KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:15 2014 Check: 00 .. Name: ENSP00000380495/1-666 Len: 797 Check: 5970 Weight: 1.00 Name: ENSBTAP00000022893/1-546 Len: 797 Check: 1807 Weight: 1.00 Name: ENSTTRP00000000595/1-647 Len: 797 Check: 7700 Weight: 1.00 Name: BACU009025/1-591 Len: 797 Check: 7105 Weight: 1.00 Name: bmy_22164T0/1-471 Len: 797 Check: 2670 Weight: 1.00 // 1 50 ENSP00000380495/1-666 MALFYVARYP GPDAAAAAGP EGAEAGAHGR ARALLERLQS RARERQQQRE ENSBTAP00000022893/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000595/1-647 MALFHVARYA GPEAAG---- --AEAEADGR ARALLERLRC RARERELQKQ BACU009025/1-591 MSL------- ---------- ---------- ---------- ---------- bmy_22164T0/1-471 MALFHVARYS GPEAAGAE-- --AEAEADGR ARALLERLRC RARERQLQKQ 51 100 ENSP00000380495/1-666 PAQT------ EAAASTEPAT RRRRRPRR-R RRVNDAEPGS PEAPQGKRRK ENSBTAP00000022893/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000595/1-647 PPQQEPSEPA EAAQTAQAAG KRRRRPRRTR RRKSGGAPGS PHAPPCKRRK BACU009025/1-591 ---------- ---------- ---------- ---------- ---------- bmy_22164T0/1-471 PPQQEPS--- ETAQTAQAAG KRRRRPRRTR RRKSGGAPGS PHAPPSKRRK 101 150 ENSP00000380495/1-666 ADGEDAGAES NEEAPG---- ---EPSAGSS EEAPGEPSAG SSEEAPGERS ENSBTAP00000022893/1-546 ---------- ---------- ---------- ---------- SSEETPAESS ENSTTRP00000000595/1-647 ADDEDEDAG- ---------- ---------- --------AE SSEEAPAGNS BACU009025/1-591 ---------- ---------- ---------- ---------- ---------- bmy_22164T0/1-471 ADNEDEDAGA GGASRGGAGP WDSGPRGADA PPRPRFCRAE SSEEAPAGNS 151 200 ENSP00000380495/1-666 TSASAEAAPD ---GPALEEA AGPLVPGLVL GGFGKRKAPK VQPFLPRWLA ENSBTAP00000022893/1-546 VGAEAAGSPE GRGGPPPEEA SGPLTHALVL GGFGRSKVPK VQPFLPVWLA ENSTTRP00000000595/1-647 MAPKA-GSPE AR-GQPPEEA SGPPAHALVL GGFGRSKAPK VQPFLPAWLA BACU009025/1-591 ---------- ---------- ---------- ---------- VQPFLPAWLA bmy_22164T0/1-471 VGAEAAGSPE GQGGPPPEEA SGPPAHALVL GGFGRSKAPK VQPFLPAWLA 201 250 ENSP00000380495/1-666 EPNCVRRNVT EDLVPIEDIP DVHPDLQKQL RAHGISSYFP VQAAVIPALL ENSBTAP00000022893/1-546 QPSCVGKNVT EGLVPIEDIP EVHPDLQKKL RAQGISSYFP VQAAVIPAVL ENSTTRP00000000595/1-647 EPSCVGKSVT EGLVPIEDIP EVHPDLRKRL RAQGISSYFP VQAAVIPALL BACU009025/1-591 EPSCVGKNVT EGLVSIEDIP EVHPDLQKRL RAQGISSYFP VQAAVIPALL bmy_22164T0/1-471 EPSCVGKNVT EGLVSIEDIP EVHPDLQKRL RAQGISSYFP VQAAVIPALL 251 300 ENSP00000380495/1-666 ESAACGFLVG RGGYRPSDLC VSAPTGSGKT LAFVIPVVQA LLSRVVCHIR ENSBTAP00000022893/1-546 ESTANGFLVS RGGYRPSDLC VSAPTGSGKT LAFVIPVVQA LLHRAVCQVR ENSTTRP00000000595/1-647 ESAANGFLVS RGGYRPSDLC VSAPTGSGKT LAFVIPVVQA LLRRAVCQVR BACU009025/1-591 ESTANGFLVS RGGYRPSDLC VSAPTGSGKT LAFVIPVVQA LLRRAVCQVR bmy_22164T0/1-471 ESTAHGFLVS RGGYRPSDLC VSAPTGSGKT LAFVIPVVQA LLRRAVCQVR 301 350 ENSP00000380495/1-666 ALVVLPTKEL AQQVSKVFNI YTDATPLRVS LVTGQKSLAK EQESLVQKTA ENSBTAP00000022893/1-546 ALVVLPTKEL AQQVSKVFNV YTDATPLRVA LITGQKSLAK EQESLVQKTA ENSTTRP00000000595/1-647 ALVVLPTKEL AQQVSKVFSV YTDATPLRVA LVTGQKSLAK EQESLVQDTA BACU009025/1-591 ALVVLPTKEL AQQVSSVFSI YADATPLRVA LLTGQKSLAK EQESLVQDAA bmy_22164T0/1-471 ALVVLPTKEL AQQVSNVFSV YADATPLRVA LLTGQKSLAK EQESLVQDTP 351 400 ENSP00000380495/1-666 DGYRCLADIV VATPGRLVDH IDQTPGFSLQ QLRFLIIDEA DRMIDSMHQS ENSBTAP00000022893/1-546 DGFRCLADIM VATPGRLVDH IDQTPGFSLQ HLRFLIIDEA DRMIDSMHQS ENSTTRP00000000595/1-647 DGFRCLADIV VATPGRLVDH VEQTPGFSLQ HLRFLVIDEA DRVIDSMHQA BACU009025/1-591 DGFRCLADIV VATPGRLVDH VEQTPGFSLQ HLRLLVIDEA DRVIDSMHQS bmy_22164T0/1-471 HGFRCLADIV VATPGRLVDH VEQTPGFGLQ HLRFLVIDEA DRVIDSMHQS 401 450 ENSP00000380495/1-666 WLPRVVAAAF QSEDPADPCA LLQRRQAQAV TAASTCCPQM PLQKLLFSAT ENSBTAP00000022893/1-546 WLPRVVAAAF PSEGPRDPCA VFQRTQPRVL TAASMCCPQM PLQKLLFSAT ENSTTRP00000000595/1-647 WLPRVVAAAF PSEGSRDPFA LLQRTQPRAV TAASVCCPQM PLQKLLFSAT BACU009025/1-591 WLPRVLAAAF PSEGTRDPFA LLQRTQPRA- ---------- --------AT bmy_22164T0/1-471 WLPRVLAAAF PSEGTRDPFA LLQRTQPRAV TAASVCCPQM PLQKLLFSAT 451 500 ENSP00000380495/1-666 LTQNPEKLQQ LGLHQPRLFS TGLAHRGLED TDGDGD---S GKYAFPVGLT ENSBTAP00000022893/1-546 LTQNPEKLQQ LGLYQPRLFS TGSAHRGPSD PDIDVDEDSG GKYTFPTGLK ENSTTRP00000000595/1-647 LTQNPEKLQQ LGLYRPRLFS TGSVHGGLRD PDVDVAGDLG GKYTFPAGLT BACU009025/1-591 LTQNPEKLQQ LGLYRPRLFS TGSVHGGPRD ADVDGDGDSG GKYTFPAGLM bmy_22164T0/1-471 LTQNPEKLQQ LGLYRPRLFS TGSVHGGP-- ---------- ---------- 501 550 ENSP00000380495/1-666 HHYVPCSLSS KPLVVLHLVL EMGFSRVLCF TNSRENSHRL FLLVQAFGGV ENSBTAP00000022893/1-546 HHYVPCSLRF KPLVILHLIL EMNFSRVLCF TNSRENSHRL FLLVQAFGGV ENSTTRP00000000595/1-647 HRYVPCSLRL KPLVVLHLIL EMNL-KVLCF TNSRXXXXXX XXXXXXXXXX BACU009025/1-591 HRYVPCSLRL KPLVVLHLLL EMNLSRVLCF TNSRENSHRL FLLVQAFGGV bmy_22164T0/1-471 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000380495/1-666 DVAEFSSRYG PGQRRMILKQ FEQGKIQLLI STDATARGID VQGVELVVNY ENSBTAP00000022893/1-546 TVAEFSSRYG PGQRKSILKQ FEQGKIQLLI STDAMARGID VQGVQLVVNY ENSTTRP00000000595/1-647 XXXXXXXXXX XXXXXXXXXX XXXXXXXXLI ST-VTARGID VQGVQLVVNY BACU009025/1-591 RVAEFSSRYG PGSRKRILKR FQQGKIQLLI STDATARGID VQGVQLVVNY bmy_22164T0/1-471 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000380495/1-666 DAPQYLRTYV HRVGRTARAG KTGQAFTLLL KVQERRFLRM LTEAGAPELQ ENSBTAP00000022893/1-546 DAPQYLRTYV HRVGRTARAG KSGQAFTLLL KVQERRFLRM LEEGGVPGLE ENSTTRP00000000595/1-647 DAPQYLRTYV HRVGRTARAG KSGQAFTLLL EVQERRFIRM LREGGVPRLE BACU009025/1-591 DAPQYLRTYV HRVGRTARAG KSGQAFTLLL KVQERRFVRM LREGGVPGLE bmy_22164T0/1-471 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000380495/1-666 RHELSSKLLQ PLVPRYEEAL SQLEESVKEE RKQRAA---- ---------- ENSBTAP00000022893/1-546 RHDTPSELLQ PLVPQYEEAL SLLEKAVKEE RKQKAA---- ---------- ENSTTRP00000000595/1-647 RHDAPSELLQ PLVPRYQEAL SQLERAIREE QRQKAA---- ---------- BACU009025/1-591 RHDAPSELLQ PLAPRYQEAL SQLESAVRVR RREGSSRDDR GGGRRRAGKA bmy_22164T0/1-471 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000380495/1-666 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022893/1-546 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000595/1-647 ---------- ---------- ---------- ---------- ---------- BACU009025/1-591 RGPXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_22164T0/1-471 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000380495/1-666 ---------- ---------- ---------- ---------- ------- ENSBTAP00000022893/1-546 ---------- ---------- ---------- ---------- ------- ENSTTRP00000000595/1-647 ---------- ---------- ---------- ---------- ------- BACU009025/1-591 XXXXXXXXXX XXXXXXXXXX XXXXXXRDSG EGSSPPGGGA ASFPETP bmy_22164T0/1-471 ---------- ---------- ---------- ---------- -------