KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:22 2014 Check: 00 .. Name: ENSP00000417638/1-970 Len: 1116 Check: 897 Weight: 1.00 Name: ENSTTRP00000013647/1-956 Len: 1116 Check: 6391 Weight: 1.00 Name: ENSBTAP00000022931/1-960 Len: 1116 Check: 5003 Weight: 1.00 Name: bmy_05847T0/1-967 Len: 1116 Check: 3670 Weight: 1.00 Name: BACU018046/1-921 Len: 1116 Check: 6534 Weight: 1.00 // 1 50 ENSP00000417638/1-970 ---------- ---------- ---------- ---------- ----MAQLER ENSTTRP00000013647/1-956 ---------- ---------- ---------- ---------- ----MMQPER ENSBTAP00000022931/1-960 ---------- ---------- ---------- ---------- -----MQPDR bmy_05847T0/1-967 NARGFGRNGS GTAGVGVRVH SAARLAGAAS GSSARPPAAA REPGMMQPER BACU018046/1-921 ---------- ---------- ---------- ---------- ----MMQSER 51 100 ENSP00000417638/1-970 SAISGFSSKS RRNSFAYDVK REVYNEETFQ QEHKRKASSS GNMNINITTF ENSTTRP00000013647/1-956 S-FQSLGSRY RQNSFMYDVK RDVYNEENFQ QEYRRKTAFS GKLDIDISTV ENSBTAP00000022931/1-960 S-FQSFASRY RQSSFTYDVK RDVYNEENFQ QEHRKKTASS GNVDIDISTV bmy_05847T0/1-967 S-FQSLGSRY RQNSFMYDVK RDVYNEETFQ QEHRRKTAFS GNLDIDISTV BACU018046/1-921 S-FQSLGSRY RQNSFMYDVK RDVYNEETFQ QEHRRKTAFS GNLDIDISTV 101 150 ENSP00000417638/1-970 RHHVQCRCSW HRFLRCVLTI FPFLEWMCMY RLKDWLLGDL LAGISVGLVQ ENSTTRP00000013647/1-956 SHHVQCRCSW YKFRRCMLTI FPFLEWMCFY RFKDWLLGDL LAGISVGLVQ ENSBTAP00000022931/1-960 SHHVQCRCSW HKFRRCLLTV FPFLEWMCFY RFKDWLLGDL LAGISVGLVQ bmy_05847T0/1-967 SHHVQCRCSW HKFRRCMLTI FPFLKWMCFY RFKDWLLGDL LAGISVGLVQ BACU018046/1-921 SHHVQCRCSW HKFRRCMLTI FPFLKWMCFY RFKDWLLGDL LAGISVGLVQ 151 200 ENSP00000417638/1-970 VPQGLTLSLL ARQLIPPLNI AYAAFCSSVI YVIFGSCHQM SIGSFFLVSA ENSTTRP00000013647/1-956 VPQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXTFFLVSA ENSBTAP00000022931/1-960 IPQVLMLGLL ARHLIPPLNV SYAAFCASVI YGIFGSCHQM SIGTFFLVSA bmy_05847T0/1-967 VPQGLTFGLL ARQLIPPLNV SYAAFCASVI YGILGSCHQM SIGTFFLVSA BACU018046/1-921 VPQGLTFGLL ARQLIPPLNV SYAAFCASVI YGILGSCHQM SIGTFFLVSA 201 250 ENSP00000417638/1-970 LLINVLKVSP FNNGQLVMGS FVKNEFSAPS YLMGYNKSLS VVATTTFLTG ENSTTRP00000013647/1-956 LTINVLRTYP FNGGHVILGT FIKDDFSNLS FFENYNKSLS VMASTTLLTE ENSBTAP00000022931/1-960 LAINVLRTQP FNRGHLLLGT FIQADFSNTS FYENYNRSLS SVASVTLLTG bmy_05847T0/1-967 LTINVLRTYP FNSGHLILGT FIKDDFSNLS FFENYNKSLS VVASTTLLTG BACU018046/1-921 LTINVLRTYP FNSGHLILGT FIKDDFSNLS FFENYNKSLS VVASTTLLTG 251 300 ENSP00000417638/1-970 IIQLIMGVLG LGFIATYLPE SAMSAYLAAV ALHIMLSQLT FIFGIMISFH ENSTTRP00000013647/1-956 IIQLSMGMLG FGFIITYIPE AAISAYLAAT ALHIMLSQMT CIFGIMISFH ENSBTAP00000022931/1-960 IIQLSMGMLG FGFIVAYIPE AAISAYLAAT ALHVMLSQLT CIFGIMISYN bmy_05847T0/1-967 IIQLSMGMLG FGFIITYIPE AAISAYLAAT ALHIMLSQLT CIFGIMIRFH BACU018046/1-921 IIQLSMGMLG FGFIITYIPE AAISAYLAAT ALHIMLSQLT CIFGIMIRFH 301 350 ENSP00000417638/1-970 AGPISFFYDI INYCVALPKA NSTSILVFLT VVVALRINKC IRISFNQYPI ENSTTRP00000013647/1-956 SGPISFFYNI INYCIGLPKA NSTSILLFLT AIVALRINKC IRISYNQYPI ENSBTAP00000022931/1-960 SGPIAFFYNI INYCLGLPKA NSTSILLFLT AMVALRINKC IRISFNQYPI bmy_05847T0/1-967 SGPISFFY-- ---------- ---------- ---------- ---------- BACU018046/1-921 SGPISFFYNI INYCIGLPKA NSTSILLFLT AVVALRINKC IRISYNQYPI 351 400 ENSP00000417638/1-970 EFPMELFLII GFTVIANKIS MATETSQTLI DMIPYSFLLP VTPDFSLLPK ENSTTRP00000013647/1-956 KFPMEIFLIL GFAAFANKVN VDTENSKMLI DMIPYSFLFP VTPDMSNLTE ENSBTAP00000022931/1-960 EFPMEVFLVL GFAAFSNKVN MATENSLMLM EMIPYSFLFP VTPDMSNLTE bmy_05847T0/1-967 --------IL GFAAFANKIN VDTENSKMLI DMIPYSFLFP VTPDVSNLTE BACU018046/1-921 KFPMEIFLII GFAAFANKIN VDTENSKMLI DMIPYSFLFP VTPDVSNLTE 401 450 ENSP00000417638/1-970 IILQAFSLSL VSSFLLIFLG KKIASLHNYS VNSNQDLIAI GLCNVVSSFF ENSTTRP00000013647/1-956 VLLEAFSLAL VSSSLLIFLG RKIASFHNYD VNSNQDLIAI GLCNVVSSFF ENSBTAP00000022931/1-960 VLIESFSLAL VSSSLLVFLG KKIASFHNYD VNSNQDLIAI GLCNVVSSFF bmy_05847T0/1-967 VLLEAFSLAL VSSSLLIFLG RKIASFHNYD VNSNQDLIAI GLCNVVSSFF BACU018046/1-921 VLLEAFSLAL VSSSLLIFLG RKIASFHNYD VNSNQDLIAI GLCNVVSSFF 451 500 ENSP00000417638/1-970 RSCVFTGAIA RTIIQDKSGG RQQFASLVGA GVMLLLMVKM GHFFYTLPNA ENSTTRP00000013647/1-956 RSYVFTGAVV RTIIQDKTGG RQQFASLVGA VVMLLLMVKV GRFFYKLPNA ENSBTAP00000022931/1-960 RSYVFTGAVA RTIIQDKTGG RQQFASLVGA GIMLLLMMKM ARFFYRLPNA bmy_05847T0/1-967 RSYVFTGAVV RTIIQDKAGG RQQFASLVGA GVMLLLMVKV GRFFYELPNA BACU018046/1-921 RSYVFTGAVV RTIIQDKAGG RQQFASLVGA GVMLLLMVKV GRFFYKLPN- 501 550 ENSP00000417638/1-970 VLAGIILSNV IPYLETISNL PSLWRQDQYD CALWMMTFSS SIFLGLDIGL ENSTTRP00000013647/1-956 VLAGIILSNV LPYLETIYNL PNLWRQNQYD CLIWMVTFIS AILLGLDMGL ENSBTAP00000022931/1-960 IVAGIILSNV LPYLEAVYTL PSLWRQNQYD CLIWMVTFMS AILLGLDIGL bmy_05847T0/1-967 VLAGIILSNV LPYLETIYNL PNLWRQNQYD CLIWMVTFIS AILLGLDIGL BACU018046/1-921 ---------- ---------- ---------- -LIWMVTFIS AILLGLDIGL 551 600 ENSP00000417638/1-970 IISVVSAFFI TTVRSHRAKI LLLGQIPNTN IYRSINDYRE IITIPGVKIF ENSTTRP00000013647/1-956 LVSVAFTFFI ITVQSHRTKI LLLGQIPNTN IYRSFHDYQE VTNIPGVKIF ENSBTAP00000022931/1-960 VVAVTFAFFI ITVQSHRTKI LLLGQIPNTN IYRSFQDYRE VANIPGVKIF bmy_05847T0/1-967 LVSVAFTFFI ITVQSHRTKI LLLGQIPNTN IYRSFHDYRE VTNIPGVKIF BACU018046/1-921 LVSVAFTFFI ITVQSHRTKI LLLGQIPNTN IYRSFHDYRE VTNIPGVKIF 601 650 ENSP00000417638/1-970 QCCSSITFVN VYYLKHKLLK EVDMVKVPLK EEEIFSLFNS SDTNLQGGKI ENSTTRP00000013647/1-956 QCCNSITFVN VHYLKRKLLE GVEMVKVPLT EEEIYSLFNQ NEDGPQQGKL ENSBTAP00000022931/1-960 QCCNAITFVN VHYLKRKVLE EIEMVKMPLT EEEIYTLFSQ NEEGAQRGKI bmy_05847T0/1-967 QCCNSITFVN VHYLKRKLLE GVEMVKVPLT EEEIYSLFNQ NEDGPQRGKI BACU018046/1-921 QCCNSITFVN VHYLKRKLLE GVEMVKVPLT EEEIYSLFNQ NEDGPQRGKI 651 700 ENSP00000417638/1-970 CRCFCNCDDL EPLPRI---- ---------- ---LY----- ---------- ENSTTRP00000013647/1-956 CWCFCNCDEP EPPPRV---- ---------- ---VY----- ---------- ENSBTAP00000022931/1-960 CRCYCNCDEP EPSPRV---- ---------- ---IY----- ---------- bmy_05847T0/1-967 CWCFCNSDEP EPPPRV---- ---------- ---VY----- ---------- BACU018046/1-921 CWCSCNSDEP EPPPRVESGP CDCRVSIHVF HAIVFPVLGT VLKQHRPIRS 701 750 ENSP00000417638/1-970 ----TERFEN KLDPE-ASSI NLIHCSHFES MNTSQTASED QVPYTVSSVS ENSTTRP00000013647/1-956 ----TERFES KGDLDSSSSI NLVRCSRFKI MDTSQTMSDH QVPYITSSTS ENSBTAP00000022931/1-960 ----TERYEV QRGRE-SSFI NLVRCSRFES MNTAQTMSED QVPYITSSSS bmy_05847T0/1-967 ----TERFES KRGLD-SSSI NLVRCSRFKS MDTSQTMSDD QVPYITSSTS BACU018046/1-921 MKGVKERFES KWGLD-SSSI NLVRCSRFKS MDTSQTMSDD QVPYITSSTS 751 800 ENSP00000417638/1-970 QKNQGQQYEE VEEVWLPNNS SRNSSPGLPD VAESQ-GRRS LIPYSDASLL ENSTTRP00000013647/1-956 QRN--PNYKE VEKVWLSDDP SRSMSITLPD ASETQVGGRT LLPYSTSSLL ENSBTAP00000022931/1-960 QRN--PNYEE VEKVWLSDDP SRSMTITLPE ASDTQVRATK LLPYSTSTIL bmy_05847T0/1-967 QRN--PNYKE VEKVWLSDDP SRSMSITLPD ASETQVGGRT PLPYSTSSLL BACU018046/1-921 QRN--PNYKE VEKVWLSDDP SRSMSITLPD ASETQVGGRT PLPYSTSSLL 801 850 ENSP00000417638/1-970 PSVHTIILDF SMVHYVDSRG LVVLRQICN- ---------- -----AFQNA ENSTTRP00000013647/1-956 PSIHTIILDF SMVHLVDAQA LVVLRQXXX- ---------- -----XXXXX ENSBTAP00000022931/1-960 PSIHTIILDF SMVHLVDARA LVVLRQMFS- ---------- -----AFQNA bmy_05847T0/1-967 PSIHTIILDF SMVRLVDAQA LVVLRQAFPG IKQFTHQMFT ELNGVGMQRC BACU018046/1-921 PSIHTIILDF SMVRLVDAQA LVVLRQMFN- ---------- -----AFQNA 851 900 ENSP00000417638/1-970 NILI------ ---------- ---------- ----LIAGCH S--------- ENSTTRP00000013647/1-956 XXXX------ ---------- ---------- ----XXXXXX X--------- ENSBTAP00000022931/1-960 NILV------ ---------- ---------- ----LIAGCH S--------- bmy_05847T0/1-967 SMLSKTPTSW CSLQGVTVSI LHLMNRAVFC TLDPLLPRCL TLRVFPVWFV BACU018046/1-921 NILV------ ---------- ---------- ----LIAGCH S--------- 901 950 ENSP00000417638/1-970 -SIVRAFERN DFFDAGITKT QLFLSVHDAV LFALSRKVIG SSELSIDESE ENSTTRP00000013647/1-956 -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000022931/1-960 -FVVRSLEKN DFFDAGITKA QLFLTLHDAV LFALSRKLPE SSELSVDESE bmy_05847T0/1-967 ASVVRALEKN DFFDAGITKA QLFLTLHDAV LFALSRKLPE SSKLSVDESE BACU018046/1-921 -SVVRALEKN DFFDAGITKA QLFLTLHDAV LFALSRKLPE SSELSVDESE 951 1000 ENSP00000417638/1-970 TVIRETYSET DKNDNSRYKM SSSFLGSQKN VSPGFIKIQQ PV-EEESELD ENSTTRP00000013647/1-956 XXXXXXXXXX XXKEESKHKM SSRLIEAPRS KSPAFIRTQ- ---EEESELD ENSBTAP00000022931/1-960 TVIQETFSET DKKEESRHKT NRSLIEAPRS KSPGFSLLPD PEMEEES--D bmy_05847T0/1-967 RVIQAAYSET DKKEESKHKM SSHLIEAPRS KSPAFTILQD PVTEEESELD BACU018046/1-921 TVIQEAYSET DKKEESKHKM SSRLIEAPRS KSPAFTILQD PVTEEESELD 1001 1050 ENSP00000417638/1-970 LEL----ESE QEAGLGLDLD LDRELEPEME PKAETETKTQ TEMEPQPETE ENSTTRP00000013647/1-956 FDLYPMQESE QETGLDPDLD LDHEMEP--- ---ESELEPE SELDPETETK ENSBTAP00000022931/1-960 LDLYSTIQMS KDHGLDLDLD LDREVEP--- ---ESELEPE SELDQETELE bmy_05847T0/1-967 FDLYPMQESE QETGLDPDLD LDHEMEP--- ---ESGLEPE SELDPETETK BACU018046/1-921 FDLYPMQESE QETGLDPDLD LDREMEP--- ---ESELEPE SELDPETETK 1051 1100 ENSP00000417638/1-970 PEMEPNPKSR PRAHTFPQQR YWPMYHPSMA STQSQTQTRT WSVERRRHPM ENSTTRP00000013647/1-956 PE----STSR PS-S---QQQ Y-PLYQFITP QSPPQTQPRT QSVESRHQLM ENSBTAP00000022931/1-960 PE----PEAS PKPN---RQK YWSLFRAIIP RSPTQTQART QSVDRRHQNV bmy_05847T0/1-967 PE----PTSR PR-S---QQQ Y--------- ---------- ---------- BACU018046/1-921 PE----PTSR PR-S---QQQ Y--------- ---------- ---------- 1101 1150 ENSP00000417638/1-970 DSYSPEGNSN EDV--- ENSTTRP00000013647/1-956 NSLTSQSNAS EDTL-- ENSBTAP00000022931/1-960 KPYTSKADTS EDALEI bmy_05847T0/1-967 ---------- ------ BACU018046/1-921 ---------- ------