KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:30 2014 Check: 00 .. Name: ENSP00000258534/1-238 Len: 364 Check: 3986 Weight: 1.00 Name: ENSTTRP00000016321/1-237 Len: 364 Check: 3686 Weight: 1.00 Name: ENSBTAP00000022976/1-238 Len: 364 Check: 3690 Weight: 1.00 Name: bmy_08311T0/1-364 Len: 364 Check: 7717 Weight: 1.00 Name: BACU020550/1-238 Len: 364 Check: 5012 Weight: 1.00 // 1 50 ENSP00000258534/1-238 MLCFLRGMAF VPFLLVTWSS AAFIISYVVA VLSGHVNPFL PYI------- ENSTTRP00000016321/1-237 MLCFLRGMAL IPFLLVTWSS AAFIISYVVA VLSGHVNPFL PYI------- ENSBTAP00000022976/1-238 MLCFLRGMAF VPFLLVTWSS AAFIISYVVA VLSGHVNPFL PYI------- bmy_08311T0/1-364 MLCFLRGMAF IPFLLVTWSS AAFIISYVVA VLSGHVNPFL PYIRCPSTAV BACU020550/1-238 MLCFLRGMAF IPFLLVTWSS AAFIISYVVA VLSGHVNPFL PYI------- 51 100 ENSP00000258534/1-238 ---------- ---------- ---------- ------SDTG TTPPESGIFG ENSTTRP00000016321/1-237 ---------- ---------- ---------- ------SDTG TTPPESGIFG ENSBTAP00000022976/1-238 ---------- ---------- ---------- ------SDTG TTPPESGIFG bmy_08311T0/1-364 PTKSYYLCLP NPTTSAFAQY DYLLLETKRK TEKNTLSDTG TTPPESGIFG BACU020550/1-238 ---------- ---------- ---------- ------SDTG TTPPESGIFG 101 150 ENSP00000258534/1-238 FMINFSAFLG AATMYTRYKI VQKQNQTCYF STPVFNLVSL VLGLVGCFGM ENSTTRP00000016321/1-237 FMINFSAFLS AATMYTRYKI VEKQNQTSYF STPVFNLVSL VLGLVGCIGL ENSBTAP00000022976/1-238 FMINFSAFLG AATMYTRYKI VEKQNQTSYF STPVFNLVSL VLGLVGCIGM bmy_08311T0/1-364 FMINFSAFLG AATMYTRYKI VEKQNQTSYF STPVFNLVSL VLGLVGCIGM BACU020550/1-238 FMINFSAFLG AATMYTRYKV VEKQNQTSYF STPVFNLVSL VLGLVGCIGM 151 200 ENSP00000258534/1-238 GIVANFQELA VPVVHDGGAL LAFVCGVVYT LLQSIISYKS CPQWNSLSTC ENSTTRP00000016321/1-237 GIVANFQELT VPVIHDGGAL LAFVCGVVYT LLQSIISYKS CPQWNSLSTC ENSBTAP00000022976/1-238 GIVANFQELA VPVVHDGGAL LAFVCGVVYT LLQSVISYKS CPQWNSLSTC bmy_08311T0/1-364 GIVANFQELA VPVVHDGGAL LAFVCGVVYT LLQSIISYKS CPQWNSLSTC BACU020550/1-238 GIVANFQELA VPVVHDGGAL LAFVCGVVYT LLQSIISYKS CPQWNSLSTC 201 250 ENSP00000258534/1-238 HIRMVISAVS CAAVIPMIVC ASLISITKLE WNPREKDYVY HVVSAICEWT ENSTTRP00000016321/1-237 RIRMAISAVS SAAIIPMIAC ASLISITKLE WNPKE-DYVY HVVSAICEWT ENSBTAP00000022976/1-238 HVRMAISAVS CAAVIPMIAC ASLISITKLE WNPKEKDYVY HVVSAICEWT bmy_08311T0/1-364 RIRMAISAVS SAAVIPMIAC ASLISITKLE WNPKEKDYVY HVVSAICEWT BACU020550/1-238 RIRMAISAVS SAAVIPMIAC ASLISITKLE WNPKEKDYVY HVVSAICEWT 251 300 ENSP00000258534/1-238 VAFGFIFYFL TFIQDFQSVT LRISTEINGD I--------- ---------- ENSTTRP00000016321/1-237 VAFGFIFYFL TFIYDFQSVT LRISTEISGD V--------- ---------- ENSBTAP00000022976/1-238 VAFGFIFYFL TFIHDFQSVT LRISTEINGD V--------- ---------- bmy_08311T0/1-364 VAFGFIFYFL TFIYDFQSVT LRISTEINEK IRCSRKWRPL YFLYRFCFVS BACU020550/1-238 VAFGFIFYFL TFIYDFQSVT LRISTEINGD V--------- ---------- 301 350 ENSP00000258534/1-238 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000016321/1-237 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000022976/1-238 ---------- ---------- ---------- ---------- ---------- bmy_08311T0/1-364 LCIYGNTLKE EFIKNAYGWM FAHFTKCEAG PLLSKTCTWR HFSPKSRMTN BACU020550/1-238 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000258534/1-238 ---------- ---- ENSTTRP00000016321/1-237 ---------- ---- ENSBTAP00000022976/1-238 ---------- ---- bmy_08311T0/1-364 EKQVIPEEEV GLEI BACU020550/1-238 ---------- ----