KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:36 2014 Check: 00 .. Name: ENSTTRP00000006114/1-634 Len: 706 Check: 9069 Weight: 1.00 Name: BACU019176/1-591 Len: 706 Check: 5452 Weight: 1.00 Name: ENSBTAP00000023001/1-623 Len: 706 Check: 2726 Weight: 1.00 Name: bmy_05898T0/1-662 Len: 706 Check: 7802 Weight: 1.00 Name: ENSP00000414982/1-618 Len: 706 Check: 3030 Weight: 1.00 // 1 50 ENSTTRP00000006114/1-634 --------MS TMVYIKEDKL EKLTQDEIIS KTKQVIQGLE ALKNEHNSIF BACU019176/1-591 --------MS TMVYIKEDKL EKLTQDEIIS KTKQVIQGLE ALKNEHNSIL ENSBTAP00000023001/1-623 ----MYDNMS TMVYMKEDKL EKLTQDEIIS KTKQVIQGLE ALKNEHNSIL bmy_05898T0/1-662 MLPPMYDNMS TMVYIKEDKL EKLTQDEIIS KTKQVIQGLE ALKNEHNSIL ENSP00000414982/1-618 ----MYDNMS TMVYIKEDKL EKLTQDEIIS KTKQVIQGLE ALKNEHNSIL 51 100 ENSTTRP00000006114/1-634 QSLLEPLKCL KKDDESNLVE EKSTMIRKSL EMLELALSEA QVMMALSNHL BACU019176/1-591 QSLLETLKCL KKDDESNLVE EKSNMIRKSL EMLELGLSEA QVMMALSNHL ENSBTAP00000023001/1-623 QSLLETLKCL KKDDESNLVE EKSNMIRKSL EMLELGLSEA QVMMALSNHL bmy_05898T0/1-662 QSLLETLKCL KKDDESNLVE EKSNMIRKSL EMLELGLSEA QVMMALSNHL ENSP00000414982/1-618 QSLLETLKCL KKDDESNLVE EKSNMIRKSL EMLELGLSEA QVMMALSNHL 101 150 ENSTTRP00000006114/1-634 NAVESEKQKL RAQVRRLCQE NQWLRDELAN TQQKLQKSEQ SVAQLEEEKK BACU019176/1-591 NAVESEKQKL RAQVRRLCQE NQWLRDELAN TQQKLQKSEQ SVAQLEEEKK ENSBTAP00000023001/1-623 NAVESEKQKL RAQVRRLCQE NQWLRDELAN TQQKLQKSEQ SVAQLEEEKK bmy_05898T0/1-662 NAVESEKQKL RAQVRRLCQE NQWLRDELAN TQQKLQKSEQ SVAQLEEEKK ENSP00000414982/1-618 NAVESEKQKL RAQVRRLCQE NQWLRDELAN TQQKLQKSEQ SVAQLEEEKK 151 200 ENSTTRP00000006114/1-634 HLEFMNQLKK YDDDISPSED KDTDSTKEPL DDLFPNDDDD PGQGMQQQQS BACU019176/1-591 HLEFMNQLKK YDDDISPSED KDTDSTKEPL DDLFPNDDDD PGQGMQQQQS ENSBTAP00000023001/1-623 HLEFMNQLKK YDDDISPSED KDADSTKEPL DDLFPNDDDD PGQGIQQQHS bmy_05898T0/1-662 HLEFMNQLKK YDDDISPSED KDTDSTKEPL DDLFPNDDDD PGQGMQQQQS ENSP00000414982/1-618 HLEFMNQLKK YDDDISPSED KDTDSTKEPL DDLFPNDEDD PGQGIQQQHS 201 250 ENSTTRP00000006114/1-634 SAAAAAQQGG YEIPARLRTL HNLVIQYASQ GRYEVAVPLC KQALEDLEKT BACU019176/1-591 SAAAGAQQGG YEIPARLRTL HNLVIQYASQ GRYEVAVPLC KQALEDLEKT ENSBTAP00000023001/1-623 SAAAAAQQGG YEIPARLRTL HNLVIQYASQ GRYEVAVPLC KQALEDLEKT bmy_05898T0/1-662 SAAAAAQQGG YEIPARLRTL HNLVIQYASQ GRYEVAVPLC KQALEDLEKT ENSP00000414982/1-618 SAAAAAQQGG YEIPARLRTL HNLVIQYASQ GRYEVAVPLC KQALEDLEKT 251 300 ENSTTRP00000006114/1-634 SGHDHPDVAT MLNILALVYX ---------- -----XXXXX XXXXXXXXXX BACU019176/1-591 SGHDHPDVAT MLNILALVYR AGTAL----- ---------- -GIASHKQPA ENSBTAP00000023001/1-623 SGHDHPDVAT MLNILALVYR ---------- -----DQNKY KDAANLLNDA bmy_05898T0/1-662 SGHDHPDVAT MLNILALVYR LGKALLGSRS YSVGKDQNKY KDAANLLNDA ENSP00000414982/1-618 SGHDHPDVAT MLNILALVYR ---------- -----DQNKY KDAANLLNDA 301 350 ENSTTRP00000006114/1-634 XXXXXXXXXX XXXX------ ---------- ---------- ---------- BACU019176/1-591 LELSLKNRGQ SFPG------ ---------- ---------- ---------- ENSBTAP00000023001/1-623 LAIREKTLGK DHPA------ ---------- ---------- ---------- bmy_05898T0/1-662 LAIREKTLGK DHPAGRFKSC LCTGRHSVTL CSLSVDSETA LPPLSGVLFL ENSP00000414982/1-618 LAIREKTLGK DHPA------ ---------- ---------- ---------- 351 400 ENSTTRP00000006114/1-634 ---------- ---XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXVLG BACU019176/1-591 --RERCKFRY FKDWAATLNS L--------- YKTQFPRLQT VHSITYQVLG ENSBTAP00000023001/1-623 ---------- ---VAATLNN LAVLYGKRGK YKEAEPLCKR ALEIREKVLG bmy_05898T0/1-662 HPAESSSLHI LGVVAATLNN LAVLYGKRGK YKEAEPLCKR ALEIREKVLG ENSP00000414982/1-618 ---------- ---VAATLNN LAVLYGKRGK YKEAEPLCKR ALEIREKVLG 401 450 ENSTTRP00000006114/1-634 KDHPDVAKQL NNLALLCQNQ GKYEEVEYYY QRALEIYQTK LGPDDPNVAK BACU019176/1-591 KDHPDVAKQL NNLALLCQNQ GKYEEVEYYY QRALEIYQTK LGPDDPNVAK ENSBTAP00000023001/1-623 KDHPDVAKQL NNLALLCQNQ GKYEEVEYYY QRALEIYQTK LGPDDPNVAK bmy_05898T0/1-662 KDHPDVAKQL NNLALLCQNQ GKYEEVEYYY QRALEIYQTK LGPDDPNVAK ENSP00000414982/1-618 KDHPDVAKQL NNLALLCQNQ GKYEEVEYYY QRALEIYQTK LGPDDPNVAK 451 500 ENSTTRP00000006114/1-634 TKNNLASCYL KQGKFKQADX XXXXXXXXXX XXXXXXXXXX EKPIWMHAEE BACU019176/1-591 TKNNLASCYL KQGKFKQAET LYKEILTRAH EREFGSVDDE NKPIWMHAEE ENSBTAP00000023001/1-623 TKNNLASCYL KQGKFKQAET LYKEILTRAH EREFGSVDDE NKPIWMHAEE bmy_05898T0/1-662 TKNNLASCYL KQGKFKQAET LYKEILTRAH EREFGSVDDE NKPIWMHAEE ENSP00000414982/1-618 TKNNLASCYL KQGKFKQAET LYKEILTRAH EREFGSVDDE NKPIWMHAEE 501 550 ENSTTRP00000006114/1-634 REECKGKQKD GTSFGEYGGW YKACKVDSPT VTTTLKNLGA LYRRQGKFEA BACU019176/1-591 REECKGKQKD GTSFGEYGGW YKACKVDSPT VTTTLKNLGA LYRRQGKFEA ENSBTAP00000023001/1-623 REECKGKQKD GTSFGEYGGW YKACKVDSPT VTTTLKNLGA LYRRQGKFEA bmy_05898T0/1-662 REECKGKQKD GTSFGEYGGW YKACKVDSPT VTTTLKNLGA LYRRQGKFEA ENSP00000414982/1-618 REECKGKQKD GTSFGEYGGW YKACKVDSPT VTTTLKNLGA LYRRQGKFEA 551 600 ENSTTRP00000006114/1-634 AETLEEAAMR SRKQGLDNAH KQRVAEVLND PENMEKRRSR ESLSVDVVKY BACU019176/1-591 AETLEEAAMR SRKQGLDNAH KQRVAEVLND PENMEKRRSR ESLSADVVKY ENSBTAP00000023001/1-623 AETLEEAAMR SRKQGLDNVH KQRVAEVLND PENTEKRRSR ESLSVDVVKY bmy_05898T0/1-662 AETLEEAAMR SRKQGLDNAH KQRVAEVLND PENMEKRRSR ESLSADVVKY ENSP00000414982/1-618 AETLEEAAMR SRKQGLDNVH KQRVAEVLND PENMEKRRSR ESLNVDVVKY 601 650 ENSTTRP00000006114/1-634 ESGPDGGEEV SMSVEWNGDG TGSLKRSGSF SKLRASIRRS SEKLVRKLKG BACU019176/1-591 ESGPDGGEEV SMSVEWNGDG TGSLKRSGSF SKLRASIRRS SEKLVRKLKG ENSBTAP00000023001/1-623 ESGPDGGEEV SMSVEWNGDG TGSLKRSGSF SKLRASIRRS SEKLVRKLKG bmy_05898T0/1-662 ESGPDGGEEV SMSVEWNGDG TGSLKRSGSF SKLRASIRRS SEKLVRKLKG ENSP00000414982/1-618 ESGPDGGEEV SMSVEWNGDG TGSLKRSGSF SKLRASIRRS SEKLVRKLKG 651 700 ENSTTRP00000006114/1-634 GGSRDSEPKD PGMKRASSLT VLNVGGTAAA DHFQGVSSRA PLCGKQQQQR BACU019176/1-591 GGSRDSEPKD PG-------- ---------- ---------- ---------- ENSBTAP00000023001/1-623 GSARDSEPRN PGMKRASSLN VLNVGGKAAE DHFQARSPTP L--------- bmy_05898T0/1-662 GGSRDSEPKD PG-------- ---------- ---------- ---------- ENSP00000414982/1-618 GSSRESEPKN PGASLAEPLF VENDSSSSGL EDATAN---- ---------- 701 750 ENSTTRP00000006114/1-634 PGGRQP BACU019176/1-591 ------ ENSBTAP00000023001/1-623 ------ bmy_05898T0/1-662 ------ ENSP00000414982/1-618 ------