KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:19:15 2014 Check: 00 ..
Name: ENSP00000328340/1-432 Len: 435 Check: 5806 Weight: 1.00
Name: BACU013932/1-150 Len: 435 Check: 2141 Weight: 1.00
Name: ENSBTAP00000022890/1-424 Len: 435 Check: 9479 Weight: 1.00
Name: ENSTTRP00000015570/1-235 Len: 435 Check: 2935 Weight: 1.00
Name: bmy_08847T0/1-265 Len: 435 Check: 1177 Weight: 1.00
//
1 50
ENSP00000328340/1-432 MAGLGLGSAV PVWLAEDDLG CIICQGLLDW PATLPCGHSF CRHCLEALWG
BACU013932/1-150 ---------- ---------- ---------- ---------- -----MGLWG
ENSBTAP00000022890/1-424 MAGLDAGRAI PVWLAEDDLG CIICHDLLAW PATLPCGHTF CRDCLLDLWA
ENSTTRP00000015570/1-235 RAGLDACPAV PM-LTEDDLG CIICHELLAR PATLSCGHSF CHNCLMGLWG
bmy_08847T0/1-265 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000328340/1-432 ARDARRWACP TCRQGAAQQP HLRKNTLLQD LADKYRRAAR EIQ---AGSD
BACU013932/1-150 AG--RHGSCR TCREGAERPL QRRKNTMPQD LEDKYSREAR ELE-------
ENSBTAP00000022890/1-424 AR--RSRFCP SCREGAPGPP QLRKNTMLED LADKYRLAAR ELEPLSPGPE
ENSTTRP00000015570/1-235 AG--RHGSCP TCREGAERPL QLRKNTMVQD LEDKNSREAR ELE-------
bmy_08847T0/1-265 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000328340/1-432 PAHCPCPGSS SLSSAAARPR RRPELQRVAV EKSITEVAQE LTELVEHLVD
BACU013932/1-150 ---GPSP--- -----APGPS GRTAQLP--- ---------- ----------
ENSBTAP00000022890/1-424 PTPAPRP--- -----ASRPG RPTAQLRVEA PKSSTEVDRE LAKLVERLID
ENSTTRP00000015570/1-235 ---GPNP--- -------PPP RRTAQLPAVA QKSITEVGWG LAELVERLID
bmy_08847T0/1-265 ---------- ---------- -------VVA QKSITEVGWE LAELVERLID
151 200
ENSP00000328340/1-432 IVRSLQNQRP LSESGPDNEL SILGKAFSSG VDLSMASPKL VTSDTAAGKI
BACU013932/1-150 ---------- ---------- -----ALSDG VDLSLASPKL VTSNTPEGKM
ENSBTAP00000022890/1-424 IVRKLQSPRH LLESEPDKEV SVLAMTLLDG VDLSLASPK- VSSSPPEQKM
ENSTTRP00000015570/1-235 TLRSLQGQRH LPESEPDNEM SILAVSPSPG VDFSLASPKL VTSNTPEGKM
bmy_08847T0/1-265 IVRSLQSQRH LPESEPDNEM SILAVALSDG VDLSLASPKL VTSNTPEGKM
201 250
ENSP00000328340/1-432 RDILHDLEEI QEKLQESVTW KEAPEAQMQG ELLEAPSSSS CPLPDQSHPA
BACU013932/1-150 RDILHDLEEI QEKLQENFMR KEALEEQMQA GLPTSPGVFH CP--------
ENSBTAP00000022890/1-424 KDILHDLEEI QEKLRENFTQ KGALEEQTQV ELPEVPSSSS CPLPDQSRFA
ENSTTRP00000015570/1-235 RD-LHDLEEI QEKLQENFMW KEALEEQMQX XXXXXXXXXX X---------
bmy_08847T0/1-265 RDILHDLEEI QEKLQENFTW KEALEEQMQ- GLLLFPGSG- --LKNSSHLP
251 300
ENSP00000328340/1-432 LRRASRFAQW AIHPTFNLKS LSCSLEVSKD SRTVTVSHRP QPYRWSCERF
BACU013932/1-150 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000022890/1-424 PKKASSFARW AISPTFDLES LSCNLKVSVD LRTVTVSDFP MLYAWSPERF
ENSTTRP00000015570/1-235 ---------- ---------- ---------- ---------- ----------
bmy_08847T0/1-265 LRQV------ ---------- ---------- ---------- ---LWSRLPL
301 350
ENSP00000328340/1-432 STSQVLCSQA LSSGKHYWEV DTRNCSHWAV GVASWEMSRD QVLGRTMDSC
BACU013932/1-150 ---------- ---------- ETQREAVLQV ---------- ----------
ENSBTAP00000022890/1-424 ASSQALCSQA LSSGQHYWEV DTQRCSHWAV GVASRGMKRD QILGRTTDSW
ENSTTRP00000015570/1-235 ---------- ---------- -------XXX XXXHLAPKRA SSFAR-----
bmy_08847T0/1-265 PPDSATASFA LSSGQQYWEV DTQHCSHWAV GVASRGMRRD QTLGRTRNSW
351 400
ENSP00000328340/1-432 CVEWKGTSQL SAWHMVKETV LGSDRPGVVG IWLNLEEGKL AFYSVDNQEK
BACU013932/1-150 ---------- ---------- -----PSLIG V----KDGSA ----------
ENSBTAP00000022890/1-424 CVEWKGASQL SAWCMVKETV LGSDRPSVVG IWLDLEEGKL AFYSKADQAK
ENSTTRP00000015570/1-235 ---------- ---------- ---------- ---------- ----------
bmy_08847T0/1-265 CVEWKGTSQL SAWHMVKETV LGSNRPSVVG IWLDLEEGKL AFYSMADQVK
401 450
ENSP00000328340/1-432 LLYECTISAS SPLYPAFWLY GLHPGNYLII KQVKV
BACU013932/1-150 ---------- ---------- ---------- -----
ENSBTAP00000022890/1-424 PLFECPISVS VPLHPAFWLY GLDPGNSLTI RKMNV
ENSTTRP00000015570/1-235 ---------- ---------- ---------- -----
bmy_08847T0/1-265 LLYECPVSAA FPLHPAFWLY GLFPGNSLTM RQINV