KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:34 2014 Check: 00 .. Name: ENSTTRP00000002584/1-1286 Len: 1384 Check: 7396 Weight: 1.00 Name: ENSP00000475943/1-1288 Len: 1384 Check: 4515 Weight: 1.00 Name: BACU001466/1-1333 Len: 1384 Check: 5528 Weight: 1.00 Name: bmy_07582T0/1-1311 Len: 1384 Check: 2586 Weight: 1.00 Name: ENSBTAP00000022981/1-1288 Len: 1384 Check: 1144 Weight: 1.00 // 1 50 ENSTTRP00000002584/1-1286 ---------- ---------- ---------- ---------- ---------- ENSP00000475943/1-1288 ---------- ---------- ---------- ---------- ---------- BACU001466/1-1333 MSLLSSYEGL RQEIQRLAQE NQELRRLVQL IQENQELKLV LRNRGSSLSF bmy_07582T0/1-1311 ---------- ---------- ---------- ---------- ----MGVEPL ENSBTAP00000022981/1-1288 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002584/1-1286 ---------- ---------- ---------- ---------- ------MGSP ENSP00000475943/1-1288 ---------- ---------- ---------- ---------- ------MGSP BACU001466/1-1333 CSSGLLAEVT TSPRLPRRRT IKFKDAERVL PGLPAEESLL DSSPITMGSP bmy_07582T0/1-1311 SSPHPSSAQG CPPVDDPQAS LLTHCLCPVL PGLPAEESLL DSSPITMGSP ENSBTAP00000022981/1-1288 ---------- ---------- ---------- ---------- ------MGGP 101 150 ENSTTRP00000002584/1-1286 EGRFHFAIDR GGTFTDVFAQ CPGGHVRVLK LLSEDPANYV DAPTEGIRRI ENSP00000475943/1-1288 EGRFHFAIDR GGTFTDVFAQ CPGGHVRVLK LLSEDPANYA DAPTEGIRRI BACU001466/1-1333 EGRFHFAIDR GGTFTDVFAQ CPGGHVRVLK LLSEDPANYV DAPTEGIRRI bmy_07582T0/1-1311 EGRFHFAIDR GGTFTDVFAQ CPGGHVRVLK LLSEDPANYV DAPTEGIRRI ENSBTAP00000022981/1-1288 EGRFHFAIDR GGTFTDVFAQ CPGGHVRVLK LLSEDPANYV DAPTEGIRRI 151 200 ENSTTRP00000002584/1-1286 LEQEGGMPLP RDRPLDTSRI ASIRMGTTVA TNALLERRGE RVALLVTRGF ENSP00000475943/1-1288 LEQEAGMLLP RDQPLDSSHI ASIRMGTTVA TNALLERKGE RVALLVTRGF BACU001466/1-1333 LEQEGGMLLP RDRPLDTSRI ASIRMGTTVA TNALLERHGE RVALLVTRGF bmy_07582T0/1-1311 LEQEGGMLLP RDRPLDTSRI ASIRMGTTVA TNALLERRGE RVALLVTRGF ENSBTAP00000022981/1-1288 LEQEGGVLLP RDRPLDTSRI ASIRMGTTVA TNALLERQGE RVALLVTRGF 201 250 ENSTTRP00000002584/1-1286 RDLLHVGTQA REDLFDLAVP MPEMLYEEVL EVDERVVLYR EEPGAGMPXX ENSP00000475943/1-1288 RDLLHIGTQA RGDLFDLAVP MPEVLYEEVL EVDERVVLHR GEAGTGTPVK BACU001466/1-1333 RDLLHVGTQA REDLFDLAVP MPEMLYEEVL EVDERVVLYR GEPGAGTPVK bmy_07582T0/1-1311 RDLLHVGTQA REDLFDLAVP MPEMLYEEVL EVDERVVLYR GEPGAGTPVK ENSBTAP00000022981/1-1288 RDLLHVGTQA RADLFDLAVP MPETLYEEVL EVDERVVLYR GEPGAGTPVK 251 300 ENSTTRP00000002584/1-1286 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXWAQHEQQV ENSP00000475943/1-1288 GRTGDLLEVQ QPVDLGALRG KLEGLLSRGI RSLAVVLMHS YTWAQHEQQV BACU001466/1-1333 GRTGDLLEVQ QPVDLGGLRG KLEGLLSRGI RSLAVVLMHS YTWAQHEQQV bmy_07582T0/1-1311 GCTGDLLEVQ QPVDLGGLRG KLEGLLSRGI RSLAVVLMHS YTWAQHEQQV ENSBTAP00000022981/1-1288 GCTGDLLEVQ QPVDLGGLRG KLEGLLSRGI RSLAVVLMHS YTWAQHEQQV 301 350 ENSTTRP00000002584/1-1286 GALARELGFT HVSLSSEAMP MVRIVPRGHT ACADAYLTPT IQRYVQGFRR ENSP00000475943/1-1288 GVLARELGFT HVSLSSEAMP MVRIVPRGHT ACADAYLTPA IQRYVQGFCR BACU001466/1-1333 GALARELGFT HVSLSSEAMP MVRIVPRGHT ACADAYLTPT LQRYVQGFRR bmy_07582T0/1-1311 GALARELGFT HVSLSSEATP M--------- ---------- ----VQGFRR ENSBTAP00000022981/1-1288 GALARELGFT HVSLSSEAMP MVRIVPRGHT ACADAYLTPT IQRYVQGFRR 351 400 ENSTTRP00000002584/1-1286 GFQGQLKDVQ VLFMRSDGGL APMDSFSGSR AVLSGPAGGV VGYSATTYRV ENSP00000475943/1-1288 GFQGQLKDVQ VLFMRSDGGL APMDTFSGSS AVLSGPAGGV VGYSATTYQQ BACU001466/1-1333 GFQGQLKDVQ VLFMRSDGGL APVDSFSGSR AVLSGPAGGV VGYSATTYRV bmy_07582T0/1-1311 GFQGQLKDVQ VLFMRSDGGL APVDSFSGSR AVLSGPAGGV VGYSATTYRV ENSBTAP00000022981/1-1288 GFQGQLKDVQ VLFMRSDGGL APMDSFSGSR AVLSGPAGGV VGYSATTYRV 401 450 ENSTTRP00000002584/1-1286 EGGHPVIGFD MGGTSTDVSR YAGEFEHVFE ASTAGVTLQA PQLDINTVAA ENSP00000475943/1-1288 EGGQPVIGFD MGGTSTDVSR YAGEFEHVFE ASTAGVTLQA PQLDINTVAA BACU001466/1-1333 EGGHPVIGFD MGGTSTDVSR YAGEFEHVFE ASTAGVTLQA PQLDINTVAA bmy_07582T0/1-1311 EGGHPVIGFD MGGTSTDVSR YAGEFEHVFE ASTAGVTLQA PQLDINTVAA ENSBTAP00000022981/1-1288 EGGQPVIGFD MGGTSTDVSR YAGEFEHVFE ASTAGVTLQA PQLDINTVAA 451 500 ENSTTRP00000002584/1-1286 GGGSRLFFRS GLFVVGPESA GAHPGPACYR KGGPVTVTDA NLVLGRLLPA ENSP00000475943/1-1288 GGGSRLFFRS GLFVVGPESA GAHPGPACYR KGGPVTVTDA NLVLGRLLPA BACU001466/1-1333 GGGSRLFFRS GLFVVGPESA GAHPGPACYR KGGPVTVTDA NLVLGRLLPA bmy_07582T0/1-1311 GGGSRLFFRS GLFVVGPESA GAHPGPACYR KGGPVTVTDA NLVLGRLLPA ENSBTAP00000022981/1-1288 GGGSRLFFRS GLFVVGPESA GAHPGPACYR KGGPVTVTDA NLVLGRLLPA 501 550 ENSTTRP00000002584/1-1286 SFPRIFGPGE DQPLSPEASR KALEAVATEV NSFLTNGPCP ASPLSLEEVA ENSP00000475943/1-1288 SFPCIFGPGE NQPLSPEASR KALEAVATEV NSFLTNGPCP ASPLSLEEVA BACU001466/1-1333 SFPRIFGPGE DQPLSLEASR KALEAVATEV NSFLTNGPCL ASPLSLEEVA bmy_07582T0/1-1311 SFPRIFGPGE DQPLSLEASR KALEAVATEV NSFLTNGPCP ASPLSLEEVA ENSBTAP00000022981/1-1288 SFPCIFGPGE DQPLSPEASR KALEAVATEV NSFLTNGPCP ASPLSLEEVA 551 600 ENSTTRP00000002584/1-1286 MGFVRVANEA MCRPIRALTQ ARGHDPSAHV LACFGGAGGQ HACAIARALG ENSP00000475943/1-1288 MGFVRVANEA MCRPIRALTQ ARGHDPSAHV LACFGGAGGQ HACAIARALG BACU001466/1-1333 MGFVRVANEA MCRPIRALTQ ARGHDPSAHV LACFGGAGGQ HACAIARALG bmy_07582T0/1-1311 MGFVRVANEA MCRPIRALTQ ARGHDPSAHV LACFGGAGGQ HACAIARALG ENSBTAP00000022981/1-1288 MGFVRVANEA MCRPIRALTQ ARGHDPSAHV LACFGGAGGQ HACAIARALG 601 650 ENSTTRP00000002584/1-1286 MDTVHIHRHS GLLSALGLAL ADVVHEAQEP CSLPYAPETF VQLDQRLSRL ENSP00000475943/1-1288 MDTVHIHRHS GLLSALGLAL ADVVHEAQEP CSLLYAPETF VQLDQRLSRL BACU001466/1-1333 MDTVHIHRHS GLLSALGLAL ADVVHEAQEP CSLPYAPETF VQLDQRLSRL bmy_07582T0/1-1311 MDTVHIHRHS GLLSALGLAL ADVVHEAQEP CSLPYAPETF VQLDQRLSRL ENSBTAP00000022981/1-1288 MDTVHIHRHS GLLSALGLAL ADVVHEAQEP CSLPYAPETF AQLDQRLGRL 651 700 ENSTTRP00000002584/1-1286 EEQCVDALRA QGFPRAQIST ESFLHLRYQG TDCALMVSAH QHPATAHSPR ENSP00000475943/1-1288 EEQCVDALQA QGFPRSQIST ESFLHLRYQG TDCALMVSAH QHPATARSPR BACU001466/1-1333 EEQCVDALRA QGFPRAQIST ESFLHLRYQG TDCALMVSAH QHPATACSPI bmy_07582T0/1-1311 EEQCVDALRA QGFPRAQIST ESFLHLRYQG TDCALMVSAH QHPATARSPR ENSBTAP00000022981/1-1288 EEQCVEALRA QGFPRSQIST ESFLHLRYQG TDCALMVSAH QHPASARSPR 701 750 ENSTTRP00000002584/1-1286 AGDFGAGFVE RYMREFGFII PERPVVVDDV RVRGTGRSGL CLEYVPKAQS ENSP00000475943/1-1288 AGDFGAAFVE RYMREFGFVI PERPVVVDDV RVRGTGRSGL RLEDAPKAQT BACU001466/1-1333 AGDFGAGFVE RYMREFGFTI PERPVVVDDV RVRGTGHSGL RLEFVPKAQS bmy_07582T0/1-1311 AGDFGAGFVE RYMREFGFII PERPVVVDDV RVRGTGHSGL RLEFVPKAQS ENSBTAP00000022981/1-1288 AGDFGAAFVE RYMREFGFII PERPVVVDDV RVRGTGSSSL RLEDVPKAHS 751 800 ENSTTRP00000002584/1-1286 GPPRVDKMTR CYFEGGYQET PVYLLGELGA GHKLQGPCLL IDSNSTILVE ENSP00000475943/1-1288 GPPRVDKMTQ CYFEGGYQET PVYLLAELGY GHKLHGPCLI IDSNSTILVE BACU001466/1-1333 GPPRVDKMTR CYFEGGYQET PVYLLGELGD GHKLQGPCLI IDSNSTILVE bmy_07582T0/1-1311 GPPRVDKMTR CYFEGGYQET PVYLLGELGD GHKLQGPCLI IDSNSTILVE ENSBTAP00000022981/1-1288 GPPRVDKMTQ CYFEGGYQET PVYLLGELGC GHKLQGPCLI IDSNSTILVE 801 850 ENSTTRP00000002584/1-1286 PACQAEVTET GDIRISVGAE APGTVGAQLD PIHLSIFSHR FMSIAEQMGR ENSP00000475943/1-1288 PGCQAEVTKT GDICISVGAE VPGTVGPQLD PIQLSIFSHR FMSIAEQMGR BACU001466/1-1333 PGCQAEVTET GDIRISVGAE VPSTVGAQLD PIHLSIFSHR FMSIAEQMGR bmy_07582T0/1-1311 PGCQAEVTET GDIRISVGAE APSTVGAQLD PIHLSIFSHR FMSIAEQMGR ENSBTAP00000022981/1-1288 PGCQAEVTET GDIRISVGAE TASVVGTQLD PIHLSIFSHR FMSIAEQMGR 851 900 ENSTTRP00000002584/1-1286 ILQRTAISTN IKERLDFSCA LFGPDGGLVS NAPHIPVHLG AMQETVQFQI ENSP00000475943/1-1288 ILQRTAISTN IKERLDFSCA LFGPDGGLVS NAPHIPVHLG AMQETVQFQI BACU001466/1-1333 ILQRTAISTN IKERLDFSCA LFGPDGGLVS NAPHIPVHLG AMQETVQFQI bmy_07582T0/1-1311 ILQRTAISTN IKERLDFSCA LFGPDGGLVS NAPHIPVHLG AMQETVQFQI ENSBTAP00000022981/1-1288 ILQRTAISTN IKERLDFSCA LFGPDGGLVS NAPHIPVHLG AMQETVQFQI 901 950 ENSTTRP00000002584/1-1286 QHVGADLHPG DVLLSNHPCA GGSHLPDLTV ITPVFWPGQT RPVFYVASRG ENSP00000475943/1-1288 QHLGADLHPG DVLLSNHPSA GGSHLPDLTV ITPVFWPGQT RPVFYVASRG BACU001466/1-1333 QHLGADLRPG DVLLSNHPGA GGSHLPDLTV ITPVFWPGQT RPVFYVASRG bmy_07582T0/1-1311 QHLGADLHPG DVLLSNHPSA GGSHLPDLTV ITP------T RPVFYVASRG ENSBTAP00000022981/1-1288 QQLGADLHPG DVLLSNHPSA GGSHLPDLTV ITPVFWPGQT RPVFYVASRG 951 1000 ENSTTRP00000002584/1-1286 HHADIGGITP GSMPPHSTTL QQEGAIFLSF RLVQAGVFQE EAVTEALRAP ENSP00000475943/1-1288 HHADIGGITP GSMPPHSTML QQEGAVFLSF KLVQGGVFQE EAVTEALRAP BACU001466/1-1333 HHADIGGITP GSMPPHSTTL QQEGAVFLSF RLVQAGVFQE EAVTEALRAP bmy_07582T0/1-1311 HHADIGGITP GSMPPHSTTL QQEGAVFLSF RLVQAGVFQE EAVTEALRAP ENSBTAP00000022981/1-1288 HHADIGGITP GSMPPHSTSL QQEGAVFLSF KLVHGGVFQE EAVTEALRAP 1001 1050 ENSTTRP00000002584/1-1286 GNIPGCSGTR NLHDNLSDLR AQVAANQKGI QLVGELIGQY GLDVVQAYMG ENSP00000475943/1-1288 GKVPNCSGTR NLHDNLSDLR AQVAANQKGI QLVGELIGQY GLDVVQAYMG BACU001466/1-1333 GKIPGCSGTR NLHDNLSDLR AQVAANQKGI QLVGELIGQY GLDVVQAYMG bmy_07582T0/1-1311 GKIPGCSGTR NLHDNLSDLR AQVAANQKGI QLVGELIGQY GLDVVQAYMG ENSBTAP00000022981/1-1288 GKIPGCSGTR NLHDNLSDLR AQVAANQKGI QLVGELIGQY GLDVVQAYMG 1051 1100 ENSTTRP00000002584/1-1286 HIQANAELAV RDMLRAFGTS RQAQGLPLEV SAEDHMDDGS PIRLRVQIDV ENSP00000475943/1-1288 HIQANAELAV RDMLRAFGTS RQARGLPLEV SSEDHMDDGS PIRLRVQISL BACU001466/1-1333 HIQANAELAV RDMLRAFGTS RQARGLPLEV SAEDHMDDGS PIRLRVQINL bmy_07582T0/1-1311 HIQANAELAV RDMLRAFGTS RQARGLPLEV SAEDHMDDGS PIRLRVQINL ENSBTAP00000022981/1-1288 HIQANAELAV RDMLRAFGTA RQARGLPLEV SAEDHMDDGS PIRLRVQINM 1101 1150 ENSTTRP00000002584/1-1286 SEGSAVFDFS GTGPEVFGNL NAPRAITLSA LIYCLRCLVG RDIPLNQGCL ENSP00000475943/1-1288 SQGSAVFDFS GTGPEVFGNL NAPRAVTLSA LIYCLRCLVG RDIPLNQGCL BACU001466/1-1333 SQGSAVFDFS GTGPEVFGNL NAPRAITLSA LIYCLRCLVG CDIPLNQGCL bmy_07582T0/1-1311 SQGSAVFDFS GTGPEVFGNL NAPRAITLSA LIYCLRCLVG RDIPLNQGCL ENSBTAP00000022981/1-1288 SQGSAVFDFS GSGPEVFGNL NAPRAITLSA LIYCLRCLVG RDIPLNQGCL 1151 1200 ENSTTRP00000002584/1-1286 APVHVVIPKG SILDPSPEAA VVGGNVLTSQ RVVDVILGAF GACAASQGCM ENSP00000475943/1-1288 APVRVVIPRG SILDPSPEAA VVGGNVLTSQ RVVDVILGAF GACAASQGCM BACU001466/1-1333 APVRVVIPKG SILDPSPEAA VVGGNVLTSQ RVVDVILGAF GACAASQ--- bmy_07582T0/1-1311 APVRVVIPKG SILDPSPEAA VVGGNVLTSQ RVVDVILGAF GACAASQGCM ENSBTAP00000022981/1-1288 APVRVVIPKG SILDPSPDAA VVGGNVLTSQ RVVDVILGAF GACAASQGCM 1201 1250 ENSTTRP00000002584/1-1286 NNVTLGNAHL GYYETVAGGA GAGPGWHGRS GVHSHMTNTR ITDPEILESR ENSP00000475943/1-1288 NNVTLGNAHM GYYETVAGGA GAGPSWHGRS GVHSHMTNTR ITDPEILESR BACU001466/1-1333 ---------- ---------- ----VW---- ---------- ---------- bmy_07582T0/1-1311 NNVTLGNAHM GYYETVAGGA GAGPGWHGRS GVHSHMTNTR ITDPEILESR ENSBTAP00000022981/1-1288 NNVTLGNAHM GYYETVAGGA GAGPGWHGRS GVHSHMTNTR ITDPEILESR 1251 1300 ENSTTRP00000002584/1-1286 YPVILRRFEL RLGGG--GRF RGGDGVIREL LFREEALLSV LTERRAFQPY ENSP00000475943/1-1288 YPVILRRFEL RRGSGGRGRF RGGDGVTREL LFREEALLSV LTERRAFRPY BACU001466/1-1333 YPVILRRFEL RLGSGGRGRF RGGDGVIREL LFREEALLSV LTERRAFQPY bmy_07582T0/1-1311 YPVILRRFEL RLGSGGRGRF RGGDGVIREL LFREETLLSV LTERRAFQPY ENSBTAP00000022981/1-1288 YPVILRRFEL RLGSGGRGRF RGGDGIIREL LFREEALLSV LTERRAFQPY 1301 1350 ENSTTRP00000002584/1-1286 GLMGGEPGTR GLNLLIRKGG RTVNLGGKTS VLVSPGDVFC LHTPGGGGYG ENSP00000475943/1-1288 GLHGGEPGAR GLNLLIRKNG RTVNLGGKTS VTVYPGDVFC LHTPGGGGYG BACU001466/1-1333 GLMGGEPGTR GLNLLIRKDG RTVNLGGKTS VPVCPGDVFC LHTPGGGGYG bmy_07582T0/1-1311 GLMGGEPGTR GLNLLIRKDG RTVNLGGKTS VPVCPGDVFC LHTPGGGGYG ENSBTAP00000022981/1-1288 GLMGGEPGAR GLNLLIRKDG RTVNLGGKTS VPVYPGDVFC LHTPGGGGYG 1351 1400 ENSTTRP00000002584/1-1286 DPEDPAPLPA SLLQPLAFPE RGSVYEYRRA QETV ENSP00000475943/1-1288 DPEDPAPPPG SPPQALAFPE HGSVYEYRRA QEAV BACU001466/1-1333 DPEDPAPLLA SLLQPKAFPE RGSVYEYRRA QETV bmy_07582T0/1-1311 DPEDPAPLPA SLLQPKAFSE RGSVYEYRRA QETV ENSBTAP00000022981/1-1288 DPEDPAPLPG SPLQPLAFPE RGSVYEYRRA QEAV