYEEQNKNVA AEIEAKEKMF QEAQQLLKEE KEALVAMGID ENSBTAP00000022822/1-1783 VNLTLAVVTM TYEEQNKNVA AETEAKEKMF QEAQQLLKEE KEALVAMGID bmy_01652T0/1-1708 INLTLAVVTM AYEEQNKNVA AETEAKEKMF QEAQQLLKEE KEALVAMGID BACU014615/1-1811 INLTLAVVTM AYEEQNKNVA AETEAKEKMF QEAQQLLKEE KE-------- 551 600 ENSP00000307599/1-1791 RSSLTSLETS YFTPKKRKLF GNKKRKSFFL RESGKDQPPG SDSDEDCQKK ENSBTAP00000022822/1-1783 RSSLNSLEAS SFSPKKRKLF GSKKRKSFFL RKSGKDQIPG SDSDEDSSKK bmy_01652T0/1-1708 RSSLNSLEAS SFSLKKRKLF GNKKRKSFFL RKSGKDQVPG LDSDEDSSKK BACU014615/1-1811 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000307599/1-1791 ---------- ---------P QLLEQTKRLS QNLSLDHFDE HGDPLQRQRA ENSBTAP00000022822/1-1783 ---------- ---------P HLLEQTKRLS QNLSVDHCDE HGDSFQRQRA bmy_01652T0/1-1708 ASFGQGIDDT LALFRGTGQP HLLEQTKRLS QNLSVDHCDE HGDPFQRQRA BACU014615/1-1811 ---------- ---------P HLLEQTKRLS QNLSVDHCDE HGDPFQRQRA 651 700 ENSP00000307599/1-1791 LSAVSILTIT MKEQEKSQEP CLPCGENLAS KYLVWNCCPQ WLCVKKVLRT ENSBTAP00000022822/1-1783 LSAVSILTIT MQEQEKSQEP CLPCGENLAS RYLVWDCSPW WLDIKKVLRT bmy_01652T0/1-1708 LSAVSILTIT MHEQEKSQEP CLPCGENLAS KYLVWDCSPR WLCIKKALRT BACU014615/1-1811 LSAVSILTIT MHEQEKSQEP CLPCGENLAS KYLVWDCSPR WLCIKKALRT 701 750 ENSP00000307599/1-1791 VMTDPFTELA ITICIIINTV FLAMEHHKME ASFEKMLNIG NLVFTSIFIA ENSBTAP00000022822/1-1783 VMTDPFTELA ITICIIINTV FLAMEHYKMD QNFENILYTG NLVFTGIFMA bmy_01652T0/1-1708 MMTDPFTELA ITICIIINTL FLAMEHYKMD QSFENMLYTG NLVFTGIFMA BACU014615/1-1811 MMTDPFTELA ITICIIINTL FLAMEHYKMD QSFENMLYTG NLVFTGIFMA 751 800 ENSP00000307599/1-1791 EMCLKIIALD PYHYFRRGWN IFDSIVALLS FADVM--NCV LQKRSWPFLR ENSBTAP00000022822/1-1783 EMCLKIIALD PYHYFRRGWN IFDSVVALLS LADVILNHIV SGK-SWISFR bmy_01652T0/1-1708 EMCLKIIALD PYHYFRRGWN IFDSIVALLS FAEVIINSMC PGKQSCMSLR BACU014615/1-1811 EMCLKIIALD PYHYFRRGWN IFDSIVALLS FAE------- ---------- 801 850 ENSP00000307599/1-1791 SFRVLRVFKL AKSWPTLNTL IKIIGNSVGA LGSLTVVLVI VIFIFSVVGM ENSBTAP00000022822/1-1783 SLRVLRVFKL AKSWPTLSTL IKIIGHSVGA LGNLTVVLAI VVFIFSVVGM bmy_01652T0/1-1708 SLRVLRVFKL AKSWPTLNTL LKIIGHSVGA LGNLTVVLAI VVFIFSVVGM BACU014615/1-1811 ----LRVFKL AKSWPTLNTL LKIIGHSVGA LGNLTVVLAI VVFIFSVVGM 851 900 ENSP00000307599/1-1791 QLFGRSFNSQ KSPKLCNPTG PTVSCLRHWH MGDFWHSFLV VFRILCGEWI ENSBTAP00000022822/1-1783 QLFGSKFNNR KNN--LKSCD PEVLCLRRWH MGDFYHSFLV VFRILCGEWI bmy_01652T0/1-1708 QLFGSKFNCI KSN--SKXHD PAVSCLRRWH MGDFYHSFLV VFRILCGEWI BACU014615/1-1811 QLFGSKFNCI KSN--SKSHD PAVPCLRRWH MGDFYHSFLV VFRILCGEWI 901 950 ENSP00000307599/1-1791 ENMWECMQEA NASSSLCVIV FILITVIGKL VVLNLFIALL LNSFSNEERN ENSBTAP00000022822/1-1783 ENMWECMQEA N--PTLCVIV FLSIMVIGKL VVLNLFIALL LNSFSNEERN bmy_01652T0/1-1708 ENMWECMQEA N--QALCITV FLLIMVIGKL VVLNLFIALL LNSFSNEERD BACU014615/1-1811 ENMWECMQEA N--QALCIIV FLLIMVIGKL VVLNLFIALL LNSFSNEERD 951 1000 ENSP00000307599/1-1791 GNLEGEARKT KVQLALDRFR RAFCFVRHTL EHFCHKWCRK QNLPQQKEVA ENSBTAP00000022822/1-1783 GHLEGKVKKT KIQIALDRFC RAFCFVIHTL EHFFRKHCRK RHLSKQKEVT bmy_01652T0/1-1708 GHLEGEVRKT KVQLALDRFC XAFCFVIYTL EHFCTKWCRR QHLPKQKEVT BACU014615/1-1811 GHLEGEVRKT KVQLALDRFC RAFCFVMYTL EHFCTKWCRR QHLPKQKEVT 1001 1050 ENSP00000307599/1-1791 GGCAAQSKDI IPLVMEMKRG SETQEELGIL TSVPKTLGVR HDWTWLAPLA ENSBTAP00000022822/1-1783 EDPGGKIKDI IPLVTGMRKG PEIWEEFGVL TSVPMAL--- YDRTWLAPLA bmy_01652T0/1-1708 EGPKAESKGV IPLVTEMRKC PETWEEFGVL TSAPKTLSVG HDRTWLAPLA BACU014615/1-1811 EGPEAESKGV IPLVTEMRKG PETWEEFGVL TSAPKTLSVG HDRTWLAPLA 1051 1100 ENSP00000307599/1-1791 EEEDDVEFSG EDNAQRITQP EPEQ--QAYE LHQENKKPTS QRVQSVEIDM ENSBTAP00000022822/1-1783 EEEDDAEPPG EDKAQAVTQP EAGK--QASE VHQKSKDLTS PGIQSVEIDL bmy_01652T0/1-1708 EEEDDAESPG EDKAQPVTQP EAGKQCQASE LHQKTKEPTS PGAQSVEMDI BACU014615/1-1811 EEEDDAESPG EDKAQPVTQP EAGKQCQASE LHQKTKEPTS PGAQSVEMDI 1101 1150 ENSP00000307599/1-1791 FSEDEPHLTI QDPRKKSDVT SILSECSTID LQDGFGWLPE MVPKKQPERC ENSBTAP00000022822/1-1783 FSGDDPPMSI QNLRKKSDAA SVLSECSTIG PQDPFMRVLE MIPKKEPERC bmy_01652T0/1-1708 FSEDDPYLSX QNPRKKSDAT SVLSECSTTG PQDPFRRVLE MVPKKEPERC BACU014615/1-1811 FSEDDPYLSI QNPRKKSDAT SVLSECSTTG PQDPFRRVLE MVPKKEPERC 1151 1200 ENSP00000307599/1-1791 LPK-GFGCCF PCCSVDKRKP PWVIWWNLRK TCYQIVKHSW FESFIIFVIL ENSBTAP00000022822/1-1783 LPE-GLNCCS LCHTVDKRKS SWITWWSLRK ICYQIVKHSW FESFIIFVIL bmy_01652T0/1-1708 LPKGGVNLYS PTTRVEN--- ---------- ---------- LENF----PR BACU014615/1-1811 LPK-GLDCCS PCCTVDKRKS PWIIWWKLRK TCYQIVKHSW FESFIIFVIL 1201 1250 ENSP00000307599/1-1791 LSSGALIFED VHLENQPKIQ ELLNCTDIIF THIFILEMVL KWVAFGFGKY ENSBTAP00000022822/1-1783 LSSGALVFED INLDKQPKIQ ELLKCTDTIF TYIFILEMGL KWVAFGFRKY bmy_01652T0/1-1708 KPTGPV-FED IYLGTQPKIQ AILNCTDSIF TYIFILEMGL KWVAFGFRKY BACU014615/1-1811 LSSGALVFED IYLGTQPKIQ AILNCTDSIF TYIFILEMGL KWVAFGFRKY 1251 1300 ENSP00000307599/1-1791 FTSAWCCLDF IIVIVSVTTL INLMELKSFR TLRALRPLRA LSQFEGMKVV ENSBTAP00000022822/1-1783 FTSVWCWLDF VIVIVSVTSL IDLMGLKSFR ILRALRPLRA LSQFEGMKVV bmy_01652T0/1-1708 FTSAWCWLDF IIVIVSVTSL IDLKVLKSFR ILRALRPLRA LSQFEGMKVV BACU014615/1-1811 FTSAWCWLDF IIVIVSVTSL IDLKVLKSFR ILRALRPLRA LSQFEGMKVV 1301 1350 ENSP00000307599/1-1791 VNALIGAIPA ILNVLLVCLI FWLVFCILGV YFFSGKFGKC INGTD--SVI ENSBTAP00000022822/1-1783 VYALIGAIPA ILNVLLVCLI FWLIFCILGV SLFSGRFGRC VNATDVKSVI bmy_01652T0/1-1708 VNALIGAIPA ILNVLLVCLI FWLIFCILGV SLFSGKFGRC VNVTDGNSVI BACU014615/1-1811 VNALIGAIPA ILNVLLVCLI FWLIFCILGV SLFSGKFGRC VNVTDGNSVI 1351 1400 ENSP00000307599/1-1791 NYTIITNKSQ CESGNFSWIN QKVNFDNVGN AYLALLQVAT FKGWMDIIYA ENSBTAP00000022822/1-1783 DYNIVANRNQ CESGHFYWDT PDVNFDNVLM AYLALLQVAT FKGWMDIMYA bmy_01652T0/1-1708 NYNIVANRSQ CESGNFSWFT LKVNFDNVGM AYLALLQVAT FKGWMDIMYA BACU014615/1-1811 NYNIVANRSQ CESGNFSWFT LKVNFDNVGM AYLALLQVAT FKGWMDIMYA 1401 1450 ENSP00000307599/1-1791 AVDSTEKEQQ PEFESNSLGY IYFVVFIIFG SFFTLNLFIG VIIDNFNQQQ ENSBTAP00000022822/1-1783 AVDSTEEGQQ PQFEARSSMY LYFVVFIIFG SFFTLNLFTG VIIDNFNQQQ bmy_01652T0/1-1708 AVDSRGEGQQ PRFEENSLMY VYFVVFIIFG SFFTLNLFIG ---------- BACU014615/1-1811 AVDSRGEGQQ PRFEENSLMY VYFVVFIIFG SFFTLNLFIG VIIDNFNQQQ 1451 1500 ENSP00000307599/1-1791 KKLGGQDIFM TEEQKKYYNA MKKLGSKKPQ KPIPRPLNKC QGLVFDIVTS ENSBTAP00000022822/1-1783 KKISGQDVFL TEEQKKYYNA MKKLGSKKPQ RPIPRPQNKC QGFVFDLVTH bmy_01652T0/1-1708 ----GQDIFL TEEQKKYYNA MKKLGSKRPQ RPIPRPLNKC QGLVFDLVTH BACU014615/1-1811 KKISGQDIFL TEEQKKYYNA MKKLGSKKPQ RPIPRPLNKC QGLVFDLVTH 1501 1550 ENSP00000307599/1-1791 QIFDIIIISL IILNMISMMA ESYNQPKAMK SILDHLNWVF VVIFTLECLI ENSBTAP00000022822/1-1783 QVFDIIIIIL ILLNMLSMMA ETHKQSETMK HLLESLNMAF VVIFAIECFI bmy_01652T0/1-1708 QVFDIIIIIL IFLNMVSMMA ESYGQSKAME LFLERLNLAF VVVFTIECLI BACU014615/1-1811 QVFDIIIIIL IFLNMVSMMA ESYGQSKAME LFLERLNLAF VVVFTIECLI 1551 1600 ENSP00000307599/1-1791 KIFALRQYYF TNGWNLFDCV VVLLSIVSTM ISTLENQEHI PFPPTLFRIV ENSBTAP00000022822/1-1783 KIFALRQYYF ANGWNLFDCV IVLLSIVSSV VSALKTQAQI PFPPTLFRMV bmy_01652T0/1-1708 KIFALRQYYF ISGWNLFDCV ILVISIVSTM VSALKTQAHI PFPPTLFRIV BACU014615/1-1811 KIFALRQYYF ISGWNLFDCV IVVISIVSTM VSALKTQAHI PFPPTLFRIV 1601 1650 ENSP00000307599/1-1791 RLARIGRILR LVRAARGIRT LLFALMMSLP SLFNIGLLLF LIMFIYAILG ENSBTAP00000022822/1-1783 RLVRIGRILR LVRAARRIRT LLFALMMSLP SLFNIGLLLF LVMFIYAIFG bmy_01652T0/1-1708 RLARIGRILR LVRAARGIRT LLFALMMSLP SLFNIGLLLF LVMFIYAIFG BACU014615/1-1811 RLARIGRILR LVRAARGIRT LLFALMMSLP SLFNIGLLLF LVMFIYAIFG 1651 1700 ENSP00000307599/1-1791 MNWFSKVNPE SGIDDIFNFK TFASSMLCLF QISTSAGWDS LLSPMLRSKE ENSBTAP00000022822/1-1783 MNSFRKVKEE SGIDDIFNFQ TFTSSMLCLF QITTTAGWDA LLSPMLKSNK bmy_01652T0/1-1708 MNCFCKVKEE SGIDDIFNFK TFKGSMLCLF QITTSAGWDA LLSPMLQSKD BACU014615/1-1811 MNCFCKVKEE SGIDDIFNFK TFKGSMLCLF QITTSAGWDA LLSPMLQSKD 1701 1750 ENSP00000307599/1-1791 SCNSSSENCH LPGIATSYFV SYIIISFLIV VNMYIAVILE NFNTATEESE ENSBTAP00000022822/1-1783 SCDPKTESCH LSTIAIIYFV TYIIISSLIV VNMYIAVILE NFNVATEESE bmy_01652T0/1-1708 SCNPKLENCH LSAIAITYFV SYIIISFLIV VNMYIAVILE NFNIATEESE BACU014615/1-1811 SCNPKLENCH LSAIAITYFV SYIIISFLIV VNMYIAVILE NFNIATEESE 1751 1800 ENSP00000307599/1-1791 DPLGEDDFDI FYEVWEKFDP EATQFIKYSA LSDFADALPE PLRVAKPNKY ENSBTAP00000022822/1-1783 DPLGEDDFEM FYEVWEKFDP EATQFIKYSA LSDFADALPE PLRVAKPNKY bmy_01652T0/1-1708 DPLSEDDFEI FYEVWEKFDP EATQFIRYSA LSDFADALPE PLRVAKPNKY BACU014615/1-1811 DPLSEDDFEI FYEVWEKFDP EATQFIRYSA LSDFADALPE PLRVAKPNKY 1801 1850 ENSP00000307599/1-1791 QFLVMDLPMV SEDRLHCMDI LFAFTARVLG GSDGLDSMKA MMEEKFMEAN ENSBTAP00000022822/1-1783 QFLVMDLPMV SGERLHCLDI LFAFTTRVLG ESSGLDSMKA AIEEKFMEAN bmy_01652T0/1-1708 QFLVMDLPMV SGDRLHCLDI LFAFTARVLG ESSGLDSMKA VMEEKFMEAN BACU014615/1-1811 QFLVMDLPMV SGDRLHCLDI LFAFTARVLG ESSGLDSMKA VMEEKFMEAN 1851 1900 ENSP00000307599/1-1791 PLKKLYEPIV TTTKRKEEER G-AAIIQKAF RKYMMKVTKG DQGDQNDLEN ENSBTAP00000022822/1-1783 PFKKLYEPIV TTTKRNEEER CAAAVIQKAF RKYMLKT--- ----RCTLKD bmy_01652T0/1-1708 PFKKLYEPIV TTTKRKEEER C-AAVIQKAF RKYMMKT--- ----KCTLED BACU014615/1-1811 PFKKLYEPIV TTTKRKEEER C-AAVIQKAF RKYMMKT--- ----KCTLED 1901 1950 ENSP00000307599/1-1791 GPHSPLQTLC NGDLSSFGVA KGKVHCD ENSBTAP00000022822/1-1783 RPHSTLQTLS NGDLPSSGVA EGKVHYD bmy_01652T0/1-1708 RPHSPLQTLC NGDLSSSGVA EGKVHYD BACU014615/1-1811 RPHSPLQTLC NGDLSSSGVA EGKVHYD