KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:19:27 2014 Check: 00 .. Name: ENSP00000240316/1-576 Len: 598 Check: 9326 Weight: 1.00 Name: ENSBTAP00000022956/1-571 Len: 598 Check: 3233 Weight: 1.00 Name: bmy_11957T0/1-572 Len: 598 Check: 4546 Weight: 1.00 Name: ENSTTRP00000007680/1-574 Len: 598 Check: 1555 Weight: 1.00 // 1 50 ENSP00000240316/1-576 MAASETVRLR LQFDYPPPAT PHCTAFWLLV DLNRCRVVTD LISLIRQRFG ENSBTAP00000022956/1-571 MAASETVRLR LQFDYPPPGA PHCTSFWLLI DLNGCRVVTD LISLIRQRFG bmy_11957T0/1-572 MAASETVRLR LQFDYPPPAT PHCTSFWLLI DLNRCRVVTD LISLIRQRFG ENSTTRP00000007680/1-574 MAASETVRLR LQFDYPPPAT PHCTSFWLLI DLNRCRVVTD LISLIRQRFG 51 100 ENSP00000240316/1-576 FSSGAFLGLY LEGGLLPPAE SARLVRDNDC L--------R VKLEERGVAE ENSBTAP00000022956/1-571 FSSGALLGLY LEGALLPPAE SARLVRDNDC L--------R VKLEERGIAE bmy_11957T0/1-572 FSSGALLGLY LEGGLLPPTE SARLVRDNDC LSFLSCSFDR VKLEERGVAE ENSTTRP00000007680/1-574 FSSGALLGLY LEGGLLPPAE SARLVRDNDC L--------K VKLEERGVAE 101 150 ENSP00000240316/1-576 NSVVISNGD- INLSLRKAKK RAFQLEEGEE TEPDCKYSKK HWKSRENNNN ENSBTAP00000022956/1-571 SPVTVSNGDS IRLSPRKAKK RAFKLDEDEE TELDYRNSKK HWK-RHENNN bmy_11957T0/1-572 SPVTVSNGDS TRLLPRKAKK RAFKLEEDEE TELDYKNSKK HWK-RHENNN ENSTTRP00000007680/1-574 SPATVNNGDS TRLLPRKAKK RAFKLEEDEE TELDYKNSKK RWK-RHENNN 151 200 ENSP00000240316/1-576 NEKVLDLEPK AVTDQTVSKK NKRKNKATCG TVGDDNEEAK RKSPKKKEKC ENSBTAP00000022956/1-571 SEKTLDLEPK ATTDQSVSKK NKRKNKAMCD AVEVDDGETE KKLPKKKEKR bmy_11957T0/1-572 SEKTLDLEPK AVTDRSVSKK NKRKNKATCG VVDADGGETK RKSPKKKEKC ENSTTRP00000007680/1-574 SEKTLDLEPK AVTDQSVSKK NKRKKKATCG VVDADGGETK RKSPKKTEKC 201 250 ENSP00000240316/1-576 EYKKKAKNPK SPKVQAVKDW ANQRCSSPKG -SARNSLVKA KRKGSVSVCS ENSBTAP00000022956/1-571 EYKKHAKTPK SSKAQSVKEW TIQKCS-PKA LPARNSLVKA KRKGGMVVRT bmy_11957T0/1-572 EYKKQAKTPK SPKAQSVKEW TILKCSPPKG PPARNSLVKA KRKGRTGIHT ENSTTRP00000007680/1-574 EYKKQAKTPK SSKAQSVKEW TILKYSPPKG PAARNSLVKA KRKGGPGIPA 251 300 ENSP00000240316/1-576 KESPSSSSES ESCDESISDG PSKVTLEARN SSEKLPTELS KEEPSTKNTT ENSBTAP00000022956/1-571 KDSPDSSSES ESYHESTSDG LSNVILEVRH SSEKISTDVS KEGSSVKTTA bmy_11957T0/1-572 KDSPDSSSES ESYHESTSDG LSNVILEVRH SPEKISTEVS KEGSSMKTTT ENSTTRP00000007680/1-574 KESPDDSSES ESYHESTSDG LSNVILEVTH SPEKISTEVS KEGSSMKTTT 301 350 ENSP00000240316/1-576 ADKLAIKLGF SLTPSKGKTS GTTSSSSDSS AESDDQCLMS SSTPECAAGF ENSBTAP00000022956/1-571 ANKVAPKTGF TSVPVKGKTS RTSSSSSDSS SESDDQCVMP KSTPECTAEF bmy_11957T0/1-572 ADEVAAKTGF TSTRIKGKTS RTSSSSSDSS SESDDQCVMS KSTPVCTADF ENSTTRP00000007680/1-574 ANKGAANTGF TSTPIQGKTS RTSSSSSDAS SESDNQCVMS KSTPVCTADF 351 400 ENSP00000240316/1-576 LKTVGLFAGR GRPGPGLSSQ TAGAAGWRRS GSNGGGQA-- -PGASPSVSL ENSBTAP00000022956/1-571 LKTVGLFVGR NCPGP--SSQ APNTAGWKQS DPNSGSRTQT VLCPPPNVTL bmy_11957T0/1-572 LKTVGLFAGK CCPGP--SSQ VPNAAGWKQS DSNGGRQA-- -LGPPPNVTL ENSTTRP00000007680/1-574 LKTVGLFAGK RCPGP--SSQ VPNAAGWKQS DSNGGRQA-- -LGPPPNVTL 401 450 ENSP00000240316/1-576 PASLGRGWGR EENLFSWKGA KGRGMRGRGR GRGHPVSCVV NRSTDNQRQQ ENSBTAP00000022956/1-571 PASLGRGWGR GEDLLSWKGA RGRGMRGRGR GRGHAVPYVL NRNADYQKQQ bmy_11957T0/1-572 PITLGRGWSR GEDLLSWKGA RGRGMRGRGR GRGHAVPCVL NRNADYQKQQ ENSTTRP00000007680/1-574 PITLGRGWSR GEDLLSWKGA RGRGMRGRGR GRGHAVPCVL NRNADYQKQQ 451 500 ENSP00000240316/1-576 QLNDVVKNSS TIIQNPVETP KKDYSLLPLL AAAPQVGEKI AFKLLELTSS ENSBTAP00000022956/1-571 QLNEMVTNSS TIIQNPIETQ KKDYSLLPLL AAAPQVGEKI AFKLLELTSN bmy_11957T0/1-572 QLNEMVTNSS TVIQNPIETH KKDYSLLPLL AAAPQVGEKI AFKLLELTSD ENSTTRP00000007680/1-574 QLNEMVTNSS TVIQNPIETH KKDYSLLPLL AAAPQVGEKI AFKLLELTSD 501 550 ENSP00000240316/1-576 YSPDVSDYKE GRILSHNPET QQVDIEILSS LPALREPGKF DLVYHNENGA ENSBTAP00000022956/1-571 YSPDVSDYKE GRILSHNPET QQVDIEILSS LPAMKEPGKF DLVYHNENGA bmy_11957T0/1-572 YSPDVSDYK- ---------- -------LTT --AVKEPGKF DLVYHNENGA ENSTTRP00000007680/1-574 YSPDVSDYKE GKILSHNPET QQVDIEILSS LPAVKEPGKF DLVYHNENGA 551 600 ENSP00000240316/1-576 EVVEYAVTQE SKITVFWKEL IDPRLIIESP SNTSSTEPA- -------- ENSBTAP00000022956/1-571 EVVEYAVTQE KRITVLWREL IDPRLIIESP SNT------- -------- bmy_11957T0/1-572 EVVEYAVTQE KRITIFWREL IDPRLIIESP SNTKCGASLS MTAPPHGL ENSTTRP00000007680/1-574 EVVEYAVTQE KRITIFWREL IDPRLIIEPP SNTSAELP-- --------