KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:13 2014 Check: 00 .. Name: ENSP00000319796/1-518 Len: 570 Check: 3930 Weight: 1.00 Name: ENSBTAP00000022875/1-516 Len: 570 Check: 5423 Weight: 1.00 Name: ENSTTRP00000003500/1-512 Len: 570 Check: 3302 Weight: 1.00 Name: bmy_10921T0/1-529 Len: 570 Check: 3838 Weight: 1.00 Name: BACU018791/1-498 Len: 570 Check: 6785 Weight: 1.00 // 1 50 ENSP00000319796/1-518 MVGAKAGPSP GTSLGLAQQH SGGSSVLVKS PFCQVCCCGP APCASCCHSR ENSBTAP00000022875/1-516 MVGEKAVTSP NTSLRLAPQR RGVNSVIVSP PFYQVSCCGP VPCTCCCPSK ENSTTRP00000003500/1-512 MVGAKAVTSS STSLRLAQQR SGVSSVTVSL PFYQVLCCGP APCTCCCHSR bmy_10921T0/1-529 MVGAKAVTSP STSLRLAQQC SGVCSVIVSL PFYQVFCCGP APCTCCCHPR BACU018791/1-498 MVGAKAVTSP STSLRLAQQR SGVCSVIVSL PFYQVFCCGP APCTCCCHPR 51 100 ENSP00000319796/1-518 WPSLTASTCS RLFYILLHVG ASAICCLLLS RTVVERVWGK THRIQMPSGL ENSBTAP00000022875/1-516 RPPLTEPPCS RLFYILLHVG TSAVCCLLLS RTVVERVWGK AHGIQMPSGL ENSTTRP00000003500/1-512 -PPLTESPCS RLFYILLHVG TSAVCCLLLS RMVVQRVW-K AHGIQMPSGL bmy_10921T0/1-529 WPPLTESPCS RLFYILLHVG TSAVCCLLLS RXVVERVWGK AHGIQMPSGL BACU018791/1-498 WPPLTESPCS RLFYILLHVG TSAVCCLLLS RKVVERVWGK ARGIQMPSGL 101 150 ENSP00000319796/1-518 CAHLFGLSDC PVLSGSGAVY RVCAGTATFH LLQAVLLVHL HSPTSPRAQL ENSBTAP00000022875/1-516 CAHLFGHSHC PVLRGSGAVY RLCAGTATFH LLQAVLLIDL HSRTSLRAQL ENSTTRP00000003500/1-512 CAHLFGHSHC PVLSGSGVVY RVCTGTATFR LLQAVPLVDL HSPTSLRAQL bmy_10921T0/1-529 CAHLFGHSHC PVLSGSGAVY RVCAGTATFH LLQAVLLVDL HSPTSLRAQL BACU018791/1-498 CAHLFGHSHC PVLSGSGAVY RVCAGTATFH LLQAVLLVDL HSPTSLRAQL 151 200 ENSP00000319796/1-518 HNSFWLLKLL FLLGLCAIAF CIPDEHLFPA WHYIGICGGF AFILLQLVLI ENSBTAP00000022875/1-516 HNSFWLLKLL LLLGLCAVAF CIPDEHLFPA WHYIGICGGF TFILLQLVLI ENSTTRP00000003500/1-512 HKSFWLLKLL FLLGLCVVAF CMPDEHLFPA WHYIGICRGF TFILLQLVLF bmy_10921T0/1-529 HKRSW----- ---------- ---------- -HYIGICRGF TFILLQLVLI BACU018791/1-498 HKSFWLLKLL FLLGLCAVAF CMPDEHLFPA WHYIGICRGF TFILLQLVLI 201 250 ENSP00000319796/1-518 TAFAHSWNKN WQTGAAQDCS WFLAVLLATL GFYSMAGVGA VLLFHYYTHP ENSBTAP00000022875/1-516 TAFAHSWNKN WQTGAAQDCR WFLAVLLTTL GFYSMAGAAA ALLFHHYTHP ENSTTRP00000003500/1-512 TAFARSWNKN WQTGAAQDCR WFLAVLLTTL GFYSMAGLEA VLLFHYYTHP bmy_10921T0/1-529 TAFAHSWNKN WQTGAAQDCP WFLAVLLTTL GFYSMAGVAA VLLFHYYTHP BACU018791/1-498 TAFAHSWNKN WQTGAAQDCP WFLAVLLTTL GFYSMADVAA LLLFHYY-HP 251 300 ENSP00000319796/1-518 AGCLLNKMLL SLHLCFCGLI SFLSIAPCIR LKQPRSGLLQ ASVISCYIMY ENSBTAP00000022875/1-516 AGCLLNKMLL SLHLCFCGLL SFLSIAPCIR LKQPRSGLLQ ASIISCYIMY ENSTTRP00000003500/1-512 DGCLLNKMLL SLHVCCCGLL SFLSIAPCIR LKQLHSGLLQ ASVNSCYIT- bmy_10921T0/1-529 DGCLLNKMLL SLHFCCCGLL SFLSIAPCIR LKQLHSGLLQ ASVISCSIMY BACU018791/1-498 DGCLLNKMLL SLHLCCCGLL SFLSIAPCIR LKQLHSGLLQ ASVISCSIMY 301 350 ENSP00000319796/1-518 LTFSALSSRP PERVILQGQN HTLCLPGLSK MEPQTPDISL AMLSASIMYA ENSBTAP00000022875/1-516 LTFSALSSRP PERVILQGQN HTLCLPGLSK MESHTPDTSL AVMSAGIMYA ENSTTRP00000003500/1-512 LTFSALSSHP PESVILQGQN H-LCLPGLSK MEPQTPDTSL AVLSAGIMYA bmy_10921T0/1-529 LTFSALSSRP PESVILQGQN HTLCLPGLSK MEPQTPDTSL AVLSAGII-- BACU018791/1-498 LTFSALSSRP PESVILQGQN HTLCLPGLSK MEPPTPDTSL AVLSAGIMYA 351 400 ENSP00000319796/1-518 CVLFACNEAS YLAEVFGPLW IVKVYSYEFQ KPSLCFCCPE TVEADKG--- ENSBTAP00000022875/1-516 CVLFACNEAS YLAEVFGPLW IVKVYSYEFQ KPSLCFCCPE TGEPEEG--- ENSTTRP00000003500/1-512 CVLSACNEAS YLAEVFGPLW TVKVYSCEVQ KPSLCFCCPE TVQPEEG--- bmy_10921T0/1-529 ------NEAS YLAEVFGPLW IVKVYSCEIQ -PSLCFCCPE TVEPEEGECQ BACU018791/1-498 CVLFACNEAS YLAEVFGPLW IVKVYSCEIQ -PSLCFCCPE TVEPEEG--- 401 450 ENSP00000319796/1-518 ---------- ---------- ---------- ---------- ----QRGGAA ENSBTAP00000022875/1-516 ---------- ---------- ---------- ---------- ----PRGVAA ENSTTRP00000003500/1-512 ---------- ---------- ---------- ---------- ----QTGGAD bmy_10921T0/1-529 VRIRKCRFLQ SAKEPSSAVT KEDGGGGKRC FSSTAASSPF LSPAQRGGAA BACU018791/1-498 ---------- ---------- ---------- ---------- ----QRGGAA 451 500 ENSP00000319796/1-518 RPADQETPPA PPVQVQHLSY NYSAFHFVFF LASLYVMVTL TNWFSYEGAE ENSBTAP00000022875/1-516 RPADQETSPA PPVQVQQLSY SYSAFHFVFF LASLYVMVTL TNWFSYEGAE ENSTTRP00000003500/1-512 RPANQETAPA PPVQAQQLSY SYSAFHFVFF LASLYVMVTL TNWFSYEGAE bmy_10921T0/1-529 RPANQETAPA PPVQAQQLSY SYSGFHFVFF LASLYVMVTL TNWFSYEGAE BACU018791/1-498 RPANQETAPA PPVQAQQLSY SYSAFHFVFF LASLYVMVTL TNWFSYEGAE 501 550 ENSP00000319796/1-518 LEKTFIKGSW ATFWVKVASC WACVLLYLGL -----LLAPL CWPPTQKPQP ENSBTAP00000022875/1-516 LEKTFITGSW ATFWVKVASC WACVLLYLGL -----LLAPF CWSPIPDPQH ENSTTRP00000003500/1-512 LEKTFTTGSW TTFWVKFASC -ARVLLYLGL -----LLAPF CWSPTQDPQP bmy_10921T0/1-529 LEKTFTTGSW TTFWVKVASC WACVLLYLGL ATGTILLVPN PRSPASSSGD BACU018791/1-498 LEKTFTTGSW TTFWVKVASC WACVLLYLGL -----LLAPF CWSPTQDPQ- 551 600 ENSP00000319796/1-518 LILRRRRHRI ISPDNKYPPV ENSBTAP00000022875/1-516 PILRRHCHR- VLPNDKY-PI ENSTTRP00000003500/1-512 PLIFRHCHGI ILPDNKY-PV bmy_10921T0/1-529 TVIAS----- VLPDNKY-PV BACU018791/1-498 ---------- ------P-PL