KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:43 2014 Check: 00 .. Name: BACU004620/1-524 Len: 945 Check: 6224 Weight: 1.00 Name: ENSP00000359594/1-919 Len: 945 Check: 2602 Weight: 1.00 Name: ENSTTRP00000010166/1-898 Len: 945 Check: 9380 Weight: 1.00 Name: ENSBTAP00000023081/1-933 Len: 945 Check: 7391 Weight: 1.00 Name: bmy_16487T0/1-907 Len: 945 Check: 7840 Weight: 1.00 // 1 50 BACU004620/1-524 ---------- ---------- ---MRLEEKC VKGIG----- ---------- ENSP00000359594/1-919 MGLFRGFVFL LVLCLLHQSN TSFIKLNNNG FEDIVIVIDP SVPEDEKIIE ENSTTRP00000010166/1-898 MGLFRSFVFF LALYLLQGSN TSLVRLDNNG YEGIIIAIDP AVPEDETLIQ ENSBTAP00000023081/1-933 MGLFRSFVFL LMLYLLQGSN TSLVRLNNNG YEGIIIAIDP AVPEDETLIE bmy_16487T0/1-907 MELLRRFVFL LALYLLQGSN TSLVRLDNNG YEGIIIAIDP AVPEDETLIE 51 100 BACU004620/1-524 ---------- ---FNGLGRE M--------- ----RALMGY RRANSNQ--- ENSP00000359594/1-919 QIEDMVTTAS TYLFEATEKR FFFKNVSILI PENWKENPQY KRPKHENHKH ENSTTRP00000010166/1-898 QIKDMVTAAS TYLFEATEKR FFFKNVSILI PENWKNIIQY KRPKHESYKH ENSBTAP00000023081/1-933 KIQNMVIDAS TYLFEATEKR FFFKNVSILI PENWKSITQY KRPKHESYKH bmy_16487T0/1-907 QIKDMVTAAS TYLFEATEKR FFFKNVSILI PENWKNKTQY KRPKHESYKH 101 150 BACU004620/1-524 --------SI GGK------- ---------- -------VVG RGKEE----- ENSP00000359594/1-919 ADVIVAPPTL PGRDEPYTKQ FTECGEKGEY IHFTPDLLLG KKQNEYGPPG ENSTTRP00000010166/1-898 ADVLVSPPTL PGRDEPYTKQ FTGCEEKGEY IHFTPDFVLG KKQNEFGPSG ENSBTAP00000023081/1-933 ADVRVAPPTL PGRDEPYTKQ FTACEEKGEY IHFTPDFVLG NKQNEFGPSG bmy_16487T0/1-907 ADVLVSPPTL PGRDEPYTKQ FTACEEKGEY IHFTLDFVLG KKQKEFGPSG 151 200 BACU004620/1-524 ------WAE- ---------- ---------- ---------- ---------- ENSP00000359594/1-919 KLFVHEWAHL RWGVFDEYNE DQPFYRAKSK KIEATRCSAG ISGRNRVYKC ENSTTRP00000010166/1-898 RLFVHEWAHH RWGVFDEYND DEPFYRANTK KIEATXXXXX XXXXXXXXXX ENSBTAP00000023081/1-933 RLLVHEWAHL RWGVFDEYND DEPFYRAKSR KIEATRCSTS ITGLNRVYMC bmy_16487T0/1-907 RLFVHEWAHL RWGVFDEYND DEPFYSAK-- ------CSRG ITGINRVYKC 201 250 BACU004620/1-524 ---------- ---------- ---------- ---------- ---------- ENSP00000359594/1-919 QGGSCLSRA- CRIDSTTKLY GKDCQFFPDK VQTEKASIMF MQSIDSVVEF ENSTTRP00000010166/1-898 XXXXXXXXX- XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000023081/1-933 EGGSCVTNRE CRIDSKTKLY EKNCQFFPDK DQTEKTSIMF MQGIDSVTEF bmy_16487T0/1-907 QGNSCVTSR- CKIDSKTKLY QKDCQFFPDK YQTEKTSIMF MQGIDSVAEF 251 300 BACU004620/1-524 ---------- ---------- ---------- ---------- ---------- ENSP00000359594/1-919 CNEKTHNQEA PSLQNIKCNF RSTWEVISNS EDFKNTIPMV TPPPPPVFSL ENSTTRP00000010166/1-898 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XPPPPPVFS- ENSBTAP00000023081/1-933 CNEKSHNQEA PTLQNKMCNY RSTWEVISNS EDFKNTTAML APPPPPVFSL bmy_16487T0/1-907 CNEKNHNREA PSLQNKMCNF RSTWEVISNS EDFRNTMVMV APPPPPVFSL 301 350 BACU004620/1-524 ---------- ---------G SNRLNRMNQA AKHFLLQTVE NGSWVGIVDF ENSP00000359594/1-919 LKISQRIVCL VLDKSGSMGG KDRLNRMNQA AKHFLLQTVE NGSWVGMVHF ENSTTRP00000010166/1-898 LKISER-VCL VLDKSGSMAD YDRLNRMNQA AKHFLLQTVE NGSWVGMVHF ENSBTAP00000023081/1-933 LKFSERIVCL VLDKSGSMAA SNRLNRMNQA AQHFLLQTVE NGSWVGMVHF bmy_16487T0/1-907 LKIRERIVCL VLDKSGSMGN FNRLNRMNQA AKHFLLQTVE NGSWVGMVHF 351 400 BACU004620/1-524 DSTSHVKRKL IQIISNKERR KLLESLPTEA SGGTSICSGT ESAFQVIREI ENSP00000359594/1-919 DSTATIVNKL IQIKSSDERN TLMAGLPTYP LGGTSICSGI KYAFQVIGEL ENSTTRP00000010166/1-898 DDTAYIKSNL IQIISSNERR QLLESL---A SGGTSICSGI KSGFQVIRKN ENSBTAP00000023081/1-933 DSSASIKSNL IQIISSSERR KLLESLPTAA SGGTSICSGI ESGFQAIRNA bmy_16487T0/1-907 ESTAYIKSNL IQIISSHERR KLLESLPTAA RGGTSICSGI KSGFQVIRNA 401 450 BACU004620/1-524 YPQIDGSEII LVAAGEDKNV RNCTDKVKQS EAIIHFIALG PHADQAVIEM ENSP00000359594/1-919 HSQLDGSEVL LLTDGEDNTA SSCIDEVKQS GAIVHFIALG RAADEAVIEM ENSTTRP00000010166/1-898 YSQIDGSEIV LLSDGEDSTA NTCIDEVKQS GAIIHFIALG PNADRAVIEM ENSBTAP00000023081/1-933 DFQIDGSEIV LLTDGEDSTA KSCIEKVKQS GAIIHFIALG PDAAQAVKEM bmy_16487T0/1-907 YSQIDGSEIV LLTDGEDSSA KTCIDEVKQS GAIIHFIALG PQADQAVIEM 451 500 BACU004620/1-524 SNVTASRYF- ---------- ---------- ---------- ---------- ENSP00000359594/1-919 SKITGGSHFY VSDEAQNNGL IDAFGALTSG NTDLSQKSLQ LESKGLTLNS ENSTTRP00000010166/1-898 SNVTGGKHLY ASDEAQNNG- IDAFAALASG NTDASQQSLQ LESKGLKLNS ENSBTAP00000023081/1-933 SIATGGKYIY ASDEGQNNGL IDAFAALASE NIDASQQSLQ LESKGLKLNS bmy_16487T0/1-907 SNVT------ --DEAQNNGL IDAFAALASG NTDASQQSLQ LESKGLKLNT 501 550 BACU004620/1-524 ---------- --SLGSQ--- ---WNIN--- ---------- -GKFYSGQRF ENSP00000359594/1-919 NAWMNDTVII DSTVGKDTFF LITWNSLPPS ISLWDPSGTI MENFTVDATS ENSTTRP00000010166/1-898 TDWMNGTVII DSTVGKDTFF LITWNQNLPV ISLLDPTGNS AGNFIVDLPS ENSBTAP00000023081/1-933 NDWMNGTVII DSTVGKDTFF LITWNQQLPS IYLFDPDGIS MGTFIVDSAS bmy_16487T0/1-907 GGWMNGTVII DSTVGKDTFF LITWNQQLPV ISLLDPTGKP VGNFTVDSTS 551 600 BACU004620/1-524 QNGLFQYSRN CKVGVWTYTL QAKANPKTLT ITLNSQAANS SVPPITVNAK ENSP00000359594/1-919 KMAYLSIPGT AKVGTWAYNL QAKANPETLT ITVTSRAANS SVPPITVNAK ENSTTRP00000010166/1-898 KMAYLSIPGT TKVGVWTYSL QANAEGETLT ITVNSRAANS SVPPITVNAK ENSBTAP00000023081/1-933 KMAYLSIKGA TKVGVWTYNI QAKASSETLT ITVNSRAANS SVPPITVNAK bmy_16487T0/1-907 KMAYLSIPGT TKVGVWTYSL QAKANSETLT ITVNSRAAKS SVPPITVNAK 601 650 BACU004620/1-524 MNKDTNSFPS PMTVYAEILQ RYIPILGANV TAFIESNNGN TKVMELLDNG ENSP00000359594/1-919 MNKDVNSFPS PMIVYAEILQ GYVPVLGANV TAFIESQNGH TEVLELLDNG ENSTTRP00000010166/1-898 MNKDTNSFPS PMIVYAEILQ GYIPILGANV TAFIESNTGK TEVLELLDNG ENSBTAP00000023081/1-933 MNKDTNSYPS PLIVYAEILQ GYLPILGANV TAFIESKFGE TEVLELLDNG bmy_16487T0/1-907 MNKDTNSFPS PMIVYVEILQ GYIPILGANV TAFIESNNGN TEVLELLDNG 651 700 BACU004620/1-524 A--------- ---------- ---------- ---------- ---------- ENSP00000359594/1-919 A-GADSFKND GVYSRYFTAY TENGRYSLKV RAHGGANTAR LKLRPPLNRA ENSTTRP00000010166/1-898 AEGADSFKND GVYSRYFTTY KENGRYSLKV RAHGGENAVM RNLWHPLKRA ENSBTAP00000023081/1-933 A-GADSFKND GVYSRYFTTY KENGPYNLKV RAHGGENAVT WNLRHPLNRA bmy_16487T0/1-907 A-GADSFKND GVYSRYFTTF KENGRYSLKV RAHGGENAVM RNLRHPLNRA 701 750 BACU004620/1-524 ---------- ----GKIEEN PPRPETDEDT QTNLESFTRT APGGAFVVSN ENSP00000359594/1-919 AYIPGWVVN- ----GEIEAN PPRPEIDEDT QTTLEDFSRT ASGGAFVVSQ ENSTTRP00000010166/1-898 AYIPGWVVD- ----GNIKGN PPRPEIDENT QTNLESFTRT ASGGAFVVSN ENSBTAP00000023081/1-933 AYIPGWVVD- ----GNIEGN PPRPENDEDT QTNVESFTRI ATGGAFVVSN bmy_16487T0/1-907 AYIPGWVVNG IFNAGNIEGN PPRPEIDENT QTNLESFTRT ASGGAFVVSN 751 800 BACU004620/1-524 VSKLP-LPDL YPPSQITDLE ATPDGDETRI TWTASGDDFD VGKVQQYIIR ENSP00000359594/1-919 VPSLP-LPDQ YPPSQITDLD ATVHEDKIIL TWTAPGDNFD VGKVQRYIIR ENSTTRP00000010166/1-898 VPSPPYLTDV FPPSQITDLK ATSDEDEISL TWTAPGDDFD VGRVQKYIIR ENSBTAP00000023081/1-933 VPQSPSFLDL FPPSQITDLE ATSNEDEINL TWTAPGDDFD VGKVQEYIIR bmy_16487T0/1-907 VPSLPSSTDV FPPSQITDLE ATSDEDEISL TWTAPGDNFD VGKVQKYIIR 801 850 BACU004620/1-524 ISGSILDLRD NFDDALQVNT TDLLPNEANS KATFAFKPGN ISEENETYVF ENSP00000359594/1-919 ISASILDLRD SFDDALQVNT TDLSPKEANS KESFAFKPEN ISEENATHIF ENSTTRP00000010166/1-898 ISGSILNLRD NFDDALQVNT TDLLPNEVNS KENFTFKPGN ISEENATHIF ENSBTAP00000023081/1-933 ISESILDLRD NFDDALQVNT TALLPKEANS KETFTFKPGN ISEENETHIF bmy_16487T0/1-907 ISGSILDLRD NFDNALQVNT TDLLPSEANS KETFTFKPGN ISEENATHIF 851 900 BACU004620/1-524 ITIQSVDKSN LTSKVSNIAQ IALFI----- ---------P QADPSAGESH ENSP00000359594/1-919 IAIKSIDKSN LTSKVSNIAQ VTLFIPQAN- PDDIDPTPTP TPTPTPDKS- ENSTTRP00000010166/1-898 IAIQSVDKNN LTSRVSNIAQ VALFV----- ---------P PPED------ ENSBTAP00000023081/1-933 IAIQSVDKSN LTSKVSNIVQ VALFVQEDYI PDEIHPDTSP DKNP------ bmy_16487T0/1-907 IAIQSVDESN LTSQVSNIAQ AALFV----- ---------P QEDP------ 901 950 BACU004620/1-524 PNLRVNISTL VLSVVGCVAI VSVILSATIC ILKKKRNAIR ARTGF ENSP00000359594/1-919 HNSGVNISTL VLSVIGSVVI VNFILSTTI- ---------- ----- ENSTTRP00000010166/1-898 PKSGLSISTL VVLVVGTVII VSLILSITIC ---------- ----- ENSBTAP00000023081/1-933 PKSGLSISAL VLLVVGSVVI VSLILSITIC IVNKRRNPRR PRTGF bmy_16487T0/1-907 PTSGLSISTL MLLVVGTVII VSVILSITIY VLSKKRNSSR PRTGF