KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:47 2014 Check: 00 .. Name: ENSP00000259056/1-940 Len: 940 Check: 3729 Weight: 1.00 Name: bmy_10678T0/1-560 Len: 940 Check: 3820 Weight: 1.00 Name: ENSBTAP00000023104/1-940 Len: 940 Check: 2338 Weight: 1.00 Name: BACU010052/1-939 Len: 940 Check: 917 Weight: 1.00 Name: ENSTTRP00000014746/1-928 Len: 940 Check: 859 Weight: 1.00 // 1 50 ENSP00000259056/1-940 MNRIRKFFRG SGRVLAFIFV ASVIWLLFDM AALRLSFSEI NTRVIKEDIV bmy_10678T0/1-560 MNKIRKFFRG SGRVLAFIFV ASVIWLLFDM AALRLSFSEI NTRVLKEDII ENSBTAP00000023104/1-940 MNKIRKFFRG SGRVLAFIFA ASVIWLLFDM AALRLSFSEI NTQILKEDIV BACU010052/1-939 MNKIRKFFRG SGRVLAFIFV ASVIWLLFDM AALRLSFSEI NTRVLKEDIV ENSTTRP00000014746/1-928 MNKIRKFFRG SGRVLAFIFV ASVIWLLFDM AALRLSFSEI NTRVLKEDII 51 100 ENSP00000259056/1-940 RRERIGFRVQ PDQGKIFYSS IKEMKPPLRG HGKGAWGKEN VRKTEESVLK bmy_10678T0/1-560 RRERTGLRVQ PYQVKSLDGS VKEMKPPSKG HGKGVRGKEN FRKTEKSKLK ENSBTAP00000023104/1-940 RRERVGFRVQ SDQVKSLDSS RTEMKPPWKG HGKGVWGKEN FRKTEESKLK BACU010052/1-939 RRERIGLRVQ PYQVKSLDGS VKEMKPPLKG HGKGVWSKEN FRKTEKSKLK ENSTTRP00000014746/1-928 RRERIGFRVQ PYLGKSLDSS VKEMKLLSKG HGKGVWGKEN FRKTENSKLK 101 150 ENSP00000259056/1-940 VEVDLDQTQR ERKMQNALGR GKVVPLWHPA HLQTLPVTPN KQKTDGRGTK bmy_10678T0/1-560 VEDDLDQTQK ERKAQNVPGR GKVAPLWRPA YLQTPPGTFT KRKTEGRDVR ENSBTAP00000023104/1-940 VEDDLDQTQK ERKVQNAPGR GKVAPLWHPA YRQTHPVTFT KWKTEGRDIR BACU010052/1-939 VEDDLDQTQK ERKVQNAPGR GKVAPLWRPA YLQTPPVTFT KRKTKGRDVR ENSTTRP00000014746/1-928 VEDDLDQAQK ERKVQNAPGR GKVAPLWRPA YLLTPPVTFT KRKTEGRDVR 151 200 ENSP00000259056/1-940 PEASSHQGTP KQTTAQGAPK TSFIAAKGTQ VVKISVHMGR VSLKQEPRKS bmy_10678T0/1-560 PEVSSH-VTP KQKTAQGAEK TPFTAARGTP LAKTSVHTGP VGINQEGLKS ENSBTAP00000023104/1-940 PAVSSHPMTP KQMTAQGLEK TPFIAARGTP LAKISVHTGP VGINKQGPKS BACU010052/1-939 PEVSSH-VTP KQKTAQGAEK TPFTAARGTP LAKISVHTGP VGINQEGLKS ENSTTRP00000014746/1-928 PEVSSH-VTP KQKTAQGAEK TPFTAARGTP RDKISVHTGP VGINQEGLKS 201 250 ENSP00000259056/1-940 HSPSSDTSKL AAERDLNVTI SLSTDRPKQR SQAVANERAH PASTAVPKSG bmy_10678T0/1-560 LSLRSETSKQ AAERNPNVTI RLNVDRSKQQ FQAVANERTY PASPPGPKPR ENSBTAP00000023104/1-940 HGLNSDISKQ AAERYPTVTT SLSNDRLKQR YQAGVNERNY PASPPVPRPR BACU010052/1-939 LSLSSETSKQ AAERNPNVTI RLNVDRSKQQ FQAVANERTY PASPPGPKPR ENSTTRP00000014746/1-928 LSLSSETSKQ AAERNPNVTI HLNIDRSKQQ FQAVANERTY PASPPVPKPR 251 300 ENSP00000259056/1-940 EAMALNKTKT QSKEVNANKH KANTSLPFPK FTVNSNRLRK QSINETPLGS bmy_10678T0/1-560 EAIALNKTET QSKELNANKH KANKNLPFSK FIANSSRLKK QSINETQLGG ENSBTAP00000023104/1-940 EAIALNKTET PSKELNANRH KANKNLTFSK FIANSDRLKK PSINEIQWGG BACU010052/1-939 EAIALNKTET QSKELNANKH KANKNLPFSK SIANSSRLKK QSINETQLGG ENSTTRP00000014746/1-928 EAIALNKTET QSKELNANKH KANKNLPFSR FIANSSRLKK QSINETQLGG 301 350 ENSP00000259056/1-940 LSKDDGARGA HGKKLNFSES HLVIITKEEE QKADPKEVSN SKTKTIFPKV bmy_10678T0/1-560 LPKDDGAKVA DGKKLNLSES HVVIITKEEE LKTDTKEVPN SKTKTIFPTV ENSBTAP00000023104/1-940 LLKDDRAKVA GGKKLNLSES HVVIITKEEE LKTDTREVPN SNTKTTSTIV BACU010052/1-939 LPKDDGAKVA DGKKLNLSES HVVIITKEEE LKIDTKEVPN SKTKTIFPTV ENSTTRP00000014746/1-928 LPKVDGAKVA DGKKLNLSES HVVIITKEEG LKTDTKEVLN SKTKTIFPTV 351 400 ENSP00000259056/1-940 LGKSQSKHIS RNRSEMSSSS LAPHRVPLSQ TNHALTGGLE PAKINITAKA bmy_10678T0/1-560 LRKSQEEHIA RKSREASFSS LALQGAAVSQ TNQALAGGLG PARXNLTAKT ENSBTAP00000023104/1-940 LGKSQEKRIG MKNNEASFSS LALQRAAVSQ ANQALTEGQE LGKINLTAKT BACU010052/1-939 LRKSQEQHIA RKSREASFSS LALQGAAVSQ TNQALAGGLG PARINLTAKT ENSTTRP00000014746/1-928 LRKRQEEHVP RKSREASFSS LALQGAAVSQ TNQALAGGLG PARINLTAKT 401 450 ENSP00000259056/1-940 PSTEYNQSHI KALLPEDSGT HQVLRIDVTL SPRDPKAPGQ FGRPVVVPHG bmy_10678T0/1-560 QPAQLNQSHR KAHSPEDGGM HRVLRIDVTL SPRDPKAPGQ FGRPVVVPHG ENSBTAP00000023104/1-940 RPAQLNQSQT KALSPEDGRM HRVLRIDATL SPRDPKAPGQ FGRPVVVPHG BACU010052/1-939 QPAQLNQSHR KAHSPEDGGM HRVLRIDVTL SPRDPKAPGQ FGRPVVVPHG ENSTTRP00000014746/1-928 QPEQLNQSHR KARSPEDGGM HRVLRIDVTL SPRDPKAPGQ FGRPVVVPHG 451 500 ENSP00000259056/1-940 KEKEAERRWK EGNFNVYLSD LIPVDRAIED TRPAGCAEQL VHNNLPTTSV bmy_10678T0/1-560 KEKEVERRWK EGNFNVYLSD LIPVDRAIED TRPSGH---- ---------- ENSBTAP00000023104/1-940 KEKEVERRWK EGNFNVYLSD LIPVDRAIED TRPAGCAEQL VHNNLPTTSI BACU010052/1-939 KEKEVERRWK EGNFNVYLSD LIPVDRAIED TRPSGCAEQL VHNNLPTTSV ENSTTRP00000014746/1-928 KEKEVERRWK EGNFNVYLSD PI-------- ---SACAEQL VHNNLPTTSV 501 550 ENSP00000259056/1-940 IMCFVDEVWS TLLRSVHSVI NRSPPHLIKE ILLVDDFSTK DYLKDNLDKY bmy_10678T0/1-560 ---------- ---RKAHSPE DGG------- ---------- ---------- ENSBTAP00000023104/1-940 IMCFVDEVWS TLLRSVHSVL NRSPPHLIKE ILLVDDFSTK DYLKDNLDKY BACU010052/1-939 IMCFVDEVWS TLLRSVHSVL NRSPPHLIKE ILLVDDFSTK DYLKDNLDKY ENSTTRP00000014746/1-928 IMCFVDEVWS TLLRSVHSVL NRSPPHLIKE ILLVDDFSTK DYLKDNLDKY 551 600 ENSP00000259056/1-940 MSQFPKVRIL RLKERHGLIR ARLAGAQNAT GDVLTFLDSH VECNVGWLEP bmy_10678T0/1-560 -----MHRVL RID------- ---------- ---------- ---------- ENSBTAP00000023104/1-940 MSQFPKVRIL RLKERHGLIR ARLAGAQKAT GDVLTFLDSH VECNIGWLEP BACU010052/1-939 MSQFPKVRIL HLKERHGLIR ARLAGAQNAT GDVLTFLDSH VECNIGWLEP ENSTTRP00000014746/1-928 MSQFPKVRIL HLKERHGLIR ARLAGAQNAT GDVLTFLDSH VECNVGWLEP 601 650 ENSP00000259056/1-940 LLERVYLSRK KVACPVIEVI NDKDMSYMTV DNFQRGIFVW PMNFGWRTIP bmy_10678T0/1-560 ----VTLSPR DPKAP----- ---------- -----GQFGR PV-------- ENSBTAP00000023104/1-940 LLERVYLSRK KVACPVIEVI NDKDMSYMTV DNFQRGIFVW PMNFGWRTIP BACU010052/1-939 LLERVYLSRK KVACPVIEVI NDKDMSYMTG DNFQRGIFVW PMNFGWRTIP ENSTTRP00000014746/1-928 LLERVYLSRK KVACPVIEVI NDKDMSYMTV DNFQRGIFVW PMNFGWRTIP 651 700 ENSP00000259056/1-940 PDVIAKNRIK ETDTIRCPVM AGGLFSIDKS YFFELGTYDP GLDVWGGENM bmy_10678T0/1-560 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023104/1-940 PDVVAKNKIK ETDIIRCPVM AGGLFSIDKN YFFELGTYDP GLDVWGGENM BACU010052/1-939 PDVVARNKIK ETDIIRCPVM AGGLFSIDKN YFFELGTYDP GLDVWGGENM ENSTTRP00000014746/1-928 PDVVAKHKIK ETDIIRCPVM AGGLFSIDKN YFFELGTYDP GLDVWGGENM 701 750 ENSP00000259056/1-940 ELSFKVWMCG GEIEIIPCSR VGHIFRNDNP YSFPKDRMKT VERNLVRVAE bmy_10678T0/1-560 ---------- ----VVP--- ---------- ---------- ---------- ENSBTAP00000023104/1-940 ELSFKVWMCG GEIEIVPCSR VGHIFRNDNP YSFPKDRMKT VERNLGRVAE BACU010052/1-939 ELSFKVWMCG GEIEIIPCSR VGHIFRNDNP YSFPKDRMKT VERNLVRVAE ENSTTRP00000014746/1-928 ELSFKVWMCG GEIEIIPCSR VGHIFRNDNP YSFPKDRMKT VERNLVRVAE 751 800 ENSP00000259056/1-940 VWLDEYKELF YGHGDHLIDQ GLDVGNLTQQ RELRKKLKCK SFKWYLENVF bmy_10678T0/1-560 ---------- --HG------ --------KE KEVERRWKEG NFNVYLSDLI ENSBTAP00000023104/1-940 VWLDEYKELF YGHGNHLIDQ GLDVGNLTQQ RELRKKLKCK SFKWYLENVF BACU010052/1-939 VWLDEYRELF YGHGDHLIDQ GLDAGNLTQQ RELRKKLKCK SFKWYLENVF ENSTTRP00000014746/1-928 VWLDEYKELF YGHGDHLTDQ GLDVGNLTQQ RELRKKLKCK SFKWYLENVF 801 850 ENSP00000259056/1-940 PDLRAPIVRA SGVLINVALG KCISIENTTV ILEDCDGSKE LQQFNYTWLR bmy_10678T0/1-560 PVDRA----- ---------- ----IEDTR- ---------- ---------- ENSBTAP00000023104/1-940 PDLKAPIVRA SGVLINVALG KCISIRNTTA ILEDCDGSSQ LQQFNYTWLR BACU010052/1-939 PDLKAPIVRA SGVLINEALG KCISIKNTTA ILEDCDGSSK LQQFNYTWLR ENSTTRP00000014746/1-928 PDLKAPIVRA SGVLISEALG KCISIKNTTA ILEDCDGSSK LQQFNYTWLR 851 900 ENSP00000259056/1-940 LIKCGEWCIA PIPDKGAVRL HPCDNRNKGL KWLHKSTSVF HPELVNHIVF bmy_10678T0/1-560 ---------- ---------- ---------- ---------- -PS------- ENSBTAP00000023104/1-940 LIKHGAWCLA PVPDNGALRL HLCDNRNKGL RWLHKSTSVF RPELVNHLVF BACU010052/1-939 LIKQGEWCLA PFPDNGALRL HPCDNRNKGL KWLHKSTSVF HPELVNHIVF ENSTTRP00000014746/1-928 LIKQGEWCLA PFPDNGALRL HPCDNRNKGL KWLHKSTSVF HPELVNHIVF 901 950 ENSP00000259056/1-940 ENNQQLLCLE GNFSQKILKV AACDPVKPYQ KWKFEKYYEA bmy_10678T0/1-560 ---------- ---------- ---------- ---------- ENSBTAP00000023104/1-940 GNYHQLLCLE GDFTQKTLKV APCDPAKPDQ KWKFENYYED BACU010052/1-939 GNYHQLLCLE GNFSQKTLKV AACDPVKPYQ KWKFEKYYED ENSTTRP00000014746/1-928 GNYHQLLCLE GNFSQKTLKV AACDPVKPYQ KWKFEKYYED