KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:10 2014 Check: 00 .. Name: ENSP00000450040/1-573 Len: 595 Check: 9962 Weight: 1.00 Name: ENSTTRP00000013486/1-338 Len: 595 Check: 8259 Weight: 1.00 Name: ENSBTAP00000022852/1-572 Len: 595 Check: 4661 Weight: 1.00 Name: bmy_05907T0/1-568 Len: 595 Check: 993 Weight: 1.00 Name: BACU006310/1-547 Len: 595 Check: 5475 Weight: 1.00 // 1 50 ENSP00000450040/1-573 --MARAVGPE RRLLAVYTGG TIGMRSEL-G VLVPGTGLAA ILRTLPMFHD ENSTTRP00000013486/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022852/1-572 --MARAAGPE RRLLAVYTGG TIGMRSER-G VLVPGRGLAA VLKMLPMFHD bmy_05907T0/1-568 GLAPSEEGGG RCWGCGHPPL TPPPRPTLPA VLVPGRGLAA VLRTLPMLHD BACU006310/1-547 ---------- ---------- ---------- ---------- ------MLHD 51 100 ENSP00000450040/1-573 EEHARARGLS EDTLVLPPAS ---RNQRILY TVLECQPLFD SSDMTIAEWV ENSTTRP00000013486/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022852/1-572 EEHARARGLP EDTLVLPPAS ---PDQRVIY TVLECQPLFD SSDMTITEWV bmy_05907T0/1-568 EGHAQACGLP EDTLVLPPAS PACPDQRVMY TVLECQPLFD SSDMTITEWV BACU006310/1-547 EGHARACGLP EDTLVLPPAS PACPDQRVMY TVLECQPLFD SSDMTITEWV 101 150 ENSP00000450040/1-573 CLAQTIKRHY EQYHGFVVIH GTDTMAFAAS MLSFMLENLQ KTVILTGAQV ENSTTRP00000013486/1-338 -------RHY GQYHGFVVIH GTDTMAFAAS VLSFMLENLQ KTVILTGAQV ENSBTAP00000022852/1-572 QIAQTIESHY ARYDGFVVIH GTDTMAFAAS VLSFVLENLQ KTVILTGAQV bmy_05907T0/1-568 QIAQTIERHY GQYHGFVVIH GTDTMAFAAS VLSFMLENLQ KTVILTGAQV BACU006310/1-547 QIAQTIERHY GQYHAFVVIH GTDTMAFAAS VLSFMLENLQ KTVILTGAQV 151 200 ENSP00000450040/1-573 PIHALWSDGR ENLLGALLMA GQYVIPEVCL FFQNQLFRGN RATKVDARRF ENSTTRP00000013486/1-338 PIHALWNDGR ENLLGALLLA GQYVIPEVCL FFQNQLFRGN RVTKVDTRRF ENSBTAP00000022852/1-572 PIHALWNDGR ENLLGALLLA GQYVIPEVCL FFQNQLFRGN RVTKVDARRF bmy_05907T0/1-568 PIHALWNDGR ENLLGALLLA GQYVIPE--- ---NQLFRGN RVTKVDTRRF BACU006310/1-547 PIHALWNDGR ENLLGALLLA GQYVIPEVCL FFQNQLFRGN RATKVDTRRF 201 250 ENSP00000450040/1-573 AAFCSPNLLP LATVGADITI NRELVRKVDG KAGLVVHSSM EQDVGLLRLY ENSTTRP00000013486/1-338 AAFCSPNLPP LATVGADVTX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022852/1-572 AAFCSPNLPP LATVGADVTI SQELVRRVRG QGRLVVHSSM ERNVGLLRLY bmy_05907T0/1-568 AAFCSPNLPP LATVGADVTI NRELVRRVRG QGRLVVHSSM ERDVGLLRLY BACU006310/1-547 AAFCSPHLPP LATVGADVTI NRELVRRVRG QGRLVVHSSM ERDVGLLRLY 251 300 ENSP00000450040/1-573 PGIPAALVRA FLQPPLKGVV METFGSGNGP TKPDLLQELR VATERGLVIV ENSTTRP00000013486/1-338 XXXXXXXVRV FLQPPLKGVV LETFGSGNGP TKPDLLQELR EAAERGLVIV ENSBTAP00000022852/1-572 PGIPASLVRA FLQPPMKGVV METFGSGNGP TKPDLLQELR AAAERGLIIV bmy_05907T0/1-568 PGIPATLVRV FLQPPLKGVV LETFGSGNGP TKPDLLQELR VAAERGLVIV BACU006310/1-547 PGVPASLVRV FLQPPLKGVV METFGSGNGP TKPDLLQELR AAAERGLIIV 301 350 ENSP00000450040/1-573 NCTHCLQGAV TTDYAAGMAM AGAGVISGFD MTSEAALAKL SYVLGQPGLS ENSTTRP00000013486/1-338 NCTHCLQGAV TSDYGAGTAL AGAGTISGSD MTSEAALAKL SYVLGLPGLS ENSBTAP00000022852/1-572 NCTHCLQGAV TSDYGAGMAL SGSGTVSGFD MTSEAALAKL SYVLGLPGLS bmy_05907T0/1-568 NCTHCLQGAV TSDYGAGTAL AGAGTISGSD MTSEAALAKL SYVLGLPGLS BACU006310/1-547 NCTHCLQGAV TSDYGAGTAL AGAGTVSGSD MTSEAALAKL SYVLGLPGLS 351 400 ENSP00000450040/1-573 LDVRKELLTK DLRGEMTPPS VEERRPSLQG NTLGGGVSWL LSLSGSQEAD ENSTTRP00000013486/1-338 LDGRKELLAR DLRGEMTLPA TDELRPSLRD STLGRGVAQL LSL--SQEAE ENSBTAP00000022852/1-572 LDGRKELLAR DLRGEMTPPT VDEPRPSLRG GVLGRGVAQL LSL--RQEAD bmy_05907T0/1-568 LDGRKELLAR DLRGEMTPPA ADELRPSLRG SALGRGVAQL LGL--SQEAD BACU006310/1-547 LDGRKELLAR DLRGEMTPPA VDELRPSLRG STLGRGVAQL LGL--SQEAD 401 450 ENSP00000450040/1-573 ALRNALVPSL ACAAAHAGDV EALQALVELG SDLGLVDFNG QTPLHAAARG ENSTTRP00000013486/1-338 DVRDALVPSL ACAAAHAGDL EALQVLAELG SDLSLEDFGG QTPLHSA--- ENSBTAP00000022852/1-572 EVWDALVPSL ACAAAYVGDL EALQVLVELG SDRSLEDFSG QTPLHAAARA bmy_05907T0/1-568 DVRDALAPSL ACAAAHAGDL EALQALAELG SDLSLEDFGG QTPLHSAARG BACU006310/1-547 DVRDALAPSL ACAAAHAGDL EALQALAELG SDLSLEDFGG QTPLHSAARG 451 500 ENSP00000450040/1-573 GHTEAVTMLL QRGVDVNTRD TDGFSPLLLA VRGRHPGVIG LLREAGASLS ENSTTRP00000013486/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022852/1-572 GQAGAVTMLL QRGLDVNARD KGGLSPLLLA VGGRHRDVIG LLRAAGACLS bmy_05907T0/1-568 GQAGVVTMLL QRGLDVNARD KDGLSPLLLA VRGRHQGVIG LLRAAGACLS BACU006310/1-547 GQAGVVTMLL QRGLDVNARD KDGLSPLLLA VRGRHQGVIG LLRAAGACLS 501 550 ENSP00000450040/1-573 TQELEEAGTE LCRLAYRADL EGLQVWWQAG ADLGQPGYDG HSALHVAEAA ENSTTRP00000013486/1-338 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022852/1-572 PQELEDSGTE LCRLASRADC EGLRAWGQAG ADLRQPGYDG RSALHVAEVA bmy_05907T0/1-568 PQELEDSGTE LCRLASRADC EGLRAWWQAG ADLRQPGYDG RSALHVAEAA BACU006310/1-547 PQELEDLGTE LCRLASRADC EGLRAWWQAG ADLKQPGYDG RSALHVAEAA 551 600 ENSP00000450040/1-573 GNLAVVAFLQ SLEGAVGAQA PCPEVLPGV- ---------- ----- ENSTTRP00000013486/1-338 ---------- ---------- ---------- ---------- ----- ENSBTAP00000022852/1-572 GNLEVVALLQ NLRGGAGDQA PGP--PPGTP GP-------- ----- bmy_05907T0/1-568 GNLEVVALLQ SLQGGVGDQA LGPAAP---- ---------- ----- BACU006310/1-547 GNLEVVALLQ SLQGGVGDQA LGPVSPPTPC GVGPGGDCVL GTEPV