KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:46 2014 Check: 00 .. Name: ENSP00000261893/1-547 Len: 570 Check: 2663 Weight: 1.00 Name: ENSBTAP00000023098/1-556 Len: 570 Check: 7576 Weight: 1.00 Name: ENSTTRP00000003538/1-554 Len: 570 Check: 3809 Weight: 1.00 Name: bmy_19955T0/1-340 Len: 570 Check: 9871 Weight: 1.00 Name: BACU001036/1-461 Len: 570 Check: 7714 Weight: 1.00 // 1 50 ENSP00000261893/1-547 MYRLMSAVTA RAAAPGGLAS SCGRRGVHQR AGLPPLGHGW VGGLGLGLGL ENSBTAP00000023098/1-556 MYRLLSAVMA RAATTGGCAW GCGRRAAHQR AGLPPLGPGW VGGLGLGLGL ENSTTRP00000003538/1-554 MYRLLSAVTN RAVTHGSCAW GCGRRAAHQR AGLPPLGPGW VGGLGLGLGL bmy_19955T0/1-340 ---------- ---------- ---------- SPPPPLLPSL ---------- BACU001036/1-461 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000261893/1-547 ALGVKLAGGL RGAAPAQSPA APDPEASPLA EP--PQEQSL APWSPQTPAP ENSBTAP00000023098/1-556 ALGVKLAGGL RGASPAPPAA APDPEALPQA EPLQAQEQPL APWSPQTPAP ENSTTRP00000003538/1-554 ALGVKLAGGL RGASPTPPTA APDPETPPQA EPLPLQEQPL AQWSPQTPTP bmy_19955T0/1-340 ---------- ----PRTSAA RPDCETPPEA EPLPPQEEPL AQWSPQTPMP BACU001036/1-461 ---------- ---------- ---------- ---------- -----QTPTP 101 150 ENSP00000261893/1-547 PCSRCFARAI ESSRDLLHRI K--------- -----DEVGA PGIVVGVSVD ENSBTAP00000023098/1-556 PHTRHFARAI DSSRDLLHRI K--------- -----DEVGA PGIVVGVSVD ENSTTRP00000003538/1-554 PHSRRFARAI DRSRDLLHRI K--------- -----DEVGA PGIVVGVSVD bmy_19955T0/1-340 PHSRRFARAI DRSRDLLHRI KVGGARSEVG GARSEDEVGA PGIVVGVSVD BACU001036/1-461 PHSRRFARAI DRSRDLLHRI K--------- -----DEVGA PGIVVGVSVD 151 200 ENSP00000261893/1-547 GKEVWSEGLG YADVENRVPC KPETVMRIAS ISKSLTMVAL AKLWEAGKLD ENSBTAP00000023098/1-556 GKEVWSEGLG YADVENRVPC KPETVMRIAS ISKSLTMVAI AKLWEAGKLD ENSTTRP00000003538/1-554 GKEVWSEGLG YADVENRVPC KPETVMRIAS ISKSLTMVAI AKLWEAGKLD bmy_19955T0/1-340 GKEVWSEGLG YADVENRVPC KPETVMRIAS ISKSLTMVAI AKLWEAGKLD BACU001036/1-461 GKEVWSEGLG YADVENRVPC KPETVMRIAS ISKSLTMVAI AKLWEAGKLD 201 250 ENSP00000261893/1-547 LDIPVQHYVP EFPEKEYEGE KVSVTTRLLI SHLSGIRHYE KDIKKVKEEK ENSBTAP00000023098/1-556 LDIPVQHYVP EFPEKEYEGE KVSVTTRLLI SHLSGIRHYE KDMKKVKEEK ENSTTRP00000003538/1-554 LDIPVQHYVP EFPEKEYEGE KVSVTTRLLI SHLSGIRHYE KDMKKVKEEK bmy_19955T0/1-340 LDIPVQHYVP EFPEKEYEGE KVSVTTRLLI SHLSGIRHYE KDMKKVKEEK BACU001036/1-461 LDTPVQHYVP EFPEKEYEGE KVSVTTRLLI SHLSGIRHYE KDMKKVKEEK 251 300 ENSP00000261893/1-547 AYKALKMMKE NVAFEQEKE- ----GKSNEK NDFTKFKTEQ ENEAKCRNSK ENSBTAP00000023098/1-556 AYKALKMMKE MMESDQEKEL KEKGGKSNEK NDFAKAKVEQ DNETKGRNSK ENSTTRP00000003538/1-554 AYKALKMMKG TMESDQEKEL KVKGGKSNEK NDFAKAKIEQ DNEAKGRNSK bmy_19955T0/1-340 AYKALKMMKG TMESDQEKEL KEKGGKSNEK NDFAKAKIEQ DNEAKGRNSK BACU001036/1-461 AYKALKMMKG TMESDQEKEL KEKGGKSNEK NDFAKAKIEQ DNEAKGRNSK 301 350 ENSP00000261893/1-547 PGKKKNDFEQ GELYLREKFE NSIESLRLFK NDPLFFKPGS QFLYSTFGYT ENSBTAP00000023098/1-556 PCKKKNDFEQ GELYLKEKFE NSIESLRLFK NDPLFFKPGS QFLYSTFGYT ENSTTRP00000003538/1-554 PCKKKNDFEQ GELYLKEKFE NSIESLRLFK NDPLFFKPGS QFLYSTFGYT bmy_19955T0/1-340 PCKRKNDFEQ GELYLKEKFE NSVESLRLFK NDPLFFKPGS QFLYSTFGYT BACU001036/1-461 PCKRKNDFEQ GELYLKEKFE NSIESLRLFK NDPLFFKPGS QFLYSTFGYT 351 400 ENSP00000261893/1-547 LLAAIVERAS GCKYLDYMQK IFHDLDMLTT VQEENEPVIY NRARFYVYNK ENSBTAP00000023098/1-556 LLAAIVERAS GYKYLDYMQK IFHDLDMLTT VQEENEPVIY NRARFYVYNK ENSTTRP00000003538/1-554 LLAAIVERAS GYKYLDYMQK IFHDLDMLTT VQEENEPVIY NRARFYVYNK bmy_19955T0/1-340 LLAAIVERAS GYKYLDYMQK IFHDLDMLTT VQEENEPVIY NRAR------ BACU001036/1-461 LLAAIVERAS GYKYLDYMQK IFHDLDMLTT VQEENEPVIY NRARFYVYNK 401 450 ENSP00000261893/1-547 KKRLVNTPYV DNSYKWAGGG FLSTVGDLLK FGNAMLYGYQ VGLFKNSNEN ENSBTAP00000023098/1-556 KKRLVNTPYV DNSYKWAGGG FLSTVGDLLK FGNAMLYGYQ VGLFKNANEN ENSTTRP00000003538/1-554 KRRLVNTPYV DNSYKWAGGG FLSTVGDLLK FGNAMLYGYQ VGLFKNSNEN bmy_19955T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU001036/1-461 KRRLVNTPYV DNSYKWAGGG FLSTVGDLLK FGNAMLYGYQ VGLFKNSNEN 451 500 ENSP00000261893/1-547 LLPGYLKPET MVMMWTPVPN TEMSWDKEGK YAMAWGVVER KQTYGSCRKQ ENSBTAP00000023098/1-556 LLPGYLKPET MLMIWTPVPN TEMSWDKEGK YAMAWGVVEK KQTYGSCRKQ ENSTTRP00000003538/1-554 LLPGYLKPET MLMIWTPVPN TEMSWDKEGK YAMAWGVVEK KQTYGSCRKQ bmy_19955T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU001036/1-461 LLPGYLKPET MLMIWTPVPN TEMSWDREGK YAMAWGVVEK KQTYGSCRKQ 501 550 ENSP00000261893/1-547 RHYASHTGGA VGASSVLLVL PEELDTETIN NKVPPRGIIV SIICNMQSVG ENSBTAP00000023098/1-556 RHYASHTGGA VGASSVLLVL PEELDAEALN NKVPPRGIVV SIICNMQSVG ENSTTRP00000003538/1-554 RHYASHTGGA VGASSVLLVL PEELDAEAIN NKFPPRGTVV SIICNMQSVG bmy_19955T0/1-340 ---------- ---------- ---------- ---------- ---------- BACU001036/1-461 RHYASHTGGA VGASSVLLVL PEELDAATIN NKFPPRGIVV SIICNMQSVG 551 600 ENSP00000261893/1-547 LNSTALKIAL EFDKDRSD-- ENSBTAP00000023098/1-556 LNSTALKIAL EFDKDRSDIP ENSTTRP00000003538/1-554 LNNTALKIAL EFDKDRSD-- bmy_19955T0/1-340 ---------- ---------- BACU001036/1-461 LNNTALKIAL EFDKDRSDMP