KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:38 2014 Check: 00 .. Name: ENSBTAP00000023036/1-480 Len: 569 Check: 1958 Weight: 1.00 Name: bmy_04113T0/1-496 Len: 569 Check: 6357 Weight: 1.00 Name: ENSP00000432412/1-550 Len: 569 Check: 6408 Weight: 1.00 Name: BACU018369/1-527 Len: 569 Check: 916 Weight: 1.00 Name: ENSTTRP00000000419/1-552 Len: 569 Check: 273 Weight: 1.00 // 1 50 ENSBTAP00000023036/1-480 -METDLNSQD RKDLDKFIKF FALKTVQVIV QARLGEKICT RSSSSPTGSD bmy_04113T0/1-496 -METDLNSQD RKDLDKFIKF FALKTVQVIV QARLGEKICT RSSSSPTGSD ENSP00000432412/1-550 -METDLNSQD RKDLDKFIKF FALKTVQVIV QARLGEKICT RSSSSPTGSD BACU018369/1-527 AMETDLNSQD RKDLDKFIKF FALKTVQVIV QARLGEKICT RSSSSPTGSD ENSTTRP00000000419/1-552 AMETDLNSQD RKDLDKFIKF FALKTVQVIV QARLGEKICT RSSSSPTGSD 51 100 ENSBTAP00000023036/1-480 W--FNLAIKD IPEVTHEAKK ALAGQLPAVG RSMCVEISLK TSEGDSMELE bmy_04113T0/1-496 W--FNLAIKD IPEVTHEAKK ALAGQLPAVG RSMCVEISLK TSEGDSMELE ENSP00000432412/1-550 W--FNLAIKD IPEVTHEAKK ALAGQLPAVG RSMCVEISLK TSEGDSMELE BACU018369/1-527 WVKFQFFAKG YTMVFVTRNH GVVINNAIST SSLTTLCFYN VPY--SMELE ENSTTRP00000000419/1-552 W--XXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGDSMELE 101 150 ENSBTAP00000023036/1-480 IWCLEMNEKC DKEIKVSYAV YNRLSLLLKS LLAITRVTPA YRLSRKQGHE bmy_04113T0/1-496 IWCLEMNEKC DKEIKVSYAV YNRLSLLLKS LLAITRVTPA YRLSRKQGHE ENSP00000432412/1-550 IWCLEMNEKC DKEIKVSYTV YNRLSLLLKS LLAITRVTPA YRLSRKQGHE BACU018369/1-527 IWCLEMNEKC DKEIKVSYAV YNRLSLLLKS LLAITRVTPA YRLSRKQGHE ENSTTRP00000000419/1-552 IWCLEMNEKC DKEIKVSYAV YNRLSLLLKS LLAITRVTPA YRLSRKQGHE 151 200 ENSBTAP00000023036/1-480 YVILYRIYFG DVQLNGLGEG FQTVRVGTVG TPVGTITLSC AYRINLAFMS bmy_04113T0/1-496 YVILYRIYFG EVQLNGLGEG FQTVRVGTVG TPVGTITLSC AYRINLAFMS ENSP00000432412/1-550 YVILYRIYFG EVQLSGLGEG FQTVRVGTVG TPVGTITLSC AYRINLAFMS BACU018369/1-527 YVILYRIYFG EVQLNGLGEG FQTVRVGTVG TPVGTITLSC AYRINLAFMS ENSTTRP00000000419/1-552 YVILYRIYFG EVQLNGLGEG FQTVRVGTVG TPVGTITLSC AYRINLAFMS 201 250 ENSBTAP00000023036/1-480 TRHFERTPPI MGIIIDHFVD RPYPSSSPMH PCNYRTAGED TGVACPSVED bmy_04113T0/1-496 T--------- ---------- ---------- ----RTAGED TGVTYPSVED ENSP00000432412/1-550 TRQFERTPPI MGIIIDHFVD RPYPSSSPMH PCNYRTAGED TGVIYPSVED BACU018369/1-527 TRHFERTPPI MGIIIDHFVD RPYPSSSPMH PCNYRTAGED TGVTYPSVED ENSTTRP00000000419/1-552 TRHFERTPPI MGIIIDHFVD RPYPSSSPMH PCNYRTAGED TGVTYPSVED 251 300 ENSBTAP00000023036/1-480 SQEVCATSFS TSPPS----- ---------- ---------- ---------- bmy_04113T0/1-496 SQEVCTTSFS TSPPSQCVFT VTKAHFQTPT PVVTDTLRVP MAGLAFSH-- ENSP00000432412/1-550 SQEVCTTSFS TSPPSQCVFT VTKAHFQTPT PVVTDTLRVP MAGLAFSHQL BACU018369/1-527 SQEVCTTSFS TSPPSQCVFT VTKAHFQTPT PVVTDTLRVP MAGLAFSHQL ENSTTRP00000000419/1-552 SQEVCTTSFS TSPPSQCVFT VTKAHFQTPT PVVTDTLRVP MAGLAFSHQL 301 350 ENSBTAP00000023036/1-480 ---------- ---------- ---------- -----QLMVP GKEGGVPLGP bmy_04113T0/1-496 ---------- ---------- ---------- -----QLMVP GKEGGVPLAP ENSP00000432412/1-550 SSSRLSYQPA ALGVGSADLA YPVVFAAGLN ATHPHQLMVP GKEGGVPLAP BACU018369/1-527 SSSRLSCQPA ALGVGSADLA CPAVFAAGLN TTHPYQLMVP GKEGGVPLAP ENSTTRP00000000419/1-552 SSSRLSCQPA ALGVGSADLG CPAVFAAGLN TTHPYQLMVP GKEGGVPLAP 351 400 ENSBTAP00000023036/1-480 SQPAHAAQA- DQERLATYTP SDGAHCAATP SSSEDAETVS NSSEGRASPH bmy_04113T0/1-496 NQPAHGAQAG DQERLATYTP SDGAHCAATP SSSEDTETVS NSSEGRASPH ENSP00000432412/1-550 NQPVHGTQA- DQERLATCTP SDRTHCAATP SSSEDTETVS NSSEGRASPH BACU018369/1-527 NQPAHGAQAG DQERLATYTP SDGAHCAATP SSSEDTETVS NSSEGRASPH ENSTTRP00000000419/1-552 NQPAHGAQAG DQERLTTYTP SDGAHCAATP SSSEDTETVS NSSEGRASPH 401 450 ENSBTAP00000023036/1-480 DVLETIFVRK VGAFVNKPIN QVTLTSLDIP FAMFAPKNLE LEDADPM--- bmy_04113T0/1-496 DVLETIFVRK VGAFVNKPIN QVTLTSLDIP FAMFAPKNLE LEDVDPMPVP ENSP00000432412/1-550 DVLETIFVRK VGAFVNKPIN QVTLTSLDIP FAMFAPKNLE LEDTDPM--- BACU018369/1-527 DVLETIFVRK VGAFVNKPIN QVTLTSLDIP FAMFAPKNLE LEDVDPM--- ENSTTRP00000000419/1-552 DVLETIFVRK VGAFVNKPIN QVTLTSLDIP FAMFAAKNLE LEDVDPM--- 451 500 ENSBTAP00000023036/1-480 ---------- --VNPPDSPE TTSPLQGSLH SDGSSGGSSG HTQDDFVMID bmy_04113T0/1-496 RTSPYLCLIL KQVNPPDSPE TTSPLQGSLH SDGSSGGSSG NTQDDFVMID ENSP00000432412/1-550 ---------- --VNPPDSPE TESPLQGSLH SDGSSGGSSG NTHDDFVMID BACU018369/1-527 ---------- --VNPPDSPE TTSPLQGSLH SDGSSGGSSG NTQDDFVMID ENSTTRP00000000419/1-552 ---------- --VNPPDSPE TTSPLQGSLH SDGSSGGSSG NTQDDFVMID 501 550 ENSBTAP00000023036/1-480 FKPAFSKDDI LPMDLGTFYR EFQNPPQLSS LSLDIGAQSM AEDLDSLPEK bmy_04113T0/1-496 FKPAFSKDDI LPMDLGTFYR EFQNPPQLSS LSIDIGAQSM AEDLDSLPEK ENSP00000432412/1-550 FKPAFSKDDI LPMDLGTFYR EFQNPPQLSS LSIDIGAQSM AEDLDSLPEK BACU018369/1-527 FKPAFSKDDI LPMDLGTFYR EFQNPPQLSS LSIDIGAQSM AEDL------ ENSTTRP00000000419/1-552 FKPAFSKDDI LPMDLGTFYR EFQNPPQLSS LSIDIGAQSM AEDLDSLPEK 551 600 ENSBTAP00000023036/1-480 LAAHEKNVRE FDAFVETLQ bmy_04113T0/1-496 LAVHEKNVRE FDAFVETLQ ENSP00000432412/1-550 LAVHEKNVRE FDAFVETLQ BACU018369/1-527 ---------- --------- ENSTTRP00000000419/1-552 LAVHEKNVRE FDAFVETLQ