KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:19:23 2014 Check: 00 .. Name: ENSBTAP00000022935/1-1465 Len: 1465 Check: 7368 Weight: 1.00 Name: ENSTTRP00000013131/1-1456 Len: 1465 Check: 1799 Weight: 1.00 Name: BACU010236/1-1185 Len: 1465 Check: 2689 Weight: 1.00 Name: bmy_05493T0/1-774 Len: 1465 Check: 5873 Weight: 1.00 // 1 50 ENSBTAP00000022935/1-1465 MVNTRKSSLR LLGSKSPGPG PGPGAGVEPG ATGGSSHFIS SRTRSSKTRA ENSTTRP00000013131/1-1456 MVNTRKSSLR LLGSKSPGPG PGPGAGVEPG ATGGSSHFIS SRTRSSKTRA BACU010236/1-1185 ---------- ---------- ---------- ---------- ---------- bmy_05493T0/1-774 ---DNKYILN FV-------- ---------- ---------- ---------- 51 100 ENSBTAP00000022935/1-1465 ASCPAAKAGG SGSAGVALDE ARKAEADGSL SDSHVSPPAK RTLKQPDSVC ENSTTRP00000013131/1-1456 ASCPAAKAGG SGGAGVALDE ARKAEVDGSL SDSHVSPPAK RTLKQPDSVC BACU010236/1-1185 ---------- ---------- ---------- ---------- ---------- bmy_05493T0/1-774 ---------- ---------- FQKAEVDGSL SDSHVSPPAK RTLKQPDSVC 101 150 ENSBTAP00000022935/1-1465 KDKSKSRTTG QREEWNISSG QARLTSQPGA TLPNGHSSLS LRSHPHRGEK ENSTTRP00000013131/1-1456 KDKSKSRSTG QREEWNISTG QARLTSQPGA TLPNGHSSLS LRSHPLRGEK BACU010236/1-1185 ---------- ---------- ---------- ---------- ---------- bmy_05493T0/1-774 KDKSKSRSTG QREEWNISTG QARLTSQPGA TLPNGHSSLS LRSHPLRGEK 151 200 ENSBTAP00000022935/1-1465 KGDGELSCIN GDMEVRKSCR SRKNRFESVN QSLLFDQLVN STAEAVLQEM ENSTTRP00000013131/1-1456 KGDGDLSCIN GDMEVRKSCR SRKNRFESVN QSLLFDQLVN STAEAVLQEM BACU010236/1-1185 ---------- ---------- ---------- ---------- ---------M bmy_05493T0/1-774 KGDGDLSCIN GDMEVRKSCR SRKNRFESVN QSLLFDQLVN STAEAVLQEM 201 250 ENSBTAP00000022935/1-1465 DNINIRRNRR SGEVERLRMW TDTEFENMDM YSRVKRRRKS LRRNSYGIQN ENSTTRP00000013131/1-1456 DNINIRRNRR SGEVERLRMW TDTEFENMDM YSRVKRRRKS LRRNSYGIQN BACU010236/1-1185 DNINIRRNRR SGEVERLRMW TDTEFENMDM YSRVKRRRKS LRRNSYGIQN bmy_05493T0/1-774 DNINIRRNRR SGEVERLRMW TDTEFENMDM YSRVKRRRKS LRRNSYGIQN 251 300 ENSBTAP00000022935/1-1465 HHEVSTEGEE EVCGKLESQE EDGDIEVEEA EGEENDRPYN LRQRKTVDRY ENSTTRP00000013131/1-1456 HHEVSTEGEE E-----ESQE EDGDIEVEEA EGEENDRPYN LRQRKTVDRY BACU010236/1-1185 HHEVSTEGEE E-----ESQE EDGDIEVEEA EGEENDRPYN LRQRKTVDRY bmy_05493T0/1-774 HHEVSTEGEE E-----ESQE EDGDIEVEEA EGEENDRPYN LRQRKTVDRY 301 350 ENSBTAP00000022935/1-1465 QAPPIVPAHQ KKRENTLFDI HRSPARRSHI RRKKHAIHSS DTTSSDEERF ENSTTRP00000013131/1-1456 QAPPIVPAHQ KKRENTLFDI HRSPARRSHI RRKKHAIHSS DTTSSDEERF BACU010236/1-1185 QAPPIVPAHQ KKRENTLFDI HRSPARRSHI RRKKHAIHSS DTTSSDEERF bmy_05493T0/1-774 QAPPIVPAHQ KKRENTLFDI HRSPARRSHI RRKKHAIHSS DTTSSDEERF 351 400 ENSBTAP00000022935/1-1465 ERRKSKSMAR ARNRCLPMNL RAEDLASGIL RERVKVGASL ADVDPMNIDK ENSTTRP00000013131/1-1456 ERRKSKSMAR ARNRCLPMNL RAEDLASGIL RERVKVGASL ADVDPMNIDK BACU010236/1-1185 ERRKSKSMAR ARNRCLPMNL RAEDLASGIL RERVKVGASL ADVDPMNIDK bmy_05493T0/1-774 ERRKSKSMAR ARNRCLPMNL RAEDLASGIL RERVKVGASL ADVDPMNIDK 401 450 ENSBTAP00000022935/1-1465 SVRFDSIGGL SHHIHALKEM VVFPLLYPEI FEKFKIQPPR GCLFYGPPGT ENSTTRP00000013131/1-1456 SVRFDSIGGL SHHIHALKEM VVFPLLYPEI FEKFKIQPPR GCLFYGPPGT BACU010236/1-1185 SVRFDSIGGL SHHIHALKEM VVFPLLYPEI FEKFKIQPPR GCLFYGPPGT bmy_05493T0/1-774 SVRFDSIGGL SHHIHALKEM VVFPLLYPEI FEKFKIQPPR GCLFYGPPGT 451 500 ENSBTAP00000022935/1-1465 GKTLVARALA NECSQGDKKV AFFMRKGADC LSKWVGESER QLRLLFDQAY ENSTTRP00000013131/1-1456 GKTLVARALA NECSQGDKKV AFFMRKGADC LSKWVGESER QLRLLFDQAY BACU010236/1-1185 GKTLVARALA NECSQGDKKV AFFMRKGADC LSKWVGESER QLRLLFDQAY bmy_05493T0/1-774 GKTLVARALA NECSQGDKKV AFFMRKGADC LSKWVGESER QLRLLFDQAY 501 550 ENSBTAP00000022935/1-1465 LMRPSIIFFD EIDGLAPVRS SRQDQIHSSI VSTLLALMDG LDNRGEIVVI ENSTTRP00000013131/1-1456 LMRPSIIFFD EIDGLAPVRS SRQDQIHSSI VSTLLALMDG LDNRGEIVVI BACU010236/1-1185 LMRPSIIFFD EIDGLAPVRS SRQDQIHSSI VSTLLALMDG LDNRGEIVVI bmy_05493T0/1-774 LMRPSIIFFD EIDGLAPVRS SRQDQIHSSI VSTLLALMDG LDNRGEIVVI 551 600 ENSBTAP00000022935/1-1465 GATNRLDSID PALRRPGRFD REFLFNLPDQ KARKHILQIH TRDWNPKLSD ENSTTRP00000013131/1-1456 GATNRLDSID PALRRPGRFD REFLFNLPDQ KARKHILQIH TRDWNPKLSD BACU010236/1-1185 GATNRLDSID PALRRPGRFD REFLFNLPDQ KARKHILQIH TRDWNPKLSD bmy_05493T0/1-774 GATNRLDSID PALRRPGRFD REFLFNLPDQ KARKHILQIH TRDWNPKLSD 601 650 ENSBTAP00000022935/1-1465 AFLGELAEKC VGYCGADIKA LCTEAALIAL RRRYPQIYAS SHKLQLDVSS ENSTTRP00000013131/1-1456 AFLGELAETC VGYCGADIKA LCTEAALIAL RRRYPQIYAS SHKLQLDVSS BACU010236/1-1185 AFLGELAEKC VGYCGADIKA LCTEAALIAL RRRYPQIYVS SHKLQLDVSS bmy_05493T0/1-774 AFLGELAEKC VGYCGADIKA LCTEAALIAL RRRYPQIYAS SHKLQLDVSS 651 700 ENSBTAP00000022935/1-1465 IVLNAQDFYH AMQNIVPASQ RAVMSSGHAL SPIIKPLLER SFNNILAVLQ ENSTTRP00000013131/1-1456 IVLNAQDFYH AMQNIVPAAQ RAVMSSGHAL SPIIRPLLER SFNN-LAVLQ BACU010236/1-1185 IVLNAQDFYH AMQNIVPASQ RAVMSSGHAL SPIIRPLLER SFNNILAVLQ bmy_05493T0/1-774 IVLNAQDFYH AMQNIVPASQ RAVMSSGHAL SPIIRPLLER SFNNILAVLQ 701 750 ENSBTAP00000022935/1-1465 KVFPHAEISQ SDKKEDIETL ILDDSEDENA LSIFETSCHS GSPKKQSSAA ENSTTRP00000013131/1-1456 KVFPHAEISQ SDKKEDIETL ILDDSEDENA LSIFETSCHS GSPKKQSSAA BACU010236/1-1185 KVFPHAEISQ SDKKEDIETL ILDDSEDENA LSIFETSCHS GSPKKQSSAA bmy_05493T0/1-774 KVFPHAEISQ SDKKEDIETL ILDDSEDENA LSIFETSCHS GSPKKQSSAA 751 800 ENSBTAP00000022935/1-1465 AVHKPYLHFT MSPYHQPTSY RPRLLLSGER GSGQTSHLAP ALLHTLEKFS ENSTTRP00000013131/1-1456 AVHKPYLHFT MSPYHQPTSY RPRLLLSGER GSGQTSHLAP ALLHTLEKFS BACU010236/1-1185 AVHKPYLHFT MSPYHQPTSY RPRLLLSGER GSGQTSHLAP ALLHTLEKFS bmy_05493T0/1-774 AVHKPYLHFT MSPYHQPTSY RPRLLLSGER GSGQTSHLAP ALLHTLEKFS 801 850 ENSBTAP00000022935/1-1465 VHRLDLPALY SVSAKTPEES CAQIFREARR TVPSIVYMPH IGDWWEAVSE ENSTTRP00000013131/1-1456 VHRLDLPALY SVSAKTPEES CAQIFREARR TVPSIVYMPH IGDWWEAVSE BACU010236/1-1185 VHRLDLPALY SVSAKTPEES CAQIFREARR TVPSIVYMPH IGDWWEAVSE bmy_05493T0/1-774 VHRLDLPALY SVSAKTPEES CAQFF----- ---------- ---------- 851 900 ENSBTAP00000022935/1-1465 TVRATFLTLL QDIPSFSPIF LLSTSETMYS ELPEEVKCIF RIQYEEVLYI ENSTTRP00000013131/1-1456 TVRATFLTLL QDIPSFSPIF LLSTSETMYS ELPEEVKCIF RIQYEEVLYI BACU010236/1-1185 TVRATFLTLL QDIPSFSPIF LLSTSETMYS ELPEEVKCIF RIQYEEVLYI bmy_05493T0/1-774 ---------- ---------- ---------- -------CFL -------LHL 901 950 ENSBTAP00000022935/1-1465 QRPIEEDRRK FFQELILNQA SMAPPRRKHT GLCAMEVLPL ALPSPPRQLS ENSTTRP00000013131/1-1456 QRPIEEDRRK FFQELILNQA SMAPPRRKHT XXXXXXXXXX XXXXXXXXXX BACU010236/1-1185 QRPIEEDRRK FFQELILNQA SMAPPRRKHT GLCAMEVLPL ALPSPPRQLS bmy_05493T0/1-774 AHP------- ---------- ---------- ---------- ---------- 951 1000 ENSBTAP00000022935/1-1465 ESEKIRMEDQ EENTLRELRL FLRDVTKRLA TDKRFNIFSK PVDIEEVSDY ENSTTRP00000013131/1-1456 XXXXXXXXXX XXXXXXXXRL FLRDVTKRLA TDKRFNIFSK PVDIEKVSDY BACU010236/1-1185 ESEKIRMEDQ EENTLRELRL FLRDVTKRLA TDKRFNIFSK P-----VSDY bmy_05493T0/1-774 ---------- ---------- ---------- ---------- P-----IQDT 1001 1050 ENSBTAP00000022935/1-1465 LEVIKEPMDL STVITKIDKH NYLTAKDFLK DIDLICSNAL EYNPDKDPGD ENSTTRP00000013131/1-1456 LEVIKEPMDL STVITKIDKH NYLTAKDFLK DIDLICSNAL EYNPDKDPGD BACU010236/1-1185 LEVIKEPMDL STVITKIDKH NYLTAKDFLK DIDLICSNAL EYNPDKDPGD bmy_05493T0/1-774 L--------- ---------- ---------- ---------- ---------- 1051 1100 ENSBTAP00000022935/1-1465 KIIRHRACTL KDTAHAIIAA ELDPEFNKLC EEIKEARIKR GLSVTAEQIN ENSTTRP00000013131/1-1456 KIIRHRACTL KDTAHAIIAA ELDPEFNKLC EEIKEARIKR GLSV-AEQIN BACU010236/1-1185 KIIRHRACTL KDTAHAIIAA ELDPEFNKLC EEIKEARIKR GLSVTAEQIN bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSBTAP00000022935/1-1465 PHGTGARKTE TRVEEAFRHK QRNPMDVWHS SANKCAFRVR RKSRRRSQWG ENSTTRP00000013131/1-1456 PHGTGARKME TRVEEAFRHK QRNPMDIWHS SANKCAFRVR RKSRRRSQWG BACU010236/1-1185 PHGTGARKAE TRVEEAFRHK QRNPMDIWHS SANKCAFRVR RKSRRRSQWG bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSBTAP00000022935/1-1465 KGIIKKRKVN NLKKDEDDTK FTDYENHMED RKLLENGEFE VSTDCHEENG ENSTTRP00000013131/1-1456 KGIIKKRKVN NLKKDEEDTK FADYENHMED RKLLENGEFE VSTDCHEENG BACU010236/1-1185 KGIIKKRKVN NLKKDEEDTK FADYENHMED SKLLENGEFE VSTDCHEENG bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSBTAP00000022935/1-1465 EETGDLSMTN DESSCDIMDM DQGQRLNNGA STKENFASTE EESSNESLLI ENSTTRP00000013131/1-1456 EETGDLSMTN DESSCDIMDM DQGRRLNNGA GTKENFASTE EESSNESLLV BACU010236/1-1185 EETGDLSMTN DESSCDIMDM DQGQRLNNGA GTKENFASTE EESSNESLLV bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSBTAP00000022935/1-1465 NSSSSLNPEQ TSRKEPFLKE GCLNGEASTD SFEGIPVLEC QNGKAEVVSC ENSTTRP00000013131/1-1456 NSSSSLNPEQ TSRKESFLKG SCLNGEASTD SFEGIPLLEC QNGKAEVVSF BACU010236/1-1185 NSSSSLNPEQ TSRKESFLKG SCLNGEVSTD SFEGIPLLEC QNGKAEVVSF bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSBTAP00000022935/1-1465 CGSGDKCSSE QKTLLEDQSK EKPETSNENH GDDPEKLEAL ECSTNEKLEP ENSTTRP00000013131/1-1456 CGSGDKCSSE QKNLLEDQSK EKPEASNENH GDDAEKLEAV ECSNNEKFEP BACU010236/1-1185 CGSGDKCSSE QKNLLEDQSK EKPETSKENH GDDPEKLEAV ECSNNEKFEP bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSBTAP00000022935/1-1465 GPDVEVKDAE LDKEVVGASK VKKYRKLILE QAKTTSLELV PEEPSEPVPP ENSTTRP00000013131/1-1456 GPDVEVKDAE LDKE--GASK VKKYRKLILE QAKTTSLELV PEETSEPVPP BACU010236/1-1185 GPDAEVKDAE LDKE--GRAN VLKF------ ---------- ---------- bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSBTAP00000022935/1-1465 LIVDHERLKK LLDLLVDKSN NLAVDQLERL YSLLSQCIYR HRKDYDKSQL ENSTTRP00000013131/1-1456 LIVDHERLKK LLDLLVDKSN NLAVDQLERL YSLLSQCIYR HRKDYDKSQL BACU010236/1-1185 ---------- ---------- -----FLKVL TPELIKCIFY LAPSSNS--- bmy_05493T0/1-774 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSBTAP00000022935/1-1465 VEEMERTVHM FETFL ENSTTRP00000013131/1-1456 VEEMERTVHM FETFL BACU010236/1-1185 ---------- ----- bmy_05493T0/1-774 ---------- -----