KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:48 2014 Check: 00 .. Name: ENSTTRP00000001275/1-637 Len: 812 Check: 4390 Weight: 1.00 Name: ENSP00000236040/1-804 Len: 812 Check: 6244 Weight: 1.00 Name: ENSBTAP00000023110/1-736 Len: 812 Check: 420 Weight: 1.00 Name: bmy_17904T0/1-408 Len: 812 Check: 5281 Weight: 1.00 Name: BACU000371/1-736 Len: 812 Check: 6976 Weight: 1.00 // 1 50 ENSTTRP00000001275/1-637 ---------- ---------- ---------- ---------- ---------- ENSP00000236040/1-804 MAVRALKLLT TLLAVVAAAS QAEVESEAGW GMVTPDLLFA EGTAAYARGD ENSBTAP00000023110/1-736 MAARALRLLT ILLAVAATAS QAEAESEAGW DLTAPDLLFA EGTAAYARGD bmy_17904T0/1-408 MAARSLRLLT TLLAVATAAC RSEAESEAEW DMTAPDLLFA EGAAAYARGD BACU000371/1-736 MAAHSLRLLT TLLAVATAAC RAEAESEAEW DMTAPDLLFA EGAAAYARGD 51 100 ENSTTRP00000001275/1-637 ---------- ---------- ---------- ---------- ---------- ENSP00000236040/1-804 WPGVVLSMER ALRSRAALRA LRLRCRTQCA ADFPWELDPD WSPSPAQASG ENSBTAP00000023110/1-736 WAGVVLSMER ALRSRAALRA LRLRCRTRCA ADLPWEVDPD SPPSLAQASG bmy_17904T0/1-408 WAGVVLSMER ALRSRAALRA LRLRCRTRCA ADLPWELDPD SPPSLAPASG BACU000371/1-736 WAGVVLSMER ALRSRAALRA LRLRCRTGCA ADLPWELDPD SPPSLAQASG 101 150 ENSTTRP00000001275/1-637 ---------- ---------- ---------- ---------- ---------- ENSP00000236040/1-804 AAALRDLSFF GGLLRRAACL RRCLGPPAAH SLSEEMELEF RKRSPYNYLQ ENSBTAP00000023110/1-736 ASALHDLRFF GGLLRRAACL RRCLGPSTAH SLSEELELEF RKRSPYNYLQ bmy_17904T0/1-408 AAALHDLRFF GGLLRRAACL RRCLGPSATH PLSEELELEF SKRSPYNYLQ BACU000371/1-736 AAALHDLRFF GGLLRRAACL RRCLGPSATH PLSEELELEF SKRSPYNYLQ 151 200 ENSTTRP00000001275/1-637 -----INKLE KAVAAAHTFF -GNPEHMEMR QT-DYYQTMS GVKK-DXXXX ENSP00000236040/1-804 VAYFKINKLE KAVAAAHTFF VGNPEHMEMQ QNLDYYQTMS GVKEADFKDL ENSBTAP00000023110/1-736 VAYFKINKLE KAVAAAHTFF VGNPEHMEMR QNLDYYQTMS GVKEADFKDL bmy_17904T0/1-408 VAYFKINKLE KAVAAAHTFF VGNPEHMEMR QNLDYYQTMS GVKEADFKDL BACU000371/1-736 VAYFKINKLE KAVAAAHTFF VGNPEHMEMR QNLDYYQTMS GVKKADFKDL 201 250 ENSTTRP00000001275/1-637 XXXXXXHEFR LGVRLYSEEQ LQEAVPHLET ALREYFAADE ECRALCEGPY ENSP00000236040/1-804 ETQPHMQEFR LGVRLYSEEQ PQEAVPHLEA ALQEYFVAYE ECRALCEGPY ENSBTAP00000023110/1-736 EAKPHMHEFR LGVRLYSEEQ PQEAVPHLEA ALREYFVAAE ECRALCEGPY bmy_17904T0/1-408 EAKPHMHEFR LGVRLYSEEQ LQEAAPHLET ALREYFVADE ECRALCEGPY BACU000371/1-736 EAKPHMHEFR LGVHLYSEEQ LQEAAPHLET ALREYFVADE ECRALCEGPY 251 300 ENSTTRP00000001275/1-637 DYDGYNYLEY NADLFQAITD HYIQVLSCKQ NCVTELASHP SREKPFEDFL ENSP00000236040/1-804 DYDGYNYLEY NADLFQAITD HYIQVLNCKQ NCVTELASHP SREKPFEDFL ENSBTAP00000023110/1-736 DYDGYNYLEY NADLFQAITD HYIQVLSCKQ NCVTELASHP SREKPFEDFL bmy_17904T0/1-408 DYDGYNYLEY NADLFQAITD HYIQVLSCKQ NCVTELASHP SREKPFEDFL BACU000371/1-736 DYDGYNYLEY NADLLQAITD HYIQVLSCKQ NCVTELASHP SREKPFEDFL 301 350 ENSTTRP00000001275/1-637 PSHYNYLQFA YYNXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000236040/1-804 PSHYNYLQFA YYNIGNYTQA VECAKTYLLF FPNDEVMNQN LAYYAAMLGE ENSBTAP00000023110/1-736 PSHYNYLQFA YYNIGNYTQA IECAKTYLLF FPNDEVMSQN LAYYTAMLGE bmy_17904T0/1-408 PSHYNYLQFA YYNIGNYTQA IECAXTYLLF FPNDEVMSQN LAYYTAMLGE BACU000371/1-736 PSHYNYLQFA YYNIGNYTQA IECAKTYLLF FPNDEVMSQN LAYYTAMLGE 351 400 ENSTTRP00000001275/1-637 XXXXXXXXXX SAQEYHQRSL LEKELLFFAY DVFGIPFVDP DSWTPEEVIP ENSP00000236040/1-804 EHTRSIGPRE SAKEYRQRSL LEKELLFFAY DVFGIPFVDP DSWTPEEVIP ENSBTAP00000023110/1-736 EQARSIGPRE SAQEYRQRSL LEKELLFFAY DVFGIPFVDP DSWTPVEVIP bmy_17904T0/1-408 EQARSIGPRE SAQEYHQRSL LEKELLFFAY DVFGIPFVDP DSWTPEEVIP BACU000371/1-736 EQARSIGPRE SAQEYHQRSL LEKELLFFAY DVFGIPFVDP DSWTPEEVIP 401 450 ENSTTRP00000001275/1-637 KRLQEKQKSE RETAARISQE IGNLMKEIET LVEEKTKESL DVNRLTQEGG ENSP00000236040/1-804 KRLQEKQKSE RETAVRISQE IGNLMKEIET LVEEKTKESL DVSRLTREGG ENSBTAP00000023110/1-736 KRLQEKQKSE RETAARISQE IGNLMKEIET LVEEKTKESL DVSRLTREGG bmy_17904T0/1-408 KRLQEKQK-- ---------- ---------- ---------- ---------- BACU000371/1-736 KRLQEKQKSE RETAARISQE IGNLMKEIET LVEEKTKESM DVSRLTREGG 451 500 ENSTTRP00000001275/1-637 PLLYDGIRLT MTSKVLNGSQ RVVMDGVISE DECRELQRLT NAAATLGDGY ENSP00000236040/1-804 PLLYEGISLT MNSKLLNGSQ RVVMDGVISD HECQELQRLT NVAATSGDGY ENSBTAP00000023110/1-736 PLLYDGIRLT MNSKVLNGSQ RVVMDGVISD EECQELQRLT NAAATSGDGY bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 PLLYDGIRLT MTSKVLNGSQ RVVMDGVISD DECRELQRLT NAAATLGDGY 501 550 ENSTTRP00000001275/1-637 RGQTSPHTPS EKFYGVTVFK ALKLGQEGKV PLQSAHLYYN VTEKVRRVMA ENSP00000236040/1-804 RGQTSPHTPN EKFYGVTVFK ALKLGQEGKV PLQSAHLYYN VTEKVRRIME ENSBTAP00000023110/1-736 RGQTSPHTPS EKFYGVTVFK ALKLGQEGKV PLQSAHLYYN VTEKVRRVME bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 RGQTSPHTPS EKFYGVTVFK ALKLGQEGKV PLQSAHLYYN VTEKVRRVMA 551 600 ENSTTRP00000001275/1-637 SYFHLDSPLY FSYSHLVCRT AIEEAQAERK DGSHPVHVDN CILNAEALVC ENSP00000236040/1-804 SYFRLDTPLY FSYSHLVCRT AIEEVQAERK DDSHPVHVDN CILNAETLVC ENSBTAP00000023110/1-736 SYFRLDTPLY FSYSHLVCRT AIEEAQAERK DGSHPVHVDN CILNAEALVC bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 SYFRLDSPLY FSYSHLVCRT AIEEAQAERK DGSHPVHVDN CILNAEALVC 601 650 ENSTTRP00000001275/1-637 IKEPPAYTFR DYXXXXXXXX XXXXXXXXXX XXXXXXXXAE VQPQCGRAVG ENSP00000236040/1-804 VKEPPAYTFR DYSAILYLNG DFDGGNFYFT ELDAKTVTAE VQPQCGRAVG ENSBTAP00000023110/1-736 IKEPPAYTFR DFSAILYLNE DFDGGNFYFT ELDAKTVTAE VQPQCGRAVG bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 VKEPPAYTFR DYSAILYLNA DFDGGNFYFT ELDAKTVTAE VQPQCGRAVG 651 700 ENSTTRP00000001275/1-637 FSSGTENPHG VKAVTRGQRC AIALWFTLDA RHSERVRAVR -------CCD ENSP00000236040/1-804 FSSGTENPHG VKAVTRGQRC AIALWFTLDP RHSERVRAAR AGESSWCCGD ENSBTAP00000023110/1-736 FSSGTENPHG VKAVTRGQRC AIALWFTLDA RHSERERV-- ---------- bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 FSSGTENPHG VKAVTRGQRC AIALWFTLDA RHSERDRV-- ---------- 701 750 ENSTTRP00000001275/1-637 LFLEGPCSAS TFPSHCR--L RRERSTWESR ETPRFGTVSP WSPALL---P ENSP00000236040/1-804 PFPERPWFAF LFPKSHCQWL RHERSTWDTS SN----ALSL WSHCLVLPGP ENSBTAP00000023110/1-736 ---------- ---------- ---------- ---------- ---------- bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000001275/1-637 AGNGVQVGGS GDNMGSDPFL -PSLGTTSAA SAQGVGPAGI RMSSGPLEKP ENSP00000236040/1-804 AVNGIQVGKE VKTGSDAEFL VPSLGPTSAV LFQRVGPAGK EMSLGPLRNL ENSBTAP00000023110/1-736 ---------- ----QADDLV KMLFSPEEMD LPHEQPQEAQ EGTPEPLQEP bmy_17904T0/1-408 ---------- ---------- ---------- ---------- ---------- BACU000371/1-736 ---------- ----QADDLV KMLFSPEETD LPQEQPQEAQ EGPPEPVQGS 801 850 ENSTTRP00000001275/1-637 SCSPGSST-- -- ENSP00000236040/1-804 PCPLGSSS-- -- ENSBTAP00000023110/1-736 VSSSESGHKD EL bmy_17904T0/1-408 ---------- -- BACU000371/1-736 VSSSESGHKD EL