KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:28 2014 Check: 00 .. Name: ENSP00000386896/1-1091 Len: 1533 Check: 9296 Weight: 1.00 Name: ENSBTAP00000022960/1-1073 Len: 1533 Check: 2878 Weight: 1.00 Name: ENSTTRP00000011040/1-1130 Len: 1533 Check: 7555 Weight: 1.00 Name: bmy_09106T0/1-1082 Len: 1533 Check: 9986 Weight: 1.00 Name: BACU010132/1-1508 Len: 1533 Check: 524 Weight: 1.00 // 1 50 ENSP00000386896/1-1091 MAAAGQLCLL YLSAGLLSRL GAAFNLDTRE DNVIRKYGDP GSLFGFSLAM ENSBTAP00000022960/1-1073 MAAAGRLWLL YLSVGLLPRL GTAFNLDTRE DNVIEKTGDS GSLFGFSLAM ENSTTRP00000011040/1-1130 MAAAGRLWLL YLSAGLLPRL GAAFNLDTRE DNVIEKNGDS GSLFGFSLAM bmy_09106T0/1-1082 MEQSPQLFQQ QETRKHLSPA GDKRSAEARG SEAL------ ---------- BACU010132/1-1508 MEQSPQLFQQ QETRKHLSPA GDKRSAEARG SEAL------ ---------- 51 100 ENSP00000386896/1-1091 HWQLQPEDKR LLLVGAPRAE ALPLQRANRT GGLYSCDITA RGPCTRIEFD ENSBTAP00000022960/1-1073 HWQLQPEDKR LLLVGAPRAV ALPLQKANRT GGLYSCDITS RGPCTRIEFD ENSTTRP00000011040/1-1130 HWQLQPEDKR LLLVGAPRAV ALPQQKANRT GGLYSCDITS RGPCPRIDFD bmy_09106T0/1-1082 ---------R RLLVGAPRAV ALPLQKANRT GGLYSCDITS RGPCPRIEFD BACU010132/1-1508 ---------R RLLVGAPRAV ALPLQKANRT GGLYSCDITS RGPCPRIEFD 101 150 ENSP00000386896/1-1091 NDADPTSESK EDQWMGVTVQ SQGPGGKVVT CAHRYEKRQH VNTKQESRDI ENSBTAP00000022960/1-1073 NDADPSSESK EDQWMGVTVQ SQGPGGKVVT CAHRYEKRQH VNTKQESRDI ENSTTRP00000011040/1-1130 NDADPSSESK EDQWMGVTVQ SQGPGGKVVT CAHRYEKRQH VNTKQESRDI bmy_09106T0/1-1082 ND-------- ---------- -----GRYKT CAHRYEKRQH VNTKQESRDI BACU010132/1-1508 NDADPSSESK EDQWMGVTVQ SQGPGGKVVT CAHRYEKRQH VNTKQESRDI 151 200 ENSP00000386896/1-1091 FGRCYVLSQN LRIEDDMDGG DWSFCDGRLR GHEKFGSCQQ GVAATFTKDF ENSBTAP00000022960/1-1073 FGRCYVLSQN LRIEDDMDGG DWSFCDGRLR GHEKFGSCQQ GVAATFTKDF ENSTTRP00000011040/1-1130 FGRCYVLSQN LRIEDDMDGG DWSFCDGRLR GHEKFGSCQQ GVAATFTKDF bmy_09106T0/1-1082 FGRCYVLSQN LRIEDDMDGG DWSFCDGRLR GHEKFGSCQQ GVAATFTKDF BACU010132/1-1508 FGRCYVLSQN LRIEDDMDGG DWSFCDGRLR GHEKFGSCQQ GVAATFTKDF 201 250 ENSP00000386896/1-1091 HYIVFGAPGT YNWKGIVRVE QKNNTFFDMN IFEDGPYEVG GETEHDESLV ENSBTAP00000022960/1-1073 HYIAFGAPGT YNWKGIVRVE QKNNTFFDMN IFEDGPYEVG GETDHDESLV ENSTTRP00000011040/1-1130 HYIAFGAPGT YNWKGIVRVE QKNNTFFDMN IFEDGPYEVG GETDHDESLV bmy_09106T0/1-1082 HYIAFGAPGT YNWKGIVRVE QKNNTFFDMN IFEDGPYEVG GETDHDESLV BACU010132/1-1508 HYIAFGAPGT YNWKGIVRVE QKNNTFFDMN IFEDGPYEVG GETDHDESLV 251 300 ENSP00000386896/1-1091 PVPANSYL-- ---------- ---------- ---------- -------GFS ENSBTAP00000022960/1-1073 PVPANSYL-- ---------- ---------- ---------- -------GFS ENSTTRP00000011040/1-1130 PVPANSYLGL LFLTSISYTD PDQFVYKTQP PREQPDTSPD VMMNSYLGFS bmy_09106T0/1-1082 PVPANSYLGL LFLTSISYTD PDQFVYKTQP PREQPDTSPD VMMNSYLGFS BACU010132/1-1508 PVPANSYLGL LFLTSISYTD PDQFVYKTQP PRERPDTSPD VMMNSYLGFS 301 350 ENSP00000386896/1-1091 LDSGKGIVSK DEITFVSGAP RANHSGAVVL LKRDMKSAHL LPEHIFDGEG ENSBTAP00000022960/1-1073 LDSGKGIVSK DEITFVSGAP RANHSGAVVL LKRDLKSAHL LPEHIFDGEG ENSTTRP00000011040/1-1130 LDSGKGIVSK DEITFVSGAP RANHSGAVVL LKRDLKSAHL LPEHIFDGEG bmy_09106T0/1-1082 LDSGKGIVSK DEITFVSGAP RANHSGAVVL LKRDVKSAHL LPEHIFDGEG BACU010132/1-1508 LDSGKGIVSK DEITFVSGAP RANHSGAVVL LKRDVKSAHL LPEHIFDGEG 351 400 ENSP00000386896/1-1091 LASSFGYDVA VVDLNKDGWQ DIVIGAPQYF DRDGEVGGAV YVYMNQQGRW ENSBTAP00000022960/1-1073 LASSFGYDVA VVDLNKDGWQ DIVIGAPQYF DRSGEVGGAA YVYINQQGRW ENSTTRP00000011040/1-1130 LASSFGYDVA VVDLNKDGWQ DIVIGAPQYF DRSGEVGGAA YVYINQQGRW bmy_09106T0/1-1082 LASSFGYDVA VVDLNKDGWQ DIVIGAPQYF DRSGEVGGAA YVYINQQGRW BACU010132/1-1508 LASSFGYDVA VVDLNKDGWQ DIVIGAPQYF DRSGEVGGAA YVYINQQGRW 401 450 ENSP00000386896/1-1091 NNVKPIRLNG TKDSMFGIAV KNIGDINQDG YPDIAVGAPY DDLGKVFIYH ENSBTAP00000022960/1-1073 NNVKPIRLNG TKDSMFGIAV KNIGDINQDG YPDIAVGAPY DGKGKVFIYH ENSTTRP00000011040/1-1130 NNVKPIRLNG TKDSMFGIAV KNIGDINQDG YPDIAVGAPY DGKGKVFIYH bmy_09106T0/1-1082 NNVKPIRLNG TKDSMFGIAV KNIGDINQDG YPDIAVGAPY DGMGKVFIYH BACU010132/1-1508 NNVKPIRLNG TKDSMFGIAV KNIGDINQDG YPDIAVGAPY DGKGKVFIYH 451 500 ENSP00000386896/1-1091 GSANGINTKP TQVLKGISPY FGYSIAGNMD LDRNSYPDVA VGSLSDSVTI ENSBTAP00000022960/1-1073 GSANGINTKP TQVLEGKSPF FGYSIAGNMD LDRNSYPDVA VGSLSDSVTI ENSTTRP00000011040/1-1130 GSANGINTKP TQILQGKSPF FGYSIAGNMD LDRNSYPDVA VGSLSDSVTI bmy_09106T0/1-1082 GSANGINTKP TQILEGKSPF FGYSIAGNMD LDRNSYPDVA VGSLSDSVTI BACU010132/1-1508 GSANGINTKP TQILEGKSPF FGYSIAGNMD LDRNSYPDVA VGSLSDSVTI 501 550 ENSP00000386896/1-1091 FRSRPVINIQ KTITVTPNRI DLRQKTACGA PSGICLQVKS CFEYTANPAG ENSBTAP00000022960/1-1073 FRSRPVINIQ QTITVTPNRI DLRQKTLCGA PSGICLKVKA CFEYTAKPTG ENSTTRP00000011040/1-1130 FRSRPVINIQ QTITVTPNRI DLHQKMPCGA PSGICLKVKA CFEYTAKPTG bmy_09106T0/1-1082 FRSRPVINIQ QTITVTPNRI DLHQKMPCGA PSGICLKVKA CFEYTAKPTG BACU010132/1-1508 FRSRPVINIQ QTITVTPNRI DLHQKMPCGA PSGICLKVKA CFEYTAKPTG 551 600 ENSP00000386896/1-1091 YNPSISIVGT LEAEKERRKS GLSSRVQFRN QGSEPKYTQE LTLKRQKQKV ENSBTAP00000022960/1-1073 YNPSITIVGT LEAEKERRKS GLSSRVQFRN QGSEPKYSQE LTLNRQKQKA ENSTTRP00000011040/1-1130 YNPSITIAGT LEAEKERRKS GLSSRVQFRN QGSEPKYTQA LTLSRQKQKV bmy_09106T0/1-1082 YNPSITIAGT LEAEKERRKS GLSSRVQFRN QGSEPKYTQE LTLSRQKQKA BACU010132/1-1508 YNPSITIAGT LEAEKERRKS GLSSRVQFRN HGSEPKYTQE LTLSRQKQKV 601 650 ENSP00000386896/1-1091 CMEETLWLQD NIRDKLRPIP ITASVEIQEP SSRRRVNSLP EVLPILNSDE ENSBTAP00000022960/1-1073 CMEETLWLQE NIRDKLRPIP ITASVEIQEP STRRRVNSLP EVLPILNSNE ENSTTRP00000011040/1-1130 CIEETLWLQE NIRDKLRPIP ITASVEIQEP STRRRVNSLP EVLPILNANE bmy_09106T0/1-1082 CMEETLWLQE NIRDKLRPIP ITASVEIQEP STRRRVNSLP EVLPILNSNE BACU010132/1-1508 CMEETLWLQE NIRDKLRPIP ITASVEIQEP STRRRVNSLP EVLPILNSNE 651 700 ENSP00000386896/1-1091 PKTAHIDVHF LKEGCGDDNV CNSNLKLEYK FCTREGNQDK FSYLPIQKGV ENSBTAP00000022960/1-1073 PKFVHTDVHF LKEGCGDDNI CNSNLKLEYK FCTREGNQDK FSYLPIHKGV ENSTTRP00000011040/1-1130 PKSVHTDVHF LKEGCGDDNV CNSNLKLEYK FCTREGNQDK FSYLPIQKGV bmy_09106T0/1-1082 PKSVHTDVHF LKEGCGEDNV CNSNLKLEYK FCTREGNQDK FSYLPIQKGV BACU010132/1-1508 PKSVHTDVHF LKEGCGDDNV CNSNLKLEYK FCTREGNQDK FSYLPIQKGV 701 750 ENSP00000386896/1-1091 PELVLKDQKD IALEITVTNS PSNPRNPTKD GDDAHEAKLI ATFPDTLTYS ENSBTAP00000022960/1-1073 PELVLKDQKD IALEITVTNS PSNPKNPTKD GDDAHEAKLI ATFPDTLTYS ENSTTRP00000011040/1-1130 PELVLKDQKD IALEITVTNS PSNPKNPTKD GDDAHEAKLV ATFPDTLTYS bmy_09106T0/1-1082 PELVLKDQKD IALEITVTNS PSNPKNPTKD GDDAHEAKLI ATFPDTLTYS BACU010132/1-1508 PELVLKDQKD IALEITVTNS PSNPKNPTKD GDDAHEAKLI ATFPDTLTYS 751 800 ENSP00000386896/1-1091 AYRELRAFPE KQLSCVANQN GSQADCELGN PFKRNSNVTF YLVLSTTEVT ENSBTAP00000022960/1-1073 AYRELRAFPE KQLSCVANQN GSQADCELGN PFKRNSSVTF YLILSTTEVT ENSTTRP00000011040/1-1130 AYRELRAFPE KQLSCVANQN GSQADCELGN PFKRNSSVTF YLILSTTEIT bmy_09106T0/1-1082 AYRELRAFPE KQLSCVANQN GSQADCELGN PFKRNSSVTF YLILSTTEIT BACU010132/1-1508 AYRELRAFPE KQLTCVANQN GSQADCELGN PFKRNSSVTF YLILSTTEIT 801 850 ENSP00000386896/1-1091 FDTPDLDINL KLETTSNQDN LAPITAKAKV VIELLLSVSG VAKPSQVYFG ENSBTAP00000022960/1-1073 FDTTDLDINL KLETTSNQDN LASITATAKV VIELLLSVSG VAKPSQVYFG ENSTTRP00000011040/1-1130 FDTTDLDINL KLETTSNQDN LASITATARV VIELLLSVSG VAKPSQVYFG bmy_09106T0/1-1082 FDTTDLDVNL KLETTSNQDN LASITATARV VIELLLSVSG VAKPSQVYFG BACU010132/1-1508 FDTTDLDVNL KLETTSNQDN LASITATARV VIELLLSVSG VAKPSQVYFG 851 900 ENSP00000386896/1-1091 GTVVGEQAMK SEDEVGSLIE YEFRVINLGK PLTNLGTATL NIQWPKEISN ENSBTAP00000022960/1-1073 GTVVGEQAMK SEEDVGSLIE YEFRVINLGK PLKNLGTATL NIQWPKEISN ENSTTRP00000011040/1-1130 GTVIGEQAMK SEEEVGSLIE YEFRVINLGK PLKNLGTATL NIQWPKEISN bmy_09106T0/1-1082 GTVIGEQAMK SEEEVGSLIE YEFRVINLGK PLKNLGTATL NIQWPKEISN BACU010132/1-1508 GTVIGEQAMK SEEEVGSLIE YEFRVINLGK PLKNLGTATL NIQWPKEISN 901 950 ENSP00000386896/1-1091 GKWLLYLVKV ESKGLEKVTC EPQKEINSLN LTESHNSRKK REITEKQIDD ENSBTAP00000022960/1-1073 GKWLLYLVKV ESKGLEKITC EPQGEINFLK LTEAHNSRRK REIAERQTDD ENSTTRP00000011040/1-1130 GKWLLYLVKV ESKGLEKIAC QPQNEINFLK LKEAHSSRKK REIAERQTDD bmy_09106T0/1-1082 GKWLLYLVKV ESKGLEKIAC QPQKEINFLK LKEAHNSRKK REIAERQTDD BACU010132/1-1508 GKWLLYLVKV ESKGLEKIAC QPQKEINFLK LKEAHNSRKK REIAERQTDD 951 1000 ENSP00000386896/1-1091 NRKFSLFAER KYQTLNCSVN VNCVNIRCPL RGLDSKASLI LRSRLWNSTF ENSBTAP00000022960/1-1073 GRKFSLFSER KYQTLNCSVN VNCVNIKCPL RGLDSKASVV LRSRLWNSTF ENSTTRP00000011040/1-1130 GRKLSLFAER KYQTLNCSVN VNCVNIKCPI RGLDSKASVV LRSRLWNSTF bmy_09106T0/1-1082 GRKFSLFAER KYQTLNCSVN VNCVNIGCPL RGLDSKASVV LRSRLWNSTF BACU010132/1-1508 GRKFSLFAER KYQTLNCSVN VNCVNIGCPL RGLDSKASVV LRSRLWNSTF 1001 1050 ENSP00000386896/1-1091 LEEYSKLNYL DILMRAFIDV TAAAENIRLP NAGTQVRVTV FPSKTVAQYS ENSBTAP00000022960/1-1073 LEEYSKMNYL DILVRASIDV IAATENIKLP NAGTQVRVTV FPSKTVAQHS ENSTTRP00000011040/1-1130 LEEYSKMNYL DILVRASIDV TAATENIKLP NAGTQVRVTV FPSKTVAQYS bmy_09106T0/1-1082 LEEYSKMNYL DILVRASIDV TAATENIKLP NAGTQVRVTV FPSKTVAQYS BACU010132/1-1508 LEEYSKMNYL DILVRASIDV TAATENIKLP NAGTQVRVTV FPSKTVAQYS 1051 1100 ENSP00000386896/1-1091 GVPWWIILVA ILAGILMLAL LVFILWKCGF FKRSRYDDSV PRYHAVRIRK ENSBTAP00000022960/1-1073 GVPWWIILVA ILAGILMLGL LVFLLWKCGF FKRNKKDHYD ATYHKAEIHA ENSTTRP00000011040/1-1130 GVPWWIILVA ILAGILMLAL LVFLLWKCGF FKRSRYDDSV PRYHAVRIRK bmy_09106T0/1-1082 GVPWWIILVA ILAGILMLAL LVFLLWKCGF FKRSRYDDSV PRYHAVRIRK BACU010132/1-1508 GVPWWIILVA ILAGILMLAL LVFLLWKCGF FKRSRYDDSV PRYHAVRIRK 1101 1150 ENSP00000386896/1-1091 EEREIKDEKY IDNLEKKQWI T--------- ---------- ---------- ENSBTAP00000022960/1-1073 QPSD------ ------KERL T--------- ---------- ---------- ENSTTRP00000011040/1-1130 EEREIQDEKY NDNLEKKQWI T--------- ---------- ---------- bmy_09106T0/1-1082 EEREIPDEKY NDNLEKKQWI T--------- ---------- ---------- BACU010132/1-1508 EEREIPDEKC NDNLEKKQWI TSRSLTSDSG SGPAPERGVP GQVDFYARFS 1151 1200 ENSP00000386896/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 ---------- ---------- ---------- ---------- ---------- bmy_09106T0/1-1082 ---------- ---------- ---------- ---------- ---------- BACU010132/1-1508 PSPLSMKQFL DFGSVNACEK TSFMFLRQEL PVRLANIMKE ISLLPDNLLR 1201 1250 ENSP00000386896/1-1091 --------KW ---------- ---------- ---------- ---------- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 --------RW ---------- ---------- ---------- ---------- bmy_09106T0/1-1082 --------RW ---------- ---------- ---------- ---------- BACU010132/1-1508 TPSVQLVQSW YIQSLQELLD FKDKSAEDAK TIYDFTDTVI RIRNRHNDVI 1251 1300 ENSP00000386896/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 ---------- ---------- ---------- ---------- ---------- bmy_09106T0/1-1082 ---------- ---------- ---------- ---------- ---------- BACU010132/1-1508 PTMAQGVIEY KESFGVDPVT SQNVQYFLDR FYMSRISIRM LLNQHSLLFG 1301 1350 ENSP00000386896/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 ---------- ---------- ---------- ---------- ---------- bmy_09106T0/1-1082 ---------- ---------- ---------- ---------- ---------- BACU010132/1-1508 GKGKGSLSHR KHIGSINPNC NVVEVIKDGY ENARRLCDLY YINSPELELE 1351 1400 ENSP00000386896/1-1091 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 ---------- ---------- ---------- ---------- ---------- bmy_09106T0/1-1082 ---------- ---------- ---------- ---------- ---------- BACU010132/1-1508 ELNAKSPGQP IQVVYVPSHL YHMVFELFKN AMRATMEHHA DKGVYPPIQV 1401 1450 ENSP00000386896/1-1091 -----NEN-- ---------- ---------- ---------- ---------- ENSBTAP00000022960/1-1073 -----SDA-- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 -----NEN-- ---------- ---------- ---------- ---------- bmy_09106T0/1-1082 -----NEN-- ---------- ---------- ---------- ---------- BACU010132/1-1508 HVTLGNEDLT VKMSDRGGGV PLRKIDRLFN YMYSTAPRPR VETSRAVPLA 1451 1500 ENSP00000386896/1-1091 ---------- ---------- -----ESYS- ---------- ---------- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011040/1-1130 ---------- ---------- -----ESYS- ---------- ---------- bmy_09106T0/1-1082 ---------- ---------- -----ESYS- ---------- ---------- BACU010132/1-1508 GFGYGLPISR LYAQYFQGDL KLYSLEGYGT DAIIYIKALS TESIERLPVY 1501 1550 ENSP00000386896/1-1091 ---------- ---------- ---------- --- ENSBTAP00000022960/1-1073 ---------- ---------- ---------- --- ENSTTRP00000011040/1-1130 ---------- ---------- ---------- --- bmy_09106T0/1-1082 ---------- ---------- ---------- --- BACU010132/1-1508 NKAAWKHYNT NHEADDWCVP SREPKDMTTF RSA