KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:31 2014 Check: 00 .. Name: ENSP00000352536/1-911 Len: 972 Check: 7425 Weight: 1.00 Name: ENSBTAP00000022977/1-913 Len: 972 Check: 4235 Weight: 1.00 Name: ENSTTRP00000011876/1-752 Len: 972 Check: 2089 Weight: 1.00 Name: bmy_01083T0/1-969 Len: 972 Check: 7735 Weight: 1.00 Name: BACU014553/1-885 Len: 972 Check: 4162 Weight: 1.00 // 1 50 ENSP00000352536/1-911 MDTCGVGYVA LGEAGPVGNM TVVDSPGQEV LNQLDVKTSS EMTSAEASVE ENSBTAP00000022977/1-913 MDTYGVGYMA LEEAGPVGNM TVVDSPGQEV LNQLDVKASS ETTSVEASIE ENSTTRP00000011876/1-752 MDPYGVGCVA LEEAGPVGNM TVVDSPGQEV LKQLDVKASS ETTSVEASVE bmy_01083T0/1-969 MDPYGVGCVA LEEAGPVGNM TVVDSPGQEV LNQLDVKASS ETTSVEASIE BACU014553/1-885 MDSYGVGCVA LEEAGPVGNM TVVDSPGQEV LNQLDVKASS ETTSVEASIE 51 100 ENSP00000352536/1-911 MSLPTPLPGF EDSPDQRRLP PEQESLSRLE QPDLSSEMSK VSKPRASKPG ENSBTAP00000022977/1-913 MPLSTPFPGY EDSLDERRLL PEQESLSRLQ QQDLSSEMSK VPKPRASKPG ENSTTRP00000011876/1-752 TSLSTPLPGF EDSLDERRLP PEQETLSRLE QQDLSSEMSK VPKPRASKPG bmy_01083T0/1-969 TLLPTPLPGF EDSLDERRLP PEQETLSRLE QQDLSSEMSK VPKPRASKPG BACU014553/1-885 TSLPTPLPGF EDSLDERRLP PEQETLSRLE QQDLSSEMSK VPKPRASKPG 101 150 ENSP00000352536/1-911 RKRGGRTRKG PKRPQQPNPP SAPLVPGLLD QSNPLSTPMP KKRGRKSKAE ENSBTAP00000022977/1-913 PKRGGRTRKG PKRPQQPNSP SAPRVPGLLD QSNPLSTPMP KKRGRKSKAD ENSTTRP00000011876/1-752 PKRGGRTRKG PKRPQQPNSP SAPRVPGLLD QSNPLSTPMP KKRGRKSKAD bmy_01083T0/1-969 PKRGGRTRKG PKRPQQPNSP SAPRVPGLLD QSNPLSTPMP KKRGRKSKAD BACU014553/1-885 PKRGGRTRKG PKRPQQPNSP SAPRVPGLLD QSNPLSTPMP KKRGRKSKAD 151 200 ENSP00000352536/1-911 LLLLKLSKDL DRPESQSPKR PPEDFETPSG ERPRRRAAQV ALLYLQELAE ENSBTAP00000022977/1-913 LLLLKLSKGL DQPESPHPKM PPEDFETPPG ERPRRRAAQV ALLYLQELAE ENSTTRP00000011876/1-752 LLLLKLSKGL DQPESPHPKR PPEDFETPPG ERPRRRAAQV ALLYLQELAE bmy_01083T0/1-969 LLLLKLSKGL DQPESPHPKR PPEDFETPPG ERPRRRAAQV ALLYLQELAE BACU014553/1-885 LLLLKLSKGL DQPESPHPKR PPEDFETPPG ERPRRRAAQV ALLYLQELAE 201 250 ENSP00000352536/1-911 ELSTALPAPV SCPEGPKVSS PTKPKKIRQP AACPGGEEVD GAPRDEDFFL ENSBTAP00000022977/1-913 ELSTALPTPV SCPEGPQVSS PTQPKIIQPQ AACLRGEG-D NTARDEDFVL ENSTTRP00000011876/1-752 ELSTALPAPV SCPESPKVSS PTKPKKNQQQ AACHYGEEED DTARDEDFVL bmy_01083T0/1-969 ELSTALPAPV SCPESPKVSS PTKPKKSQQQ AACHYREEED DTARDEDFVL BACU014553/1-885 ELSTALPAPV SCPESPKVSS PTKPKKSQQQ AACHYREEED DTARDEDFVL 251 300 ENSP00000352536/1-911 QVEAEDVEES EGPSESSSEP EPVVPRSTPR GST---SGKQ KPHCRGMAPN ENSBTAP00000022977/1-913 QVEAEEAEES EAPSENSSDP EPAAPRSTTR GSTQFDPQKQ KPHVRGMAHN ENSTTRP00000011876/1-752 QVEAEDGEES EAPSESSSDP EPTVPRSTAR AST---SGKQ KPHCRGVAPN bmy_01083T0/1-969 QVEAEDGEES EAPSESSSDP EPTVPRSTAR GST---SGKQ KPHCRGVAPN BACU014553/1-885 QVEAEDGEES EAPSESSSDP EPTVPRSTTR GST---SGKQ KPHCRGVAPN 301 350 ENSP00000352536/1-911 GLPNHIMAPV WKCLHLTKDF REQKHSYWEF AEWIPLAWKW HLLSELEAAP ENSBTAP00000022977/1-913 GLPNHIMAPV WKCLHLTKDI RDQKHSYWEF AEWIPLAWKW RLLSELEAAP ENSTTRP00000011876/1-752 GLPNHIMAPV WKCLHLTKDL REQKHSYWEF AEWIPLAWKW QLLSELEAAH bmy_01083T0/1-969 GLPNHIMAPV WKCLHLTKDL REQKHSYWEF AEWIPLAWKW QLLSELEAAH BACU014553/1-885 GLPNHIMAPV WKCLHLTKD- ---------- ---------- -----LEAAH 351 400 ENSP00000352536/1-911 YLPQEEKSPL FSVQREGLPE DGTLYRINRF SSITAHPERW DVSFFTGGPL ENSBTAP00000022977/1-913 YLPQEEKSPL FSVQREGLPE DGTLYRINRF SSITAHPERL DVSFFTGGPL ENSTTRP00000011876/1-752 YLPQEEKSPL FSVQREGLPE DGTLYRINRF SSITAHPERW DVSFFTGGPL bmy_01083T0/1-969 YLPQEEKSPL FSVQREGLPE DGTLYRINRF SSITAHPERW DVSFFTGGPL BACU014553/1-885 YLPQEEKSPL FSVQREGLPE DGTLYRINRF SSITAHPERW DVSFFTGGPL 401 450 ENSP00000352536/1-911 WALDWCPVPE GAGASQYVAL FSSPDMNETH PLSQLHSGPG LLQLWGLGTL ENSBTAP00000022977/1-913 WALDWCPVPE GSAASQYVAL FSSPDMNETH SLSQLYSGPG LLQLWDLGTL ENSTTRP00000011876/1-752 WALDWCPVPE GAAASQYVAL FSSPDMNETH PLSQLYSGPG LLQLWDLGTL bmy_01083T0/1-969 WALDWCPVPE GAAASQYVAL FSSPDMNETH PLSQLHSGPG LLQLWDLGTL BACU014553/1-885 WALDWCPVPE GAAASQYVAL FSSPDMNETH PLSQLHSGPG LLQLWDLGTL 451 500 ENSP00000352536/1-911 QQESCPGNRA HFVYGIACDN GCIWDLKFCP SGAWELPGTP RKAPLLPRLG ENSBTAP00000022977/1-913 QQESCLGNRA HFVYGIACDH GCIWDLKFCP SGAWELPGTP RKAPLLPRLG ENSTTRP00000011876/1-752 QQESCPGNRA HFVYGIACDH GCIWDLKFCP SGAWELPGTP RKAPLLPRLG bmy_01083T0/1-969 QQESCPGNRA HFVYGIACDH GCIWDLKFCP SGAWELPGTP RKAPLLPRLG BACU014553/1-885 QQESCPDNRA HFVYGIACDH GCIWDLKFCP SGAWELPGTP RKAPLLPRLG 501 550 ENSP00000352536/1-911 LLALACSDGK VLLFSLPHPE ALLAQQPPDA VKPAIYKVQC VATLQVGSMQ ENSBTAP00000022977/1-913 LLALACSDGK VLLFSLPHPE ALLAQQPLDA VKPAIYKVHC VATLQVGSMQ ENSTTRP00000011876/1-752 LLALACSDGK VLLFSLPHPE ALLAQQPLDA VKPAIYKVQC VATLQVGSMQ bmy_01083T0/1-969 LLALACSDGK VLLFSLPHPE ALLAQQPLDA VKPAIYKVQC VATLQVGSMQ BACU014553/1-885 LLALACSDGK VLLFSLPHPE ALLAQQPLDA VKPAIYKVQC VATLQVGSMQ 551 600 ENSP00000352536/1-911 ATDPSECGQC LSLAWMPTRP HQHLAAGYYN GMVVFWNLPT NSPLQRIRLS ENSBTAP00000022977/1-913 ASEPSECGQC LSLAWMPTRP HHHLAAGYYN GMVVLWNLPT NSPLQRIRLS ENSTTRP00000011876/1-752 ASDPSECGQC LSLAWIPTRP HHHLAAGYYN GMVVFWNLPT NSPLQRIRLS bmy_01083T0/1-969 ASDPSECGQC LSLAWMPTRP HHHLAAGYYN GMVVFWNLPT NSPLQRIRLS BACU014553/1-885 ASDPSECGQC LSLAWMPTRP HHHLAAGYYN GMVVFWNLPT NSPLQRIRLS 601 650 ENSP00000352536/1-911 DGSLKLYPFQ CFLAHDQAVR TLQWCKANSH FLVSAGSDRK IKFWDLRRPY ENSBTAP00000022977/1-913 DGSLKLYPFQ CFLAHDQAVR TLQWCKANSH FLASAGSDRK IKFWDLRRPY ENSTTRP00000011876/1-752 DGSLKLYPFQ CFLAHDQAVR TLQWCKANSH FLVSAGSDRK IKFWDLRRPY bmy_01083T0/1-969 DGSLKLYPFQ CFLAHDQAVR TLQWCKANSH FLVSAGSDRK IKFWDLRRPY BACU014553/1-885 DGSLKLYPFQ CFLAHDQAVR TLQWCKANSH FLVSAGSDRK IKFWDLRRPY 651 700 ENSP00000352536/1-911 EPINSIKRFL STELAWLLPY NGVTVAQDNC YASY------ ---------- ENSBTAP00000022977/1-913 EPINSIKRFL STELAWLLPY NGVTVAQDNC YASY------ ---------- ENSTTRP00000011876/1-752 EPINSIKRFL STELAWLLPY NGVTVAQDNC YASY------ ---------- bmy_01083T0/1-969 EPINSIKRFL STELAWLLPY NGVTVAQDNC YASYGRMERG GALGASPKGW BACU014553/1-885 EPINSIKRFL STELAWLLPY NGVTVAQDNC YASY------ ---------- 701 750 ENSP00000352536/1-911 ---------- ---GLCGIHY IDAGYLGFKA YFTAPRKGTV WSLSGSDWLG ENSBTAP00000022977/1-913 ---------- ---GLCGIHY IDAGYLGFKA YFTAPRKGTV WSLSGSDWLG ENSTTRP00000011876/1-752 ---------- ---GLCGIHY IDAGYLGFKA YFTAPRKGTV WSLSGSDWLG bmy_01083T0/1-969 GALCQIVVGR GGYGLCGIHY IDAGYLGFKA YFTAPRKGTV WSLSGSDWLG BACU014553/1-885 ---------- ---GLCGIHY IDAGYLGFKA YFTAPRKGTV WSLSGSDWLG 751 800 ENSP00000352536/1-911 TIAAGDISGE LIAAILPDMA LNPINVKRPV ERRFPIYKAD LIPYQDSPEG ENSBTAP00000022977/1-913 TIAAGDISGE LIAAILPDMA LNPTNVKRPL DRRFPIYKAD LIPYQDSPEG ENSTTRP00000011876/1-752 TIAAGDISGE LIAAILPDMA LNPINVKRPV DRRF------ ---------- bmy_01083T0/1-969 TIAAGDISGE LIAAILPDMA LNPINVKRPV ERRFPIYKAD LMPYQDSPEG BACU014553/1-885 TIAAGDISGE LIAAILPDMA LNPINVKRPV ERRFPIYKAD LMPYQDSPED 801 850 ENSP00000352536/1-911 PDHSSASSGV PNPPKARTYT ETVNHHYLLF QDTDLGSFHD LLRREPMLRM ENSBTAP00000022977/1-913 QDHTSASSGA PNPPKARTYA ETVNHHYLLF QDTDLRSFHG LPHREPMLRM ENSTTRP00000011876/1-752 ---------- ---------- ---------- ---------- ---------- bmy_01083T0/1-969 QDHSSASSGA PNPPKARTYA ETVNHHYLLF QDTDLGSFHG LPHREPILRM BACU014553/1-885 QDHSSASSGA PNPPKARTYA ETVNHHYLLF QDTDLGSFHG LPHREPILRM 851 900 ENSP00000352536/1-911 QEGEGHSQLC LDRLQLEAIH K--------- ---------- ---------- ENSBTAP00000022977/1-913 QEGEGQTRLC LDRLQLEAIH K--------- ---------- ---------- ENSTTRP00000011876/1-752 ---------- ---------- ---------- ---------- ---------- bmy_01083T0/1-969 QEGEGQTRLC LDRLQLEAIH KVETLSLIFA ILHLISSQLW ASKTHPKATT BACU014553/1-885 QEGEGQTRLC LDRLQLEAIH K--------- ---------- ---------- 901 950 ENSP00000352536/1-911 VRFSPNLDSY GWLVSGGQSG LVRIHFVRGL ASPLGHRMQL ESRAHFNAMF ENSBTAP00000022977/1-913 VRFSPNLDSY GWLVSGGQSG LVRIHFVRGL TCPLGHRMQL ESRAHFSAMF ENSTTRP00000011876/1-752 ---------- ---------- ---------- ---------- ---------- bmy_01083T0/1-969 VRFSPNLDSY GWLVSGGQSG LVRIHFVRAL TCPLGHRMQL ESRAHFNAMF BACU014553/1-885 VRFSPNLDSY GWLVSGGQSG LVRIHFVRAL TCPLGHRMQL ESRAHFNAMF 951 1000 ENSP00000352536/1-911 QPSSPTRRPG FSPTSHRLLP TP ENSBTAP00000022977/1-913 QLASPSPGPG FPPTSHCLLP GP ENSTTRP00000011876/1-752 ---------- ---------- -- bmy_01083T0/1-969 QLASPTKGPG FPPTSHRLLP GP BACU014553/1-885 QLASPTKGPG FPPTSHRLLP GP