KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:11 2014 Check: 00 .. Name: ENSP00000289081/1-558 Len: 570 Check: 5108 Weight: 1.00 Name: ENSBTAP00000022853/1-568 Len: 570 Check: 8693 Weight: 1.00 Name: bmy_11435T0/1-327 Len: 570 Check: 2110 Weight: 1.00 Name: BACU006705/1-288 Len: 570 Check: 1824 Weight: 1.00 Name: ENSTTRP00000005822/1-562 Len: 570 Check: 8569 Weight: 1.00 // 1 50 ENSP00000289081/1-558 MAQDSVDLSC DYQFWMQKLS VWDQASTLET QQDTCLHVAQ FQEFLRKMYE ENSBTAP00000022853/1-568 MAEDSAGLPS NYQFWMQKLS VWTQASTLET QRDICLHLPQ FQEFLRRMYE bmy_11435T0/1-327 MGEEPLE--- ---------- --ENSHRMAV NSQQC----- ---------- BACU006705/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005822/1-562 MAQDSVGLPS DFQFWMRKLS VWDQASTLET QQDTCLHLPQ FQEFLRQLYE 51 100 ENSP00000289081/1-558 ALKEMDSNTV IERFPTIGQL LAKACWNPFI LAYDESQKIL IWCLCCLINK ENSBTAP00000022853/1-568 TLKEMDSNAI IERFPTICQL LAKSCWSPFI LAYDESPKIL IWCLCCLIKK bmy_11435T0/1-327 ------GDAL TPRMQFIGS- ---------- ---------- ---------- BACU006705/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005822/1-562 ALKEMDSSAI IERFPTVGQL LAKTCWNPFI LAYDESQKIL IWCLCCLIKK 101 150 ENSP00000289081/1-558 EPQNSGQSKL NSWIQGVLSH ILSALRFD-K EVALFTQGLG YAPIDYYPGL ENSBTAP00000022853/1-568 DPQNSRESKL NSWTRRLLSH IVSTSRFDIK EVGLFNQVLG YAPTDYYPGL bmy_11435T0/1-327 ---------- ---------- ---------- ---------- -------PGQ BACU006705/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005822/1-562 DPQNSGESKL NSWTRGLLSH ILSTFRFNIK EVDLFTQVLG YAPTDYYPGL 151 200 ENSP00000289081/1-558 LKNMVLSLAS ELRENHLNGF NTQRRMAPER VASLSRVCVP LITLTDVDPL ENSBTAP00000022853/1-568 LKNMVLSLVS ELRENHLNGF SSQRRMSPER VRSLSRICVP LLTLPDFEPL bmy_11435T0/1-327 HRVLTL---- ---------- ---------- ---------- ---------- BACU006705/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005822/1-562 LKNMVLSLVS ELRENHLNGF NTQRRMAPER VRSLSRVCVP LVTLPDFEPL 201 250 ENSP00000289081/1-558 VEALLICHGR EPQEILQPEF FEAVNEAILL KKISLPMSAV VCLWLRHLPS ENSBTAP00000022853/1-568 VEALLTYHGH EPQEVLCPEF FDAVNEAFLL KKISLPTSAI LCLWLRHLPS bmy_11435T0/1-327 ---------- ---------- ---------- ---------- ---------- BACU006705/1-288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005822/1-562 VEALLTYHGH EPQEVLWPEF CDAVNEAFLL KKISLPASAI LCLWLRHLPS 251 300 ENSP00000289081/1-558 LEKAMLHLFE KLISSERNCL RRIECFIKDS SLP-QAACHP AIFRVVDEMF ENSBTAP00000022853/1-568 LENTMLHLLE KLISSERNSL RRIKCFMKDS LLPEAAACHP AIFRVVDEIF bmy_11435T0/1-327 ---------- ---------- --------DQ VLEPAAACHP AVFRVVDEMF BACU006705/1-288 ----MLRLFE KLMSSERNFL KRIECFMKDS LLP-AAACHP AIFRVVDEMF ENSTTRP00000005822/1-562 LENTMLHLFE KLISSERNFL RRIECFMKDS LLP-AAACHP AIFRVVDEMF 301 350 ENSP00000289081/1-558 RCALLETDGA LEIIATIQVF TQCFVEALEK ASKQLRFALK TYFPYTSPSL ENSBTAP00000022853/1-568 RSALLETDGA PEVLAGLQVF TRCFVEALEK ENKQLKFALK TYFPYASPAL bmy_11435T0/1-327 RYALLETDGA LEVLATLQVF TRCFVEALEK ENKQLKFAFK TYFPYASPSL BACU006705/1-288 RYALLETDGA LEVLATLQVF TRCFVEALEK ENKQLKFAFK TYFPYASPSL ENSTTRP00000005822/1-562 RYALLETDGA LEVLATIQVF TRCFVEALEK ENKQLKFAFK TYFPYASPSL 351 400 ENSP00000289081/1-558 AMVLLQDPQD IPRGHWLQTL KHISELLREA VEDQTHGSCG GPFESWFLFI ENSBTAP00000022853/1-568 VMVLLQHPKD IPQGLWHQSL KHISEMLKEI VED--HGSYG GPFESWFLFV bmy_11435T0/1-327 VMVLLQHPKD IPQGLWHQAL KHISEMLKEV VEDQTHGSYG GPFESWFLFV BACU006705/1-288 VMVLLQHPKD IPQGLWHQAL KHISEMLKEV VEDQTHGSCG GPFESWFLFV ENSTTRP00000005822/1-562 VMVLLQHPKD IPQGLWHQAL KHISEMLKEV VEDQTHGSYG GPFESWFLFV 401 450 ENSP00000289081/1-558 HFGGWAEMVA EQLLMS--AA EPPTALLWLL AFYYGPRDGR QQRAQTMVQV ENSBTAP00000022853/1-568 HFGGWADITA EQLLMSEAEA EPPEALLWLL AFSCSPGAGH QQRARTMVEV bmy_11435T0/1-327 HFGGWADMAA EQLLTSEAEA EAPEALLWLL AFSCGPGAGR QQRAQTMVEV BACU006705/1-288 HFGGWADMAA EQLLTSEAEA EAPEALLWLL AFSCGPGAGR QRRAQTMVEV ENSTTRP00000005822/1-562 HFGGWADMAA EQLLTSEAEA EAPEALLWLL AFSCGPGAGH QQRAQTMVEV 451 500 ENSP00000289081/1-558 KAVLGHLLAM SRSSSLSAQD LQTVAGQGTD TDLRAPA-QQ LIRHLLLNFL ENSBTAP00000022853/1-568 KTVLGCLTKL FRSPALSARD LQAAAGENLG GDPRPPACQQ LVRRLLLHFL bmy_11435T0/1-327 KAVLSCLMKL LRSPTLSARD LQAAAGEGGE GAPRPPACQQ LIRRLLLNFL BACU006705/1-288 KAVLSGLMKL LRSPTLSARD LQAAAGEGGE GAPRPPACQQ LIRRLLLNFL ENSTTRP00000005822/1-562 KAVLSRLMKL LRSPTLSARD LQAAAGEGGE GAPRPPACQQ LIRRLLLNFL 501 550 ENSP00000289081/1-558 LWAPGGHTIA WDVITLMAHT AEITHEIIGF LDQTLYRWNR LGIESPRSEK ENSBTAP00000022853/1-568 LWAPGGHTIA REVITLMAQT DAIMNEIIGF LDYTLYRWDH LCVEAHRSRK bmy_11435T0/1-327 LWAPGGHAIA QEVITLMAQT DAIMHEIIGF LDQTLYRWDH LCVEAPRSRK BACU006705/1-288 LWAPGGHAIA REVITLVSLP ---FSGILVL ILIPGKRW-- VITQGPSF-- ENSTTRP00000005822/1-562 LWAPGGHAIA REVITLMAQT DAIMHEIIGF LDQTLYRWDH LCVEAPRSRK 551 600 ENSP00000289081/1-558 LARELLKELR TQV------- ENSBTAP00000022853/1-568 LARELLTELR EQALPGQVNQ bmy_11435T0/1-327 LAQELLAELR GQA------- BACU006705/1-288 ---------- ---------- ENSTTRP00000005822/1-562 LARELLAELR GQA-------