KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:18 2014 Check: 00 .. Name: ENSP00000273814/1-942 Len: 979 Check: 6794 Weight: 1.00 Name: ENSBTAP00000022905/1-941 Len: 979 Check: 2895 Weight: 1.00 Name: BACU009119/1-819 Len: 979 Check: 3712 Weight: 1.00 Name: bmy_12244T0/1-939 Len: 979 Check: 593 Weight: 1.00 Name: ENSTTRP00000010695/1-949 Len: 979 Check: 489 Weight: 1.00 // 1 50 ENSP00000273814/1-942 MAAAAEPGAR AWLGGGSPRP GSPACSPVLG SGGRARPGP- ---------G ENSBTAP00000022905/1-941 MAAAAEPGAR GWLGGGSPRP GSPTSSPELG AGSRSRSGP- -------GSG BACU009119/1-819 ---------- ---------- ---------- ---------- ---------- bmy_12244T0/1-939 MAAAAEPGAR AWLGGGSPRQ GSPTSSPELG AGSRSRSGPG SGPGSGPGSG ENSTTRP00000010695/1-949 MAAAAEPGAR AWLGGGSPRQ GSPTSSPELG AGSRSRSGP- ---------G 51 100 ENSP00000273814/1-942 PGPGPERAGV RAPGPAAAPG HSFRKVTLTK PTFCHLCSDF IWGLAGFLCD ENSBTAP00000022905/1-941 PGSGPERSGS RPPGP-AAPS HSFRKVTLTK PTFCHLCSDF IWGLAGILCD BACU009119/1-819 ---------- ---------- ---------- ---------- ---------- bmy_12244T0/1-939 PGSGPERAGA RPLGP-AAPS HSFRKVTLTK PTFCHLCSDF IWGLAGILCD ENSTTRP00000010695/1-949 PGSGPERAGA RPLGP-AAPG HSFRKVTLTK PTFCHLCSDF IWGLAGILCD 101 150 ENSP00000273814/1-942 VCNFMSHEKC LKHVRIPCTS VAPSLVRVPV AHCFGPRGLH KRKFCAVCRK ENSBTAP00000022905/1-941 VCNFMSHEKC LKHVKTPCTS VAPSLVRVPV AHCFGPRGLY KRRFCSVCRK BACU009119/1-819 ----MSHEKC LKHVKTPCTS VAPSLVRVPV AHCFGPRGLY KRRFCAVCRK bmy_12244T0/1-939 VCNFMSHEKC LKHVKTPCTS VAPSLVHVPV AHCFGPRGLY KRRFCAVCRK ENSTTRP00000010695/1-949 VCNFMSHEKC LKHVKTPCAS VAPSLVRVPV AHCFGPRGLY KRRFCAVCRK 151 200 ENSP00000273814/1-942 VLEAPALHCE -VCELHLHPD CVPFACSDCR QCHQDGHQDH DTHHHHWREG ENSBTAP00000022905/1-941 GLEAPGLRCE AVCELHVHPD CVPFACSDCR QCHQDGHRDH DAHLHHWREG BACU009119/1-819 GLEAPGVRCE -VCELHVHPD CVPFACSDCR QCHQDGHRDH DTHLHHWREG bmy_12244T0/1-939 GLEAPGVRCE -VCELHVHPD CVPFACSDCR QCHQDGHRDH DTHLHHWREG ENSTTRP00000010695/1-949 SLEAPGVRCE -VCELHVHPD CVPFACSDCR QCHQDGHRDH DTHLHHWREG 201 250 ENSP00000273814/1-942 NLPSGARCEV CRKTCGSSDV LAGVRCEWCG VQAHSLCSAA LAPECGFGRL ENSBTAP00000022905/1-941 TLPSGARCEL CRKTCGSSDV PAGVRCEWCG IQAHSVCSAA LAPECTFGRL BACU009119/1-819 NLPSGARCEV CRKTCGSSDV LAGVRCEWCG VQAHSVCSAA LAPECTFGRL bmy_12244T0/1-939 NLPSGARCEV CRKTCGSSDV LAGVRCEWCG VQAHSVCSAA LAPECTFGRL ENSTTRP00000010695/1-949 NLPSGARCEV CRKTCCSSDV LAGVRCEWCG VQAHSVCSAA LAPECTFGRL 251 300 ENSP00000273814/1-942 RSLVLPPACV RLLPGGFSKT QSFRIVE--A AEPGEGGDGA DGSAAVGPGR ENSBTAP00000022905/1-941 RTLVLPPACV RLLSRNFSKM HCFRIPESAA PEPEDGEDSA DGSVPAGPGR BACU009119/1-819 RTMVLPPACV RLLSRNFSKM HCFRISESTA PEPGEGDDSV DGSTPAGPGR bmy_12244T0/1-939 RTMVLPPACV RLLSRNFSKM HCFRISESTA PEPG------ ---------- ENSTTRP00000010695/1-949 RTMVLPPACV RLLSRNFSKM HCFRISESTA PEPGEGEDSV DGSSPAGPGR 301 350 ENSP00000273814/1-942 ETQATPESGK QTLKIFDGDD AVRRSQFRLV TVSRLAGAEE VLEAALRAHH ENSBTAP00000022905/1-941 EV-GTPESGK QTLKIFDGSD AMQRNHFRAV TVPRLARSQE VLEAALRAYY BACU009119/1-819 EV-MALESSK QTLKIFDGND AVQRNYFRAI TVPRLAKSQE VLEAALRAYY bmy_12244T0/1-939 ---------K QTLKIFDGND AVQRNHFRAI TVPRLAKSQE VLEAALRAYY ENSTTRP00000010695/1-949 EV-MTLESSK QTLKIFDGND AVQRNHFRAI TVPRLAKSQE VLEVALRAYY 351 400 ENSP00000273814/1-942 IPEDPGHLEL CRLPPSSQAC DAWAGGK--A GSAVISEEGR SPGSGEA--- ENSBTAP00000022905/1-941 ISEDPQGFQL QALPTPVQLG DTAAAGRVWS TGPAEEEGGR A--------- BACU009119/1-819 ITQDPQGFQL QALPAPALAG DTGASGKVWS GGTTQEEGSR GPGARDVPSA bmy_12244T0/1-939 ITEDPQGFQL QALPAPALAG DTGASGKVWS GGTTQEEGSR GPGARDIPSV ENSTTRP00000010695/1-949 ITEDPQGFQL QALPAPALAG NTGASGKAWS GGTTEEEGSR GPGARDAPSI 401 450 ENSP00000273814/1-942 --TPEAWVIR ALPRAQEVLK IYPGWLKVGV AYVSVRVTPK STARSVVLEV ENSBTAP00000022905/1-941 --APEAWVLR ALPRTQEILK IYPAWLKVGV AYVSIRVTPQ STARSVVLEV BACU009119/1-819 IRIPEAWIIC ALPRTQEVLK IYPAWLKVGV AYVSIHVTPQ STARTVVLEV bmy_12244T0/1-939 IRIPEAWIIC ALPRTQEVLK IYPAWLKVGV AYVSICVTPQ STARTVVLEV ENSTTRP00000010695/1-949 TRVPEAWIIR ALPRTQEVLK IYPAWLKVGV AYVSLRVTPQ STARTVVLEV 451 500 ENSP00000273814/1-942 LPLLGRQAES PESFQLVEVA MGCRHVQRTM LMDEQPLLDR LQDIRQMSVR ENSBTAP00000022905/1-941 LPLLGRQAEG AEGFQLVEVL MGSRQVQRTV LADEEPLLDR LREIRQTSLR BACU009119/1-819 LTLLGCQAEG RKSFQLVEVL MGSRQVQRTV LADEEPLLDR LREIRQTSLR bmy_12244T0/1-939 LPLLGRQAEG PKSFQLVEVL MGSRQVQRTV LADEEPLLDR LREIRQTSLR ENSTTRP00000010695/1-949 LPLLGRQAEG LKSFQLVEVL MGSRQVQRTV LADEEPLLDR LREIRQTSLR 501 550 ENSP00000273814/1-942 QVSQTRFYVA ESRDVAPHVS LFVGGLPPGL SPEEYSSLLH EAGATKATVV ENSBTAP00000022905/1-941 QMSQTRFYVA ESRVPAPRVS LFVGGLPPGL SPQEYRRLLD EAVTSKAALV BACU009119/1-819 QMSQTRFYVA ESRVLAPRVS LFVGGLPPGR SPQEYSSLLD EAVASKAGLV bmy_12244T0/1-939 QMSQTRFYVA ESRVVAPRVS LFVGGLPPGR SPQEYSSLLD EAVASK---- ENSTTRP00000010695/1-949 QMSQTRFYVA ESRVVAPRVS LFVGGLPPGR SPQEYSSLLD EAVASKAGLV 551 600 ENSP00000273814/1-942 SVSHIYSSQG AVVLDVACFA EAERLYMLLK DMAVRGRLLT ALVLPDLLHA ENSBTAP00000022905/1-941 TVSHVYSAQG AVVLDVACFA EAERLYMLIR DTAVRGRPLT ALVLPEVLHT BACU009119/1-819 SMSHVYSTQG AVVLDVACFA EAERLYMLVR DTAVHGRPLT ALVLPDVL-- bmy_12244T0/1-939 ---------G AVVLDVACFA EAERLYMLVR DTAVHGRPLT ALVLPDVLHL ENSTTRP00000010695/1-949 SVSHVYSAQG AVVLDVACFA EAERLYMLVR DTAVHGRPLT ALVLPDVLHL 601 650 ENSP00000273814/1-942 KLPPDSCPLL VFVNPKSGGL KGRDLLCSFR KLLNPHQVFD LTNGGPLPGL ENSBTAP00000022905/1-941 KLAPDCRPLL VFVNPRSGGL KGRDLLCSFR KLLNPHQVFE LTNGGPLPGF BACU009119/1-819 -----C---- ---------- --RDTSCL-- ---------- -----PAARF bmy_12244T0/1-939 KLPPDCRPLL VFVNPRSGGL KGRDLLCNFR KLLNPHQVFE LTNGGPLPGF ENSTTRP00000010695/1-949 KLPPHCRPLL VFVNPRSGGL KGRDLLCSFR KLLNPHQVFE LTNGGPLPGF 651 700 ENSP00000273814/1-942 HLFSQVPCFR VLVCGGDGTV GWVLGALEET RYRLACPEPS VAILPLGTGN ENSBTAP00000022905/1-941 HVFSRVPCFR VLVCGGDGTV GWVLAALEDL RHHLACPEPA VAILPLGTGN BACU009119/1-819 HVFSQVPCFR VLVCGGDGTV GWVLAALEEM RHRLACPEPA VAILPLGTGN bmy_12244T0/1-939 HVFSQVPCFR VLVCGGDGTV GWVLAALEEM RHRLACPEPA VAILPLGTGN ENSTTRP00000010695/1-949 HVFSQVPCFR VLVCGGDGTV GWVLDALEEM RHRLACPEPA VAILPLGTGN 701 750 ENSP00000273814/1-942 DLGRVLRWGA GYSGEDPFSV LLSVDEADAV LMDRWTILLD AHEAGSAEND ENSBTAP00000022905/1-941 DLGRVLRWGA GYSGEDPFSV LLSVDEADAV LVDRWTILLD AHESACGEDS BACU009119/1-819 DLGRVLRWGA GYSGEDPFSV LVSVDEADAV LVDRWTILLD AHEAGGGENS bmy_12244T0/1-939 DLGRVLRWGA GYSGEDPFSV LVSVDEADAV LVDRWTILLD AHEAGGGENS ENSTTRP00000010695/1-949 DLGRVLRWGA GYSGEDPFSV LVSVDEADAV LVDRWTILLD AHEAGSGENS 751 800 ENSP00000273814/1-942 TADAEPPKIV QMSNYCGIGI DAELSLDFHQ AREEEPGKFT SRLHNKGVYV ENSBTAP00000022905/1-941 EADAEPPKIV QMSNYCGIGI DAELSLDFHQ AREEEPGKFT SRFHNKGVYV BACU009119/1-819 VADAEPPKIV HMSNYCGIGI DAELSLDFHQ AREEEPGKFT SRFHNKGVYV bmy_12244T0/1-939 VADAEPPKIV HMSNYCGIGI DAELSLDFHQ AREEEPGKFT SRFHNKGVYV ENSTTRP00000010695/1-949 VADTEPPKIV HMSNYCGIGI DAELSLDFHQ AREEEPGKFT SRFHNKGVYV 801 850 ENSP00000273814/1-942 RVGLQKISHS RSLHKQIRLQ VERQEVELPS IEGLIFINIP SWGSGADLWG ENSBTAP00000022905/1-941 RVGLQKISHS RSLHRALRLQ VEQQEVELPS IEGLIFINIP SWGSGADLWG BACU009119/1-819 RAGLQKLSHP RGLHRALRLQ AEQQEVELPS IEGLIFINIP SWGSGADLWG bmy_12244T0/1-939 RAGLQKLSHP RGLHRALRLQ AEQQEVELPS IEGLIFINIP SWGSGADLWG ENSTTRP00000010695/1-949 RAGLQKMNRS RGLHRALRLQ AGRQEVQLPS IEGLIFINIP SWGSGADLWG 851 900 ENSP00000273814/1-942 SDSDTRFEKP RMDDGLLEVV GVTGVVHMGQ VQGGLRSGIR IAQGSYFRVT ENSBTAP00000022905/1-941 SDSDSRFEKP RMDDGLLEVV GVTGVVHMGQ VQSGLRSGIR IAQGSYFRVT BACU009119/1-819 SDSDSRFEKP RMDDGLLEVV GVTGVVHMGQ VQGGLRSGIR IAQGSYFRVT bmy_12244T0/1-939 SDSDSRFKKP RMDDGLLEVV GVTGVVHMGQ VQGGLRSGIR IAQGSYFRVT ENSTTRP00000010695/1-949 SESDSRFEKP RMDDGLLEVV GVTGVVHMGQ VQGGLRSGIR IAQGSYFRVT 901 950 ENSP00000273814/1-942 LLKATPVQVD GEPWVQAPGH MIISAAGPKV HMLRKAKQKP RRAGTTRDAR ENSBTAP00000022905/1-941 LLKATPVQVD GEPWVQAPGH LIISAAGPKV HMLRKAKQKP RKAGPAKDAR BACU009119/1-819 LLKATPVQVD GEPWVQAAGH MIISAAGP-- --------KG RPAGGGGGLL bmy_12244T0/1-939 LLKATPVQVD GEPWVQAPGH MIISAAGPKV HMLRKAKQKP RKAGTPKDVR ENSTTRP00000010695/1-949 LLKAAPVQVD GEPWVQAPGH MIISAAGPKV HMLRKAKQKP RKAGTPKDVR 951 1000 ENSP00000273814/1-942 ADAAPAP--- ESDPR----- --------- ENSBTAP00000022905/1-941 ADGAPAP--- EGDPK----- --------- BACU009119/1-819 PAGLGCAERL AWPWCPAVLL ----RLVLP bmy_12244T0/1-939 ADGAPARGGL QGEAGPGAAL AGGCTRPQP ENSTTRP00000010695/1-949 ADGAPAP--- EGDSK----- ---------