KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:37 2014 Check: 00 .. Name: ENSP00000382733/1-511 Len: 863 Check: 4260 Weight: 1.00 Name: ENSBTAP00000023021/1-410 Len: 863 Check: 7905 Weight: 1.00 Name: ENSTTRP00000008796/1-454 Len: 863 Check: 4552 Weight: 1.00 Name: bmy_08986T0/1-502 Len: 863 Check: 8170 Weight: 1.00 Name: BACU007542/1-857 Len: 863 Check: 8572 Weight: 1.00 // 1 50 ENSP00000382733/1-511 MLVDGPSERP ALCFLLL--A VAMSFFGSAL SIDETRAHLL LKEKMMRLGG ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---MSVSGRP ALPALLL--A VAMSSFCSAA SGDEARNRLL MREEMMRIGG bmy_08986T0/1-502 ---MSMSGXP ALPTLLLAVA VAVSSFCSAT SGDEARNRLL MREKMMRIGG BACU007542/1-857 ---MSASGRP ALPTLLL--A VAVSSFRSAT SGDEARNRLL MREKMMRIGG 51 100 ENSP00000382733/1-511 RLVLNTKEEL ANERLMTLKI AEMKEAMRTL IFPPSMHFFQ AKHLIERSQV ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 QLVLKQEEEL ANQRLGALKE AEMQEALRAG SIPASMHFFQ AKSFIEQSAV bmy_08986T0/1-502 QLVLKQEEEL ANQRLGALKE AEMQEALRTG SIPPSMHFFQ AKSLIE---- BACU007542/1-857 QLVLKQEEEL ANQRLGALKE AEMQEALRTG SIPPSMHFFQ AKSLIEKSAV 101 150 ENSP00000382733/1-511 FNILRMMPKG AALHLHDIGI VTMDWLVRNV TYRPHCHICF TPRGIMQFRF ENSBTAP00000023021/1-410 -------PSG AALHVHDFSI TSPDWLVKNA TYRPHCYFCF TRRGTPQFRF ENSTTRP00000008796/1-454 FHILKKMPKG AALHVHDFSI VSVDWLVRNV TYRPHCYFCL TPRGTPQFRF bmy_08986T0/1-502 --------KR AALHVHDFSI ASTDWLVRNV TYRPHCYFCL TPRGTPQFRF BACU007542/1-857 FNILKKMPKG AALHVHDFSI TNTDWLVRNV TYRPHCYFCL TPRGTPQFRF 151 200 ENSP00000382733/1-511 AH---PTPRP SEKCSKWILL EDYRKRVQNV TEFDD----- ---------- ENSBTAP00000023021/1-410 AHLTTPTPKP AE-CPQWVLL EKFRKGLRNV SEFDN----- ---------- ENSTTRP00000008796/1-454 ARSTPP---P TE-CPAWVLL EKFRKGLPNV TEFDH----- ---------- bmy_08986T0/1-502 ARSTPPTLNT TE-CPQWVLL EKFRKGLPNI TEFDH----- ---------- BACU007542/1-857 ARSTPPTLNT TE-CPQWVLL EKFRKGLPNI TEFDHRYSTP IPSAASSWSD 201 250 ENSP00000382733/1-511 ---------- ------SLLR NFTLVTQHPE VIYTNQNVVW SKFETIFFTI ENSBTAP00000023021/1-410 ---------- ------SLLR NLTLMTENPH VTYADQDAIW AKFETIFFVL ENSTTRP00000008796/1-454 ---------- ------SLLR NFTLVTENPQ ETYANQDAVW AKFETIFFAI bmy_08986T0/1-502 ---------- ------SLLR NFTLMTENPQ ATYANQDAVW AKFETIFFAI BACU007542/1-857 LTSDTAAAPN GTCLDPHLLR NFTLMTENPQ ATYANQDVVW AKFETIFFAI 251 300 ENSP00000382733/1-511 SGLIHYAPVF RDYVFRSMQE FYEDNVLYME IRARLLPVYE LSGEHHDEEW ENSBTAP00000023021/1-410 GGLVSYAPVF RDYLSQGLEE FYQDNVLYLE IRASLHPVYE LDGTIYSQEW ENSTTRP00000008796/1-454 AGLVSYAPVF RDYISQGLEE FYQDNVLYLE LRAMLYPVYE LNGTVYSPEW bmy_08986T0/1-502 AGLVSYAPVF RDYISQGLEE FYQDNVLYLE LRAMLYPVYE LNGTVYSPEW BACU007542/1-857 AGLVSYAPVF RDYISQGLEE FYQDNVLYLE LRAMLYPVYE LNGTVYSPEW 301 350 ENSP00000382733/1-511 SVKTYQEVAQ KFVETHPEFI GIKIIYSDHR SKDVAVIAES IRMAMGLRIK ENSBTAP00000023021/1-410 LVRTYEEVAH NFAKTHPGFI GIKLIFSDHR TKNESLIKKS IQTAMDLRVK ENSTTRP00000008796/1-454 SVRLYEEVAR NFAKEHPGFI GIKLIYSDHR SKDASTITKS IQTAMELRAK bmy_08986T0/1-502 SVRLYEEVAR NFAKEHPGFI GIKLIYSDHR SKGASAIAKS IQTAMELRAK BACU007542/1-857 SVRLYEEVAR NFAKEHPGFI GIKLIYSDHR SKDASAITKS IQTAMELRAK 351 400 ENSP00000382733/1-511 FPTVVAGFDL VGHEDTGHSL HDYKEALMIP AKDGVKLPYF FHAGETDWQG ENSBTAP00000023021/1-410 FPGIVAGFDL VGREDTGYTL YDYREALMIP ASRGVHLPYF FHAGETDWEG ENSTTRP00000008796/1-454 FPGMVAGFDL VGREDTGHSL YDYKEVLMIP ASRGIKLPYF FHAGETDWQG bmy_08986T0/1-502 FPGMVAGFDL VGREDTGHSL YDYKEVLMIP ASRGIKLPYF FHAGETDWQG BACU007542/1-857 FPGMVAGFDL VGREDTGHSL YDYKEVLMIP ASRGIKLPYF FHAGETDWQG 401 450 ENSP00000382733/1-511 TSIDRNILDA LMLNTTRIGH GFALSKHPAV RTYSWKKDIP IEVCPISNQV ENSBTAP00000023021/1-410 TSVDRNLLDA VILNSTRIGH GFALSKHPAV LAEAWKKDIP IEVCPISNQV ENSTTRP00000008796/1-454 TSADRNVLDA LILNATRIGH GFALSKHPAV WAEAWKKDIP VEVCPISNQV bmy_08986T0/1-502 TSADRNVLDA LLLNSTRIGH GFALSKHPAV WAEAWKKDIP IEVCPISNQV BACU007542/1-857 TSADRNVLDA LLLNSTRIGH GFALSKHPAV WAEAWKKDIP IEVCPISNQV 451 500 ENSP00000382733/1-511 LKLVSDLRNH PVATLMATGH PMVISSDDPA MFGAKGLSYD FYEVFMGIGG ENSBTAP00000023021/1-410 LKLVSDLRNH PAAVMMAAGY PMVISSDDPA AFGARGLSYD FYEAFMGIGG ENSTTRP00000008796/1-454 LKLVSDLRNH PAAVLMATGY PMVISSDDPA TFGAKGLSYD FYEA------ bmy_08986T0/1-502 LKLVSDLRNH PAAVLMATGY PMVISSDDPA TFGAKGLSYD FYEAFMGIGG BACU007542/1-857 LKLVSDLRNH PAAVLMATGY PMVISSDDPA TFGAKGLSYD FYEAFMGIGG 501 550 ENSP00000382733/1-511 MKADLRTLKQ LAMNSIKYST LLESEKNTFM EIWKKRWDKF IADVATK--- ENSBTAP00000023021/1-410 MSADLRTLKQ LAINSIRYST LSETKKKSAM ETWEERWQKF VAGLARGPR- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 MTADLRTLRQ LAMNSIRYSA LSETEKKFAM ATWEERWQKF VAELARGPK- BACU007542/1-857 MTADLRTLKQ LAMNSIRYST LSETEKKFAM ATWEERWQKF VVELARGPKW 551 600 ENSP00000382733/1-511 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 ---------- ---------- ---------- ---------- ---------- BACU007542/1-857 ICPIGNPKPS PCVRGPGRPE GGDEALPSPL PRLRGRSRLP SVQSPPTFGF 601 650 ENSP00000382733/1-511 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 ---------- ---------- ---------- ---------- ---------- BACU007542/1-857 LLDIDGVLVR GHQVIPAARE AFRRLVDPQG QLWVPVVFVT NVGNILQCSK 651 700 ENSP00000382733/1-511 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 ---------- ---------- ---------- ---------- ---------- BACU007542/1-857 AQELSALLGF QVEPDQVILS HSPMKLFSQH HDKRMLVSGQ GPLVENARAL 701 750 ENSP00000382733/1-511 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 ---------- ---------- ---------- ---------- ---------- BACU007542/1-857 GFKHVVTVDE LRAAFPVLDM VDLQRRPKTT PLPRNDFPAI EGVLLLGEPV 751 800 ENSP00000382733/1-511 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 ---------- ---------- ---------- ---------- ---------- BACU007542/1-857 RWETSLQLIM DILLSDGNPG TGLAMAPYPH LPVLASNTDL LWMAEAKMPR 801 850 ENSP00000382733/1-511 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023021/1-410 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008796/1-454 ---------- ---------- ---------- ---------- ---------- bmy_08986T0/1-502 ---------- ---------- ---------- ---------- ---------- BACU007542/1-857 FGHGTFLLCL EAIYRKVTGR ELCYTGLMGK PSLLTYQYAE GLLARQAARR 851 900 ENSP00000382733/1-511 ---------- --- ENSBTAP00000023021/1-410 ---------- --- ENSTTRP00000008796/1-454 ---------- --- bmy_08986T0/1-502 ---------- --- BACU007542/1-857 GWAAPIRSLY AVG