KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:26 2014 Check: 00 .. Name: ENSTTRP00000006273/1-1131 Len: 1270 Check: 9337 Weight: 1.00 Name: BACU016335/1-302 Len: 1270 Check: 790 Weight: 1.00 Name: ENSP00000351957/1-1141 Len: 1270 Check: 6278 Weight: 1.00 Name: ENSBTAP00000022940/1-800 Len: 1270 Check: 8018 Weight: 1.00 Name: bmy_12156T0/1-1000 Len: 1270 Check: 7163 Weight: 1.00 // 1 50 ENSTTRP00000006273/1-1131 ---------- ---MAVPGAA RVGAKPGHAE ARPAPSSPRG PGCRGCWGAL BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 MAVPGDAARV RDKPVHSGVS QAPTAGRDCH HRADPASPRD SGCRGCWGDL ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 -----MRKMP YCERLEHEIV LDVDEVQECL NRHSYGNQSG CYCKSA---- 51 100 ENSTTRP00000006273/1-1131 VLRLLRRSQK LSSALCAGSL SFLLALLVRL VRGEIGCDLE RSEEAAAAAA BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 VLQPLRSSRK LSSALCAGSL SFLLALLVRL VRGEVGCDLE QCKEAAAA-- ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000006273/1-1131 AAEEEEEAAP GAEGGVFPGL RGGAPGGGAP LGPWLQPSAL LFSLLCAFFW BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 ---EEEEAAP GAEGGVFPGP RGGAPGGGAR LSPWLQPSAL LFSLLCAFFW ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 ---------- ---GKIFQVN SSGSKSKFSI SEQYVDRNPN TVPHLRPFSP 151 200 ENSTTRP00000006273/1-1131 MGLYLQRAGV RLPLAVALLA ACCGGEALVQ IGLGVGEDHL LSLPAAGVVL BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 MGLYLLRAGV RLPLAVALLA ACCGGEALVQ IGLGVGEDHL LSLPAAGVVL ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 DLLCLV---- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000006273/1-1131 SCLAAATWLV LRLRLGVLMI ALTSAVRTVA LISLERFKVA WRPYLAYLAG BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 SCLAAATWLV LRLRLGVLMI ALTSAVRTVS LISLERFKVA WRPYLAYLAG ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000006273/1-1131 VLGILLARYV EQILPQSTGA APREHFGSQL IAGTKEEIPV FKRRRRSSSV BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 VLGILLARYV EQILPQSAEA APREHLGSQL IAGTKEDIPV FKRRRRSSSV ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000006273/1-1131 VSAEMSGCSS KSHRRTSLPC IPREXLMGHS EWDHKRGPRG SQSPGTSITV BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 VSAEMSGCSS KSHRRTSLPC IPREQLMGHS EWDHKRGPRG SQSSGTSITV ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- ---SGTSITV bmy_12156T0/1-1000 ---------- ---------- ---------- ---------- SQSPGTSITV 351 400 ENSTTRP00000006273/1-1131 DIAVMGEAHG LITDLLADPS LPPNVCTSLR AVSNLLSTQL TIQAIHKPRV BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 DIAVMGEAHG LITDLLADPS LPPNVCTSLR AVSNLLSTQL TFQAIHKPRV ENSBTAP00000022940/1-800 DIAVMGEAHG LITDLLADPS LPPNVCTSLR AVSNLLSTQL TIQAIHKPRV bmy_12156T0/1-1000 DIAVMGEAHG LITDLLADPS LPPNVCTSLR AVSNLLSTQL TIQAIHKPRV 401 450 ENSTTRP00000006273/1-1131 NPVASFSENY TCSDSEESSE KDKLALPK-- ---------- ---------- BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 NPVTSLSENY TCSDSEESSE KDKLAIPK-- ---------- ---------- ENSBTAP00000022940/1-800 NPIVSFSENY TCSDSEESSE KDKLAIPK-- ---------- ---------- bmy_12156T0/1-1000 NPIVSFSENY TCSDSEESSE KDKLAIPKIK TLVRGPVLML KLVIENMLGN 451 500 ENSTTRP00000006273/1-1131 --------RL RRSLPPGLLR RVSSTWTTTT SATGLPTLEP APVRRDRSAS BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 --------RL RRSLPPGLLR RVSSTWTTTT SATGLPTLEP APVRRDRSTS ENSBTAP00000022940/1-800 --------RL RRSLPPGLLR RVSSTWTTTT SATGLPTLEP APVRRDRSAS bmy_12156T0/1-1000 KINAPSSQRL RRSLPPGLLR RVSSTWTTTT SATGLPTLEP APVRRDRSAS 501 550 ENSTTRP00000006273/1-1131 IKLHEAPSSS ---PDSWKNS VMMTLTKSRS FTSSYAVAAS NHVKAKKQNR BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 IKLQEAPSSS ---PDSWNNP VMMTLTKSRS FTSSYAISAA NHVKAKKQSR ENSBTAP00000022940/1-800 IKLHEAPSSS AINPDSWKNP VMMTLTKSRS FTSSYAVSAS NHVKAKKQNR bmy_12156T0/1-1000 IKLHEAPSSS AINPDSWKNS VMMTLTKSRS FTSSYAVAAS NHVKAKKQNR 551 600 ENSTTRP00000006273/1-1131 P--------- ---------- ---------- ---------- ---------- BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 P--------- ---------- ---------- ---------- ---------- ENSBTAP00000022940/1-800 P--------- ---------- ---------- ---------- ---------- bmy_12156T0/1-1000 PVSVKKENYF PEKYRKGEVF KFGENTIQDL CEPFEKAHTS ATKRPKSTVD 601 650 ENSTTRP00000006273/1-1131 ---------- ---------- ---------- ---------- --GSLVKISP BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 ---------- ---------- ---------- ---------- --GALAKISP ENSBTAP00000022940/1-800 ---------- ---------- ---------- ---------- --GSLVKISP bmy_12156T0/1-1000 RRFSFSFKQY FTLRWSESSK KTMLIKVLFD AQKVVSLKTW MVSSLVKISP 651 700 ENSTTRP00000006273/1-1131 LSSPSSSPLH GTPASSPVSK ISAVQFPESA DATGKQGLSS HRAVTYTQSA BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 LSSPCSSPLQ GTPASSLVSK ISAVQFPESA DTTAKQSLGS HRALTYTQSA ENSBTAP00000022940/1-800 LSSPCSSPLH GTPASSPVSK VSAVQFPESS DTTAKSGLSS HRALTYTQSA bmy_12156T0/1-1000 LSSPSSSPLH GTPASSPVSK ISAVQFPESA DATAKQGLSS HRVVTYTQSA 701 750 ENSTTRP00000006273/1-1131 PDLSSQILTP PFICSXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 PDLSPQILTP PVICSSCGRP YSQGNPADEP LERSGVATRT PSRTDDTAQV ENSBTAP00000022940/1-800 PDLSPQILNP PVICSSCGRP YSQGTSADGP LERSGAAIRT PTRTDDITQV bmy_12156T0/1-1000 PDLSPQILTP PVICSSCGRP YSQGTPADGP LER------- ----NDTTQV 751 800 ENSTTRP00000006273/1-1131 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXDKPI BACU016335/1-302 ---------- ---------- ---------- -MNDCS---- ---------- ENSP00000351957/1-1141 TSDYETNNNS DSSDIVQNED ETECLREPLR KASACSTYAP ETMMFLDKPI ENSBTAP00000022940/1-800 TSDYETNNNS DSSDIVQNED ETEGPREALR KTSSCSTYAP ETMMFLEKPI bmy_12156T0/1-1000 TSDYETNNNS DSSDIVQNED ETECPSEPLR KTSAWSTYTP EAMIFLDKPI 801 850 ENSTTRP00000006273/1-1131 LAPEPLVMDN LDSIMEQLNT WNFPIFDLVE KIGRKCGRIL SQVSYRLFED BACU016335/1-302 ---------- ---------- ---------- ---------- ----FALVTD ENSP00000351957/1-1141 LAPEPLVMDN LDSIMEQLNT WNFPIFDLVE NIGRKCGRIL SQVSYRLFED ENSBTAP00000022940/1-800 LAPEPLVMDN LDSIMEQLNT WNFPIFDLVE KIGRKCGRIL SQVSYRLFED bmy_12156T0/1-1000 LAPEPLVMDN LDSIMEQLNT WNFPIFDLVE KIGRKSGRIL SQVSYRLFED 851 900 ENSTTRP00000006273/1-1131 MGLFEAFKIP VREFMNYFHA LEIGYREIPY HNRIHATDVL HAVWYLTTQP BACU016335/1-302 ---------- ---------- ---------- HNRIHATDVL HAVWYLTTQP ENSP00000351957/1-1141 MGLFEAFKIP IREFMNYFHA LEIGYRDIPY HNRIHATDVL HAVWYLTTQP ENSBTAP00000022940/1-800 MGLFEAFKIP VREFMNYFHA LEIGYREIPY HNRIHATDVL HAVWYLTTQP bmy_12156T0/1-1000 MGLFEAFKIP VREFMNYFHA LEIGYREIPY HNRIHATDVL HAVWYLTTQP 901 950 ENSTTRP00000006273/1-1131 IPGLSTVIND HGSASDSDSD SGFTHGHMGY VFSKMCNVPD DKYGCLSGNI BACU016335/1-302 IPGLSTVIND HGSASDSDSD SGFTHGHMGY VFSKMCSVPD DKYGCLSGNI ENSP00000351957/1-1141 IPGLSTVIND HGSTSDSDSD SGFTHGHMGY VFSKTYNVTD DKYGCLSGNI ENSBTAP00000022940/1-800 IPGLSTVIND HGSASDSDSD SGFTHGHMGY VFSKMYNVPD DKYGCLSGNI bmy_12156T0/1-1000 IPGLSTVIND HGSASDSDSD SGFTHGHMGY VFSKMCSVPD DKYGCLSGNI 951 1000 ENSTTRP00000006273/1-1131 PALELMALYV AAAMHDFDHP GRTNAFLVAT SAPQAVLYND RSVLENHHAA BACU016335/1-302 PALELMALYV AAAMHDFDHP GRTNAFLVAT SAPQAVLYND RSVLENHHAA ENSP00000351957/1-1141 PALELMALYV AAAMHDYDHP GRTNAFLVAT SAPQAVLYND RSVLENHHAA ENSBTAP00000022940/1-800 PALELMALYV AAAMHDYDHP GRTNAFLVAT SAPQAVLYND RSVLENHHAA bmy_12156T0/1-1000 PALELMALYV AAAMHDFDHP GRTNAFLVAT SAPQAVLYND RSVLENHHAA 1001 1050 ENSTTRP00000006273/1-1131 AAWNLFMSRP EYNFLVNLDH VEFKHFRFLV IEAILATDLK KHFDFVAKFN BACU016335/1-302 AAWNLFMSRP EYNFLVNLDH VEFKHFRFLV IEAILATDLK KHFDFVAKFN ENSP00000351957/1-1141 AAWNLFMSRP EYNFLINLDH VEFKHFRFLV IEAILATDLK KHFDFVAKFN ENSBTAP00000022940/1-800 AAWNLFMSRP EYNFLVNLDH VEFKHFRFLV IEAILATDLK KHFDFVAKFN bmy_12156T0/1-1000 AAWNLFMSRP EYNFLVNLDH VEFKHFRFLV IEAILATDLK KHFDFVAKFN 1051 1100 ENSTTRP00000006273/1-1131 AKVNDEVGID WTNENDRLLV CQMCIKLADI NGPAKFKELH LQWTEGIVNE BACU016335/1-302 AKVNDEAGID WTNENDRLLV CQMCIKLADI NGPAKFKELH LQWTEGIVNE ENSP00000351957/1-1141 GKVNDDVGID WTNENDRLLV CQMCIKLADI NGPAKCKELH LQWTDGIVNE ENSBTAP00000022940/1-800 AKVNDEVGID WTNENDRLLV CQMCIKLADI NGPAKSKELH LQWTEGIVNE bmy_12156T0/1-1000 AKVNDEAGID WTNENDRLLV CQMCIKLADI NGPAKFKELH LQWTEGIVNE 1101 1150 ENSTTRP00000006273/1-1131 FYEQGDEEAS LGLPISPFMD RSAPQLANLQ ESFISHIVGP LCNSYDSAGL BACU016335/1-302 FYEQGDEEAS LGLPISPFMD RSAPQLANLQ ESFISHIVGP LCNSYDSXXX ENSP00000351957/1-1141 FYEQGDEEAS LGLPISPFMD RSAPQLANLQ ESFISHIVGP LCNSYDSAGL ENSBTAP00000022940/1-800 FYEQGDEEAS LGLPISPFMD RSAPQLANLQ ESFISHIVGP LCNSYDSAGL bmy_12156T0/1-1000 FYEQGDEEAS LGLPISPFMD RSAPQLANLQ ESFISHIVGP LCNSYDSAGL 1151 1200 ENSTTRP00000006273/1-1131 MPGKWVEDSD ESGDTDDPEE EEEE--APNE EETCKNSESP RKKTFKRRKV BACU016335/1-302 XXXXXXXXXX XXXXXXXXQQ D--------- ---------- ---------- ENSP00000351957/1-1141 MPGKWVEDSD ESGDTDDPEE EEEEAPAPNE EETCENNESP KKKTFKRRKI ENSBTAP00000022940/1-800 MPGKWVEDSD ESGDTDDPEE EEEE--APNE EETCENNESP RKKIFKRRKV bmy_12156T0/1-1000 MPGKWVEDSD ESGDTDDPEE EEE---APNE EETCKNSESP RKKTFKRRKV 1201 1250 ENSTTRP00000006273/1-1131 YCQITQHLLQ NHKMWKKVIE EEQRLAGIED PSLDQSPQQH PSDQIQAIKE BACU016335/1-302 ---------- ---------- ---------- ---------- ---------- ENSP00000351957/1-1141 YCQITQHLLQ NHKMWKKVIE EEQRLAGIEN QSLDQTPQSH SSEQIQAIKE ENSBTAP00000022940/1-800 YCQITQHLLQ NHKMWKKVIE EEQRLAGIE- ---DQSPQQH PSEQIQAIRE bmy_12156T0/1-1000 YCQITQHLLQ NHKMWKKVIE EEQRLVGIGD QSLDQSPQQH PSEQIQAIKE 1251 1300 ENSTTRP00000006273/1-1131 EDEEKGKPRG DETPTPKPNQ BACU016335/1-302 ---------- ---------- ENSP00000351957/1-1141 EEEEKGKPRG EEIPTQKPDQ ENSBTAP00000022940/1-800 EDEEKGKQKG EETPAPKPNQ bmy_12156T0/1-1000 EDEEKGKPRG EETPTPKPNQ