KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:27 2014 Check: 00 .. Name: ENSP00000365107/1-879 Len: 897 Check: 923 Weight: 1.00 Name: ENSBTAP00000022950/1-880 Len: 897 Check: 5919 Weight: 1.00 Name: ENSTTRP00000015204/1-860 Len: 897 Check: 1614 Weight: 1.00 Name: bmy_07527T0/1-897 Len: 897 Check: 9815 Weight: 1.00 Name: BACU001744/1-881 Len: 897 Check: 6123 Weight: 1.00 // 1 50 ENSP00000365107/1-879 MDPTAGSKKE PGGGAATEEG VNRIAVPKPP SIEEFSIVKP ISRGAFGKVY ENSBTAP00000022950/1-880 MEPTMGGEME SGGGAATGEC VNRIPVPRPP SIEEFTIVKP ISRGAFGKVY ENSTTRP00000015204/1-860 METTVGGEME GGECTPTGEF VNRIPVPRPP SIEEFTIVKP ISRGAFGKVY bmy_07527T0/1-897 METTAGGEME SGGGTPTGEF VNRIPVPRPP SIEEFTIVKP ISRGAFGKVY BACU001744/1-881 METTAGGEME SGGGTPTGEF VNRIPVPRPP SIEEFTIVKP ISRGAFGKVY 51 100 ENSP00000365107/1-879 LGQKGGKLYA VKVVKKADMI NKNMTHQVQA ERDALALSKS PFIVHLYYSL ENSBTAP00000022950/1-880 LGQKGNRLYA VKVVKKADMI NKNMTHQVQA ERDALALSKS PFIVHLYYSL ENSTTRP00000015204/1-860 LGQKG-RLYA VKVVKKADMI NKNMTHQVQA ERDALALSKS PFIVHLYYSL bmy_07527T0/1-897 LGQKGBRLYA VKVVKKADMI NKNMTHQVQA ERDALALSKS PFIVHLYYSL BACU001744/1-881 LGQKGNRLYA VKVVKKADMI NKNMTHQVQA ERDALALSKS PFIVHLYYSL 101 150 ENSP00000365107/1-879 QSANNVYLVM EYLIGGDVKS LLHIYGYFDE EMAVKYISEV ALALDYLHRH ENSBTAP00000022950/1-880 QSANNVYLVM EYLIGGDVKS LLHIYGYFDE EMAVKYISEV ALALDYLHRH ENSTTRP00000015204/1-860 QSANNVYLVM EYLIGGDVKS LLHIYGYFDE EMAVKYISEV ALALDYLHRH bmy_07527T0/1-897 QSANNVYLVM EYLIGGDVKS LLHIYGYFDE EMAVKYISEV ALALDYLHRH BACU001744/1-881 QSANNVYLVM EYLIGGDVKS LLHIYGYFDE EMAVKYISEV ALALDYLHRH 151 200 ENSP00000365107/1-879 GIIHRDLKPD NMLISNEGHI KLTDFGLSKV TLNR------ ---------D ENSBTAP00000022950/1-880 GIIHRDLKPD NMLISNEGHI KLTDFGLSKV TLNR------ ---------D ENSTTRP00000015204/1-860 GIIHXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX------ ---------X bmy_07527T0/1-897 GIIHRDLKPD NMLISNEGHI KLTDFGLSKV TLNRVEVFEE YHILFFPYID BACU001744/1-881 EIIHRDLKPD NMLISNEGHI KLTDFGLSKV TLNR------ ---------D 201 250 ENSP00000365107/1-879 INMMDILTTP SMAKPRQD-Y SRTPGQVLSL ISSLGFNTPI AEKNQDPANI ENSBTAP00000022950/1-880 INMMDILTTP SMAKPRQD-Y SRTPGQVLSL ISSLGFHTPV AEGNHDTANV ENSTTRP00000015204/1-860 INMMDILTTP SMAKPRQDYY SRTPGQVLSL ISSLGFHTPV AEKSQDSANI bmy_07527T0/1-897 INMMDILTTP SMAKPRQDYY SRTPGQVLSL ISSLGFHTPV AEKSQDSANI BACU001744/1-881 INMMDILTTP SMAKPRQGYY SRTPGQVLSL ISSLGFHTPV AEKSQDSANI 251 300 ENSP00000365107/1-879 LSACLSETSQ LSQGLVCPMS VDQKDTTPYS SKLLKSCLET VASNPGMPVK ENSBTAP00000022950/1-880 LSTQVSETSP LSQGLTCPMS VDQKDTTPYS SKLLKSCPEM VASHPRMPVK ENSTTRP00000015204/1-860 LSTHVSETSQ LSQGLTCPMS IDQKDITPYS SKLLKSCLET VASHPGMPVK bmy_07527T0/1-897 LSTHVSETSQ LSQGLTCPMS IDQKDITPYS SKLLKSCLET VASHPGMPVK BACU001744/1-881 LSTHVSETSQ LSQGLTCPMS IDQKDITPYS SKLLNSCLET VASHPGMPVK 301 350 ENSP00000365107/1-879 CLTSNLLQSR KRLATSSASS QSHTFISSVE SECHSSPKWE KDCQESDEAL ENSBTAP00000022950/1-880 CLTSHLLQSR KRLATSSTSS PSHTFISSME SECHSSPRWE KDCQESDDAA ENSTTRP00000015204/1-860 CLTSHLLQSR KRLATSSTSS QSHTFMSSVE SECHSSPRWE KDCQESDNTV bmy_07527T0/1-897 CLTSHLLQSR KRLATSSTSS QSHTFMSSVE SECHSSPRWE KDCQESDNAV BACU001744/1-881 CLTSHLLQSR KRLATSSTSS QSHTFMSSVE SECHSSPRWE KDCQESDNAV 351 400 ENSP00000365107/1-879 GPTMMSWNAV EK-LCAKSAN AIETKGFNKK DLELALSPIH NSSALPTTGR ENSBTAP00000022950/1-880 GSTMMSWNTV EKPLCTKSVD AMETKSFNER DLELALSPIH NSSVVPATGN ENSTTRP00000015204/1-860 GSTMMSWNTV EKPLGTKSTN AMETKSFNKR DRELAVSPIK KKKD------ bmy_07527T0/1-897 GSTMMSCNTV EKPLCTKSTN AMETKSFNKR DLELAVSPIH NSSADPATGN BACU001744/1-881 GSTMMSCNTV EKPLCTKSTN AMETKSFNKR DLELAVSPIH NSSADPATGN 401 450 ENSP00000365107/1-879 SCVNLAKKCF SGEVSWEAVE LDVNNINMDT DTSQLGFHQS NQWAVDSGGI ENSBTAP00000022950/1-880 SYVNLAKKCS SGEVSWEARE LDVNNINMTA DTSQYCFHES NQRAVDSGGM ENSTTRP00000015204/1-860 ---------- -----WEARE LDVNNIHLAA DTSQSGYHQS HQCAVDSSGV bmy_07527T0/1-897 SCGNLAGKCS SGEVSWEARE LDVNNIHLAA DTSQSGYHQS HQCAVDSSGV BACU001744/1-881 SCGNLAEKCS SGEVSWEARE LDVNNIHLAA DTSQSGYHQS HQCAVDSSGV 451 500 ENSP00000365107/1-879 SEEHLGKRSL KRNFELVDSS PCKKIIQNKK TCVEYK-HNE MTNCYTNQNT ENSBTAP00000022950/1-880 TEEHLGKRSC KRIFELVDSS PRQGIIPNKK SCFEYECSNE MRDCYATQRT ENSTTRP00000015204/1-860 TEEHLGKRSC KRSFELVDSS PCQEIIQNKK NCIEYKSSNE MRDGYVNQRT bmy_07527T0/1-897 TEEHLGKRSC KRSFELVDSS PCQEIIQNKK NCIEYKSSNE MRDGYANQRT BACU001744/1-881 TEEHLGKRSC KRSFELVDSS PCQEIIQNKK NCIEYKSSNE MRDGYANQST 501 550 ENSP00000365107/1-879 GLTVEVQDLK LSVHKSQQND CANKENIVNS FTDKQQTPEK LPIPMIAKNL ENSBTAP00000022950/1-880 GFAFEVQDLK LLVYRDQQND CVNKENVGSS FTDKHQTPEK SPVPMIEKNL ENSTTRP00000015204/1-860 GLTAEVQDLK LSVYRDQQND GANKENMGNS FIDKQQTPEK SPVPMIAKNL bmy_07527T0/1-897 GLTAEVQDLK LSVYRDQQND GANKENMGNS FIDKQQTPEK SPVPXIAKNL BACU001744/1-881 GLTAEVQDLK LSVYRDQQND GANKENMGNS FIDKQQTPEK SPVPMIAKNL 551 600 ENSP00000365107/1-879 MCELDEDCEK NSKRDYLSSS FLCSDDDRAS KNISMNSDSS FPGISIMESP ENSBTAP00000022950/1-880 MCELDDDCDK NSKKDYLSSS FLCSDGDRTP KSIHMDSDSS FPGISIMESP ENSTTRP00000015204/1-860 MCELDDDCDK NSKKDYLSSS FLCSDDDRTP KSICMDSDSS FPGISIMESP bmy_07527T0/1-897 MCELDDDCDK SSKKDYLSSS FLCSDDDRTP KSIRMDSDSS FPGISIMESP BACU001744/1-881 MCELDDDCDK SSKKDYLSSS FLCSDDDRTP KSIRMDSDSS FPGISIMESP 601 650 ENSP00000365107/1-879 LESQPLDSDR SIKESSFEES NIEDPLIVTP DCQEKTSPKG VENPAVQESN ENSBTAP00000022950/1-880 LGGQSLDPDK NIKESSLEES NIEDLLPVSP SCQESTLPKG VECPTIQDSN ENSTTRP00000015204/1-860 LGRQSLDPDK SIKESSLEES NIEDLLSASP SCQESTLPRG DESPAVQDSN bmy_07527T0/1-897 LGRQSLDPDK SNKESSLEES NIEDLLPASP SCQESTLPRG DESPAVQDSN BACU001744/1-881 LGRQSLHPDK SIKESSLEES NIEDLLPASP SCQEGTLPRG DESPAVQDSN 651 700 ENSP00000365107/1-879 QKMLGPPLEV LKTLASKRNA VAFRSFNSHI NASNNSEPSR MNMTSLDAMD ENSBTAP00000022950/1-880 QKMLAPSSEV LKPLTSKRNA VAFRSFNSHI NASNSSEPSK MSITSLDMMD ENSTTRP00000015204/1-860 RKMLAPSLEA LKTLTSKRNA VAFRSFNSHI NASNSSEPSK MSITSLDMMD bmy_07527T0/1-897 RKMLAPSLEA LKTLTSKRNA VAFRSFNSHI NASNSSEPSK MSITSLDVMD BACU001744/1-881 RKMLAPSLEA LKTLTSKRNA VAFRSFNSHI NASNSSEPSK MSITSLDVMD 701 750 ENSP00000365107/1-879 ISCAYSGSYP MAITPTQKRR SCMPHQQTPN QIKSGTPYRT PKSVRRGVAP ENSBTAP00000022950/1-880 VSCAYSGSYP TAITPTQRER SDMPY-QTPN QVKSETPYRT PKSVRRGAAP ENSTTRP00000015204/1-860 ISCACSGSYP MAITPTQKER SYMPYQQTPD QVKSGTPYRT PKSVRRGAAP bmy_07527T0/1-897 ISCACSGSYP MAITPTQKER SYMPYQQTPN QVKSGTPYRT PKSVRRGAAP BACU001744/1-881 ISCACSGSYP MAITPTQKER SYMPY-QTPN QVKSGTPYRT PKSVRRGAAP 751 800 ENSP00000365107/1-879 VDDGRILGTP DYLAPELLLG RAHGPAVDWW ALGVCLFEFL TGIPPFNDET ENSBTAP00000022950/1-880 VDDGRILGTP DYLAPELLLA RAHGPAVDWW ALGVCLFEFL TGIPPFNDET ENSTTRP00000015204/1-860 VDGGRILGTP DYLAPELLLG RAHGPAVDWW ALGVCLFEFL TGIPPFNDET bmy_07527T0/1-897 VDDGRILGTP DYLAPELLLG RAHGPAVDWW ALGVCLFEFL TGIPPFNDET BACU001744/1-881 MDDGRILGTP DYLAPELLLG RAHGPAVDWW ALGVCLFEFL TGIPPFNDET 801 850 ENSP00000365107/1-879 PQQVFQNILK RDIPWPEGEE KLSDNAQSAV EILLTIDDTK RAGMKELKRH ENSBTAP00000022950/1-880 PQQVFQNILK RDIPWPEGEE KLSDNAQSAV DILLTIDDTK RAGMKELKHH ENSTTRP00000015204/1-860 PQQVFQNILK RDIPWPEGEE KLSDNAQSAV EILLTIDDTK RAGMKELKHH bmy_07527T0/1-897 PQQVFQNILK RDIPWPEGEE KLSDNAQSAV EILLTIDDTK RAGMKELKHH BACU001744/1-881 PQQVFQNILK RDIPWPEGEE KLSDNAQSAV EILLTIDDTK RAGMKELKHH 851 900 ENSP00000365107/1-879 PLFSDVDWEN LQHQTMPFIP QPDDETDTSY FEARNTAQHL TVSGFSL ENSBTAP00000022950/1-880 PLFSGVDWEN LQHQKMPFIP QPDDETDTSY FEARNNAQHL TVSGFSL ENSTTRP00000015204/1-860 PLFSDVDWEN LQHQTMPFIP QPDNETDTSY FEARNNAQHL TVSGFSL bmy_07527T0/1-897 PLFSDVDWEN LQHQTMPFIP QPDNETDTSY FEARNNAQHL TVSGFSL BACU001744/1-881 PLFSDVDWEN LQHQTMPFIP QPDNETDTSY FEARNNAQHL TVSGFSL