KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:45 2014 Check: 00 .. Name: BACU007018/1-546 Len: 622 Check: 4934 Weight: 1.00 Name: ENSP00000403459/1-555 Len: 622 Check: 8828 Weight: 1.00 Name: bmy_12746T0/1-593 Len: 622 Check: 5311 Weight: 1.00 Name: ENSBTAP00000023091/1-532 Len: 622 Check: 632 Weight: 1.00 Name: ENSTTRP00000007785/1-532 Len: 622 Check: 1315 Weight: 1.00 // 1 50 BACU007018/1-546 ---------- ---------- --VMELGLSP PHLSSSSEDL YLAPGTPPGT ENSP00000403459/1-555 MGKWRPGQGH TTGSVKPLSC SDAMELDLSP PHLSSSPEDL CPAPGTPPGT bmy_12746T0/1-593 ---MFLDRAG LRTLCPAGAS PDVMELGLSP PHLSSSSEDL YLAPGTPPGT ENSBTAP00000023091/1-532 ---------- ---------- ---MELGLSP LHLSSSPEDL YLASGTPPGT ENSTTRP00000007785/1-532 ---------- ---------- ---MELGLSP PHLSSSPEDL YLAPGTPPGT 51 100 BACU007018/1-546 PPPPDVLLSG EVKRSQPLPI PTSRKLLRQE ELRSTSLPSI PNPFPELCSP ENSP00000403459/1-555 PRPPDTPLPE EVKRSQPLLI PTTGRKLREE ERRATSLPSI PNPFPELCSP bmy_12746T0/1-593 PPPPDVPLSG EVKRSQPLPI PTSRKLLRQE ELRSTSLPSI PNPFPELCSP ENSBTAP00000023091/1-532 PPPLDAPLSG EVKRSQPLPI PTSRKLLREE ELQSTSLPSI PNPFPELCSP ENSTTRP00000007785/1-532 PPPPDVPLSG EVKRSQPLPI PTSRKLLRQE ELRSTSLPSI PNPFPELCSP 101 150 BACU007018/1-546 PSQTPILGGP SSARGLLPRD TSCPHVIKVY SEDGACRSVE VAAGATARYV ENSP00000403459/1-555 PSQSPILGGP SSARGLLPRD ASRPHVVKVY SEDGACRSVE VAAGATARHV bmy_12746T0/1-593 PSQTPILGGP SSARGLLPRD TSCPHVIKVY SEDGACRSVE VAAGATARYV ENSBTAP00000023091/1-532 SSQSPILGGS SSARGLLPRD TSCPHVIKVY SEDGTCRSVE VATGATARYV ENSTTRP00000007785/1-532 PSQTPILGGP SSARGLLPRD TSCPHVIKVY SEDGACRSVE VAAGATARYV 151 200 BACU007018/1-546 CEMLVQRSHA LSDENWGLVE CHPHLALERV LEDHESVAEV QAAWPIGGDS ENSP00000403459/1-555 CEMLVQRAHA LSDETWGLVE CHPHLALERG LEDHESVVEV QAAWPVGGDS bmy_12746T0/1-593 CEMLVQRSHA LSDENWGLVE CHPHLALERV LEDHESVAEV QAAWPIGGDS ENSBTAP00000023091/1-532 CEMLVQRSHA LSDENWGLVE CHPYLALERA LEDHESVAEV QAAWPIGGDS ENSTTRP00000007785/1-532 CEMLVQRSHA LSDENWGLVE GHPHLALERV LEDHESVAEV QAAWPIGGDS 201 250 BACU007018/1-546 RFLFRKNFAK YELFKSTPHS LFPEKMVSSC LDAHTGISHE DLIQNFLNAG ENSP00000403459/1-555 RFVFRKNFAK YELFKSSPHS LFPEKMVSSC LDAHTGISHE DLIQNFLNAG bmy_12746T0/1-593 RFLFRKNFAK YELFKSTPHS LFPEKMVSSC LDAHTGISHE DLIQNFLNAG ENSBTAP00000023091/1-532 RIVFRKNFAK YELFKSTPHS LFPEKMVSSC LDAHTGMSHE DVIQNFLNAG ENSTTRP00000007785/1-532 RFLFRKNFAK YELFKNTPHS LFPEKMVSSC LDAHTGISHE DLIQNFLNAG 251 300 BACU007018/1-546 SFPEIQGFLQ LRGSGRKLWK RFFCFLRRSG LYYSTKGTSK DPRHLQYVAD ENSP00000403459/1-555 SFPEIQGFLQ LRGSGRKLWK RFFCFLRRSG LYYSTKGTSK DPRHLQYVAD bmy_12746T0/1-593 SFPEIQGFLQ LRGSGRKLWK RFFCFLRRSG LYYSTKGTSK ---------- ENSBTAP00000023091/1-532 SFPEIQGFLQ LRGSGRKLWK RFFCFLRRSG LYYSTKGTSK DPRHLQYVAD ENSTTRP00000007785/1-532 SFPEIQGFLQ LRGSGRKLWK RFFCFLRRSG LYYSTKGTSK DPRHLQYVAD 301 350 BACU007018/1-546 VNESNVYVVT QGRKLYGMPT DFGFCIKPNK LRNGHKGLRI FCSEDEQSRT ENSP00000403459/1-555 VNESNVYVVT QGRKLYGMPT DFGFCVKPNK LRNGHKGLRI FCSEDEQSRT bmy_12746T0/1-593 ---------- -GRKLYGMPT DFGFCIKPNK LRNGHKGLRI FCSEDEQSRT ENSBTAP00000023091/1-532 VNESNVYVVT QGRKLYGMPT DFGFCIKPNK LRNGHKGLRL FCTEDERSRS ENSTTRP00000007785/1-532 VNESNVYVVT QGRKLYGMPT DFGFCIKPNK LRNGHKGLRI FCSEDEQSRT 351 400 BACU007018/1-546 CWLAAFRLFK YGVQLYKNYQ QALCRHLRPP CVGSPPLRSV SDNTLVAMDF ENSP00000403459/1-555 CWLAAFRLFK YGVQLYKNYQ QAQSRHLHPS CLGSPPLRSA SDNTLVAMDF bmy_12746T0/1-593 CWLAAFRLFK YGVQLYKNYQ QALCRHLRPP CVGSPPLRSV SDNTLVAMDF ENSBTAP00000023091/1-532 CWLAAFRLFK FGVQLYKNYQ QTLCRHMCPP CGGSPPSRSV SDDTLVAMDF ENSTTRP00000007785/1-532 CWLAAFRLFK YGVQLYKNYQ QALCRHLRPP CVGSPPLRSV SDNTLVAMDF 401 450 BACU007018/1-546 SGHAGRVIEN PREALSAALE EAQAWRVCTG DLLST----- ---------- ENSP00000403459/1-555 SGHAGRVIEN PREALSVALE EAQAWRKKTN HRLS------ ---------- bmy_12746T0/1-593 SGHAGRVIEN PREALSAALE EAQAWRVCTG DLLSTWVSME REEESEGRGE ENSBTAP00000023091/1-532 SGHAGRVIEN PREALSAALE EAQAWRKKTN HRLS------ ---------- ENSTTRP00000007785/1-532 SGHAGRVIEN PREALSAALE EAQAWRKKTN HRLS------ ---------- 451 500 BACU007018/1-546 ------RRRT TVSACPPRAR AR------AS VQVAIH--RT QPWFH----- ENSP00000403459/1-555 ---------- -----LPMPA SG------TS LSAAIH--RT QLWFH----- bmy_12746T0/1-593 APSCRRRLCI LQGLVIPQPR PDPPHPPHPA LVPRTHFPRG EPAAHRAAGP ENSBTAP00000023091/1-532 ---------- -----LPTPS SG------TS LSAAIH--RT QPWFH----- ENSTTRP00000007785/1-532 ---------- -----LPTPS SG------TS LSAAIH--CT QPWFH----- 501 550 BACU007018/1-546 --------GR ISREESQRLI GQQG------ ---LVDGV-F LVRESQRNPQ ENSP00000403459/1-555 --------GR ISREESQRLI GQQG------ ---LVDGL-F LVRESQRNPQ bmy_12746T0/1-593 GRRVRGRAGQ GSSAGDKRDL GQGGSRVSSG NIALSPGSVF LVRESQRNPQ ENSBTAP00000023091/1-532 --------GR ISREESQRLI RQQG------ ---LVDGL-F LVRESQRNPQ ENSTTRP00000007785/1-532 --------GR ISREESQRLI GQQG------ ---LVDGV-F LVRESQRNPQ 551 600 BACU007018/1-546 GFVLSLCHVQ KVKHYLILPC HYEGPGLLGA FRGSSWLSPE LDTGNRQLDI ENSP00000403459/1-555 GFVLSLCHLQ KVKHYLILPS EEEGRLYFSM DDGQTRFTDL L-----QLVE bmy_12746T0/1-593 GFVLSLCHVQ KVKHYLILPS EEEGRLYFSM DEGQTRFTDL L-----QLVE ENSBTAP00000023091/1-532 GFVLSLCHVQ KVKHYLILPS EEEGRLYFSM DDGLTRFTDL L-----QLVE ENSTTRP00000007785/1-532 GFVLSLCHVQ KVKHYLIMPS EEEGRLYFSM DEGQTRFTDL L-----QLVE 601 650 BACU007018/1-546 LGTPNTGIWR LSPR-RAKRT S- ENSP00000403459/1-555 FHQLNRGILP CLLRHCCTRV AL bmy_12746T0/1-593 FHQLNRGILP CLLRHCCTRV AL ENSBTAP00000023091/1-532 FHQLNRGILP CLLRYCCTRV AL ENSTTRP00000007785/1-532 FHQLNRGILP CLLRHCCTRV AL