KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:42 2014 Check: 00 .. Name: ENSBTAP00000023068/1-817 Len: 1222 Check: 6174 Weight: 1.00 Name: ENSP00000438527/1-810 Len: 1222 Check: 8565 Weight: 1.00 Name: ENSTTRP00000006164/1-810 Len: 1222 Check: 6850 Weight: 1.00 Name: bmy_11873T0/1-1128 Len: 1222 Check: 8218 Weight: 1.00 Name: BACU001093/1-819 Len: 1222 Check: 8735 Weight: 1.00 // 1 50 ENSBTAP00000023068/1-817 MPNQGED--- ---------- ---------- ---------- ---------- ENSP00000438527/1-810 MPNQGED--- ---------- ---------- ---------- ---------- ENSTTRP00000006164/1-810 MPNQGED--- ---------- ---------- ---------- ---------- bmy_11873T0/1-1128 MVAEGLDKEA KLPTKKKRKK GLRIKGKRRR KKLILAKKFS KDLRHLQARH BACU001093/1-819 MPNQGED--- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000023068/1-817 ---------- ---------- ---------- ---------- ---------- ENSP00000438527/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006164/1-810 ---------- ---------- ---------- ---------- ---------- bmy_11873T0/1-1128 SPHWTRANKF GVTSGEEDFT LDVPLSPSSA GSSGSFEYIP TDPLDNNGMG BACU001093/1-819 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000023068/1-817 ---------- ---------- ---------- ---------- ---------- ENSP00000438527/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006164/1-810 ---------- ---------- ---------- ---------- ---------- bmy_11873T0/1-1128 KKRDKSVSDA LRAERGRFLI KIANKDSGAV GNGLDEAETE RNDLLSDTLP BACU001093/1-819 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000023068/1-817 ---------- ---------- ---------- C--------- ---------- ENSP00000438527/1-810 ---------- ---------- ---------- C--------- ---------- ENSTTRP00000006164/1-810 ---------- ---------- ---------- C--------- ---------- bmy_11873T0/1-1128 GEKSTGSQDV TAEDLKQDTL MHAQEQETTY CENSTSSQIS QAIIQMIVED BACU001093/1-819 ---------- ---------- ---------- C--------- ---------- 201 250 ENSBTAP00000023068/1-817 -----YF--- ---------- ---------F FYSTCT---- ---------- ENSP00000438527/1-810 -----YF--- ---------- ---------F FYSTCT---- ---------- ENSTTRP00000006164/1-810 -----YF--- ---------- ---------F FYSTCT---- ---------- bmy_11873T0/1-1128 MHPYNYFSTP AFQRFMQIVA PDYRLPSETY FFTKAVPQLY DWTTPSSSNG BACU001093/1-819 -----YF--- ---------- ---------F FYSTCT---- ---------- 251 300 ENSBTAP00000023068/1-817 ---------- ---------- ---------- ---------- ---------- ENSP00000438527/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006164/1-810 ---------- ---------- ---------- ---------- ---------- bmy_11873T0/1-1128 RIPNFRKWAV LCVTGLAKDC LITNILQELN DQIGLWLSPN FLIPSFIVSD BACU001093/1-819 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000023068/1-817 ---------- ---------- ---------- ---------- ---------- ENSP00000438527/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006164/1-810 ---------- ---------- ---------- ---------- ---------- bmy_11873T0/1-1128 NSSNKLREDF QVRGADLETY KQMLAEEVCN YMESSSEVCH IATSEASGSS BACU001093/1-819 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000023068/1-817 ---------- ---------- ---------- ---------- ---------- ENSP00000438527/1-810 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006164/1-810 ---------- ---------- ---------- ---------- ---------- bmy_11873T0/1-1128 AIVGADSFTS SIREGTSSSG SVDSSAADNV AIGGKSFMFP SAMAVVDEYF BACU001093/1-819 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000023068/1-817 ---------- ---------K GDSCPFRHCE AALGNETVCT LWQEGRCFRQ ENSP00000438527/1-810 ---------- ---------K GDSCPFRHCE AAIGNETVCT LWQEGRCFRQ ENSTTRP00000006164/1-810 ---------- ---------K GDSCPFRHCE AALGNETVCT LWQEGRCFRQ bmy_11873T0/1-1128 NEKYSETSGG DDPLIYWQKK GDSCPFRHCE AALGNETVCT LWQEGRCFRQ BACU001093/1-819 ---------- ---------K GDSCPFRHCE AALGNETVCT LWQEGRCFRQ 451 500 ENSBTAP00000023068/1-817 VCRFRHMEID KKRSEIPCYW ENQPMGCQKL NCAFHHNRGR YVDGLFLPPS ENSP00000438527/1-810 VCRFRHMEID KKRSEIPCYW ENQPTGCQKL NCAFHHNRGR YVDGLFLPPS ENSTTRP00000006164/1-810 VCRFRHMEID KKRSEIPCYW ENQPVGCQKL NCAFHHNRGR FVDGLFLPPS bmy_11873T0/1-1128 VCRFRHMEID M--------- ---------- ---------- ----LY---- BACU001093/1-819 VCRFRHMEID KKRSEIPCYW ENQPVGCQKL NCAFHHNRGR FVDGLFLPPS 501 550 ENSBTAP00000023068/1-817 KTVLPTVPES PEEEVKASQL TVQQSKLSVQ SNPSPQLRSV MKVESSENVP ENSP00000438527/1-810 KTVLPTVPES PEEEVKASQL SVQQNKLSVQ SNPSPQLRSV MKVESSENVP ENSTTRP00000006164/1-810 KTVLPTVPES PEEEVKASQL TVQQSKLSVQ SNPSPQLRSI MKVESSENVP bmy_11873T0/1-1128 -AVLPTVPES PEEEVKAGQL TVQQNKLSVQ SNPSPQLRSV MKVESSENVP BACU001093/1-819 KTVLPTVPES PEEEVKAGQL TVQQNKLSVQ SNPSPQLRSV MKVESSENVP 551 600 ENSBTAP00000023068/1-817 SPTHPPVVIN AADDDEDDDD QFSEEGDETK TPTLQPTLEV HNGLRMTSAR ENSP00000438527/1-810 SPTHPPVVIN AADDDEDDDD QFSEEGDETK TPTLQPTPEV HNGLRVTSVR ENSTTRP00000006164/1-810 SPTHPPVVIN AADDDEDDDD QFSEEGDETK TPTLQPTPEV HNGLRVASAR bmy_11873T0/1-1128 SPTHPPVVIN AADDDEDDDD QFSEEGDETK TPTLQPTPEV HNGLRVASAR BACU001093/1-819 SPTHPPVVIN AADDDEDDDD QFSEEGDETK TPTLQPTPEV HNGLRVASAR 601 650 ENSBTAP00000023068/1-817 KPGVNLKQGR QEMRLSPFPY SHFTVGKQEQ KDCLACKGSS GASSLLLQSQ ENSP00000438527/1-810 KPAVNIKQG- ECLNFGIKTL EEIKSKKMKE KSKKQGEGSS GVSSLLLHPE ENSTTRP00000006164/1-810 KPGVNLKQG- ECLNFGIKTL EEIKSKKMKE KSKKQGEGSS GVSSLLLQPQ bmy_11873T0/1-1128 KPGVNLKQG- ECLNFGIKTL EEIKSKKMKE KSKKQGEGSS GVSSLLLQPQ BACU001093/1-819 KPGVNLKQG- ECLNFGIKTL EEIKSKKMKE KSKKQGEGSS GVSSLLLQPQ 651 700 ENSBTAP00000023068/1-817 PMPGPEKENV RTVVRTVTLS SKQGDEPLVR LSLTERLGKR KFSVGGDSDA ENSP00000438527/1-810 PVPGPEKENV RTVVRTVTLS TKQGEEPLVR LSLTERLGKR KFSAGGDSDP ENSTTRP00000006164/1-810 TIPGPEKENV RTVVRTVTLS NKQGEEPLVR LSLTERLGKH KFSGGCDSDP bmy_11873T0/1-1128 PIPGPEKENV RTVVRTVTLS NKQG------ ---------- -----GDSDP BACU001093/1-819 PIPGPEKENV RTVVRTVTLS NKQGEEPLVR LSLTERLGRR KFSGVGDSDP 701 750 ENSBTAP00000023068/1-817 PLKRSLAQRL GKKIEAPEAN TDKTPKKVQV SKSLKERLGM STGPNSEEA- ENSP00000438527/1-810 PLKRSLAQRL GKKVEAPETN IDKTPKKAQV SKSLKERLGM SADPDNEDA- ENSTTRP00000006164/1-810 PLKHSLAQRL GKKVEAPETD TDRTPKKVQV SKSLKERLGL SAGLNNEEA- bmy_11873T0/1-1128 PLKRSLAQRL GKKVEAPETN TDRTPKK--- ---------- ---------- BACU001093/1-819 PLKRSLAQRL GKKVEAPETN TDRTPKKVQV SKSLKERLGM SAGLNNEEAA 751 800 ENSBTAP00000023068/1-817 AEKVTKVGEI HVKTLEEILL ERANQKRGEL QTKLKTEGPS KVDDSTSGAR ENSP00000438527/1-810 TDKVNKVGEI HVKTLEEILL ERASQKRGEL QTKLKTEGPS KTDDSTSGAR ENSTTRP00000006164/1-810 AERVTKVGEI HVKTLEEILL ERASQKRGEL QTKLKTEGPS KVDDSTTGTR bmy_11873T0/1-1128 AERVTKVGEI HVKTLEEILL ERASQKRGEL QTKLKTEGPS KVDDSTTGTR BACU001093/1-819 AERVTKVGEI HVKTLEEILL ERASQKRGEL QTKLKTEGPS KVDDSTTGTR 801 850 ENSBTAP00000023068/1-817 TSSTIRIKTF SEVLAEKKHR QQEAERQKGK KDVSCVKPKT DNEMKKTVIL ENSP00000438527/1-810 SSSTIRIKTF SEVLAEKKHR QQEAERQKSK KDTTCIKLKI DSEIKKTVVL ENSTTRP00000006164/1-810 TSSTVRIKTF SEVLAEKKHR QQEAERQKSK KDVTSIKLKT DNEIKKTVVL bmy_11873T0/1-1128 TSSTIRIKTF SEVLAEKKHR QQEAERQKSR KDVTCIKLKT DNEIKKTVVL BACU001093/1-819 TSSTIRIKTF SEVLAEKKHR QQEAERQKSR KDVTCIKLKT DNEIKKTVIL 851 900 ENSBTAP00000023068/1-817 PPTVASRGQS EEPAGKAKSM QEVHIKTLEE IKLEKALRVQ QSSESSTSSQ ENSP00000438527/1-810 PPIVASRGQS EEPAGKTKSM QEVHIKTLEE IKLEKALRVQ QSSESSTSSP ENSTTRP00000006164/1-810 PPVVASRGQS EEPAGRAKSM QEVHIKTLEE IKLEKALRVQ QSSESRTSSQ bmy_11873T0/1-1128 PPVVASRGQS EEPAGRAKSM QEVHIKTLEE IKLEKALRMQ QSSESSTSSQ BACU001093/1-819 PPVVVSRGQS EEPAGRAKSM QEVHIKTLEE IKLEKALRMQ QSSESSTSSQ 901 950 ENSBTAP00000023068/1-817 PQPEAMPAAK RLLRITKKTG IKEEKKLQEE SDVASQSSVS RTEAKKASDE ENSP00000438527/1-810 SQHEATPGAR RLLRITKRTG MKEEKNLQEG NEVDSQSSI- RTEAKEASGE ENSTTRP00000006164/1-810 PQPEATPGAR RLLQITKRTG IKEERKLKEE SVVASQSSVT RTEAKETSDE bmy_11873T0/1-1128 PQPEATPGAR RLLQITKKTG IKEERKLKEE SVVASQSSVT RTEAKETSDE BACU001093/1-819 PQPEATPGAR RLLQITKKTG IKEERKLKEE SVVASQSSVT RTEAKETSDE 951 1000 ENSBTAP00000023068/1-817 TTTVGITKIQ DKRCKTVREK YVPKLPEKGT SQKEKSILTP LRGDLLSYST ENSP00000438527/1-810 TTGVDITKIQ VKRCETMREK HMQKQQE--- --REKSVLTP LRGDVASCNT ENSTTRP00000006164/1-810 TTAVDVTKIQ VKRCETVREK HVQKLLE--- --KQKSVLAR LRGDLDTCNT bmy_11873T0/1-1128 TTAVDITKIQ VKRCETVREK HVQKLSEKGT SQKEKSVLTL LRGDLDTCNT BACU001093/1-819 TTAVDITKIQ VKRCETVREK HVQKLSDKGT SQKEKSVLTL LRGDLDTCNT 1001 1050 ENSBTAP00000023068/1-817 ELAEKPVLTT MLGITRHLTK RLPSKSSQKA KVETSGIGDS ILNVKCATQP ENSP00000438527/1-810 QVAEKPVLTA VPGITRHLTK RLPTKSSQKV EVETSGIGDS LLNVKCAAQT ENSTTRP00000006164/1-810 QL-EKPVLAT VPDITRLLTK RPHSKISQKT EVETSGIGHS XXXXXXXXXX bmy_11873T0/1-1128 QLAEKPVLTT VPDITRLLTK RPPSKLPQKT EVETSGTGDS KLNVKA---- BACU001093/1-819 QLAEKPVLTT VPDITRLLTK RPPSKLPQKT EVETSGIGDL KLNVKGATQT 1051 1100 ENSBTAP00000023068/1-817 LEKRS--KAK PKVNVKPSVV KVVSSPKLAP KRKAVEVHPA VIAAVKPLNS ENSP00000438527/1-810 LEKRG--KAK PKVNVKPSVV KVVSSPKLAP KRKAVEMHAA VIAAVKPLSS ENSTTRP00000006164/1-810 XXXXX--XXK RKMNVKPSVA KVVSSHKVAQ KRRAVEPHSA VIASVKPLTS bmy_11873T0/1-1128 -------KPK PKVNVKPSVV KAVSSPRRAP KRKAVEVHSA VIAAVKPLTS BACU001093/1-819 LEKRGKAKPK PKVNVKPSVV KAVSSPRRAP KRKAVEVHSA VIAAVKPLSS 1101 1150 ENSBTAP00000023068/1-817 SSVLLESSAK KAAVAIVPLL SEDKSVTVPE TEKPRDSFVL PPAQSSSEPP ENSP00000438527/1-810 SSVLQEPPAK KAAVAVVPLV SEDKSVTVPE AENPRDSLVL PPTQSSSDSS ENSTTRP00000006164/1-810 SSVLQKSPVK KAAVAVVPLL SEDKSVTVPE TEKPRDSFVL PPTQSSSDPS bmy_11873T0/1-1128 SSVLQKSPAK KAAVAVVPLL SEDKSVTVPE TEKPRDSFVL PPTQSSSDPS BACU001093/1-819 SSVLQKSPAK KAAVAVVPLL SEDKSVTVPE TEKPRDSFVL PPTQSSSDPS 1151 1200 ENSBTAP00000023068/1-817 PPEVSGPSSS QMATKTRRLS SASTGKPPLS MEDDFEKLIW EISGGKLEAE ENSP00000438527/1-810 PPEVSGPSSS QMSMKTRRLS SASTGKPPLS VEDDFEKLIW EISGGKLEAE ENSTTRP00000006164/1-810 PPEVSGPSSS QVATKTRRLS SASTGKPLLS MEDDFEKLIW EISGGKLEAE bmy_11873T0/1-1128 PPEVSGPSSS QVAAKTRRLS SASTGKPLLS MEDDFEKLIW EISGGKLEAE BACU001093/1-819 PPEVSGPSSS QVAAKTRRLS SASTGKPLLS MEDDFEKLIW EISGGKLEAE 1201 1250 ENSBTAP00000023068/1-817 IDLDPGKDED DLLLELSEMI DS ENSP00000438527/1-810 IDLDPGKDED DLLLELSEMI DS ENSTTRP00000006164/1-810 IDLDPGKDED DLLLELSEMI DS bmy_11873T0/1-1128 IDLDPGKDED DLLLELSEMI DS BACU001093/1-819 IDLDPGKDED DLLLELSEMI DS