KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:19:58 2014 Check: 00 .. Name: bmy_04258T0/1-1304 Len: 1340 Check: 5789 Weight: 1.00 Name: ENSTTRP00000000163/1-1278 Len: 1340 Check: 7829 Weight: 1.00 Name: ENSBTAP00000023130/1-1292 Len: 1340 Check: 2907 Weight: 1.00 Name: ENSP00000455426/1-1284 Len: 1340 Check: 9178 Weight: 1.00 Name: BACU001881/1-1224 Len: 1340 Check: 219 Weight: 1.00 // 1 50 bmy_04258T0/1-1304 ---------- ----MQGSGP G---ALESGI LPGRALPAVP AGVRQIFTRS ENSTTRP00000000163/1-1278 ---------- ----EEGEAS DFSLPWDSSV TASGGLEGEP ECDRKTSRVL ENSBTAP00000023130/1-1292 MSRRKQAKPR SVKVEEGEAS DFSLAWDSSV TASGGLEGEP ECDRKTSRVL ENSP00000455426/1-1284 --------MH KKRVEEGEAS DFSLAWDSSV TAAGGLEGEP ECDQKTSRAL BACU001881/1-1224 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_04258T0/1-1304 GPEAPCGPRG GAWALGAGSE PALRDPERPF SRPCLSLQVL GLAAVRAW-G ENSTTRP00000000163/1-1278 EDRNSVTSQE -----ERNED DEDMEDESIY TCDHCQQDFE SLADLTDHRA ENSBTAP00000023130/1-1292 EDRNSVTSQE -----ERNED DEDVEDESIY TCDHCQQDFE SLAELTDHRA ENSP00000455426/1-1284 EDRNSVTSQE -----ERNED DEDMEDESIY TCDHCQQDFE SLADLTDHRA BACU001881/1-1224 ---------- ---------- ---MEDESIY TCDHCQQDFE SLADLTDHRA 101 150 bmy_04258T0/1-1304 YGTPGLSRAS VMVYVFVSAD GDDDPQLSWV ASSPSSKDVA SPTQMIGDGC ENSTTRP00000000163/1-1278 HRCPG----- ---------D GDDDPQLSWV ASSPSSKDVA SPTQMIGDGC ENSBTAP00000023130/1-1292 HRCPG----- ---------D GDDDPQLSWV ASSPSSKDVA SPTQMIGDGC ENSP00000455426/1-1284 HRCPG----- ---------D GDDDPQLSWV ASSPSSKDVA SPTQMIGDGC BACU001881/1-1224 HRCPG----- ---------D GDDDPQLSWV ASSPSSKDVA SPTQMIGDGC 151 200 bmy_04258T0/1-1304 DLGLGEEEGG TGLPYPCQFC DKSFIRLSYL KRHEQIHSDK LPFKCTYCSR ENSTTRP00000000163/1-1278 DLGLGEEEGG TGLPYPCQFC DKSFIRLSYL KRHEQIHSDK LPFKCTYCSR ENSBTAP00000023130/1-1292 DLGLGEEEGG TGLPYPCQFC DKSFIRLSYL KRHEQIHSDK LPFKCTYCSR ENSP00000455426/1-1284 DLGLGEEEGG TGLPYPCQFC DKSFIRLSYL KRHEQIHSDK LPFKCTYCSR BACU001881/1-1224 DLGLGEEEGG TGLPYPCQFC DKSFIRLSYL KRHEQIHSDK LPFKCTYCSR 201 250 bmy_04258T0/1-1304 LFKHKRSRDR HIKLHTGDKK YHCHECEAAF SRSDHLKIHL KTHSSSKPFK ENSTTRP00000000163/1-1278 LFKHKRSRDR HIKLHTGDKK YHCHECEAAF SRSDHLKIHL KTHSSSKPFK ENSBTAP00000023130/1-1292 LFKHKRSRDR HIKLHTGDKK YHCHECEAAF SRSDHLKIHL KTHSSSKPFK ENSP00000455426/1-1284 LFKHKRSRDR HIKLHTGDKK YHCHECEAAF SRSDHLKIHL KTHSSSKPFK BACU001881/1-1224 LFKHKRSRDR HIKLHTGDKK YHCHECEAAF SRSDHLKIHL KTHSSSKPFK 251 300 bmy_04258T0/1-1304 CTVCKRGFSS TSSLQSHMQA HKKNKEHLAK SEKEAKKDDF MCDYCEDTFS ENSTTRP00000000163/1-1278 CTVCKRGFSS TSSLQSHMQA HKKNKEHLAK SEKEAKKDDF MCDYCEDTFS ENSBTAP00000023130/1-1292 CTVCKRGFSS TSSLQSHMQA HKKNKEHLAK SEKEAKKDDF MCDYCEDTFS ENSP00000455426/1-1284 CTVCKRGFSS TSSLQSHMQA HKKNKEHLAK SEKEAKKDDF MCDYCEDTFS BACU001881/1-1224 CTVCKRGFSS TSSLQSHMQA HKKNKEHLAK SEKEAKKDDF MCDYCEDTFS 301 350 bmy_04258T0/1-1304 QTEELEKHVL TRHPQLSEKA DLQCIHCPEV FVDENALLAH IHQAHANQKH ENSTTRP00000000163/1-1278 QTEELEKHVL TRHPQLSEKA DLQCIHCPEV FVDENALLAH IHQAHANQKH ENSBTAP00000023130/1-1292 QTEELEKHVL TRHPQLSEKA DLQCIHCPEV FVDENALLAH IHQAHANQKH ENSP00000455426/1-1284 QTEELEKHVL TRHPQLSEKA DLQCIHCPEV FVDENTLLAH IHQAHANQKH BACU001881/1-1224 QTEELEKHVL TRHPQLSEKA DLQCIHCPEV FVDENALLAH IHQAHANQKH 351 400 bmy_04258T0/1-1304 KCPMCPEQFS SVEGVYCHLD SHRQPDSSNH SVSPDPVLGS VASMSSATPD ENSTTRP00000000163/1-1278 KCPMCPEQFS SVEGVYCHLD SHRQPDSSNH SVSPDPVLGS VASMSSATPD ENSBTAP00000023130/1-1292 KCPMCPEQFS SVEGVYCHLD SHRQPDSSNH SVSPDPVLGS VASMSSATPD ENSP00000455426/1-1284 KCPMCPEQFS SVEGVYCHLD SHRQPDSSNH SVSPDPVLGS VASMSSATPD BACU001881/1-1224 KCPMCPEQFS SVEGVYCHLD SHRQPDSSNH SVSPDPVLGS VASMSSATPD 401 450 bmy_04258T0/1-1304 SSASVERGST PDSTLKPLRG QKKMRDDGQG WSKVVYSCPY CSKRDFNSLA ENSTTRP00000000163/1-1278 SSASVERGST PDSTLKPLRG QKKMRDDGQG WSKVVYSCPY CSKRDFNSLA ENSBTAP00000023130/1-1292 SSASVERGST PDSTLKPLRG QKKMRDDGQG WSKVVYSCPY CSKRDFNSLA ENSP00000455426/1-1284 SSASVERGST PDSTLKPLRG QKKMRDDGQG WTKVVYSCPY CSKRDFNSLA BACU001881/1-1224 SSASVERGST PDSTLKPLRG QKKMRDDGQG WSKVVYSCPY CSKRDFNSLA 451 500 bmy_04258T0/1-1304 VLEIHLKTIH ADKPQQSHTC QICLDSMPTL YNLNEHVRKL HKNHAYPVMQ ENSTTRP00000000163/1-1278 VLEIHLKTIH ADKPQQSHTC QICLDSMPTL YNLNEHVRKL HKNHAYPVMQ ENSBTAP00000023130/1-1292 VLEIHLKTIH ADKPQQSHTC QICLDSMPTL YNLNEHVRKL HKNHAYPVMQ ENSP00000455426/1-1284 VLEIHLKTIH ADKPQQSHTC QICLDSMPTL YNLNEHVRKL HKNHAYPVMQ BACU001881/1-1224 VLEIHLKTIH ADKPQQSHTC QICLDSMPTL YNLNEHVRKL HKNHAYPVMQ 501 550 bmy_04258T0/1-1304 FSNISAFHCN YCPEMFADIN SLQEHIRVSH CGPNSNPPDG NNAFFCNQCS ENSTTRP00000000163/1-1278 FSNISAFHCN YCPEMFADIN SLQEHIRVSH CGPNSNPPDG SNAFFCNQCS ENSBTAP00000023130/1-1292 FGSISAFHCN YCPEMFADIN SLQEHIRVSH CGPNANPPDG NNAFFCNQCS ENSP00000455426/1-1284 FGNISAFHCN YCPEMFADIN SLQEHIRVSH CGPNANPSDG NNAFFCNQCS BACU001881/1-1224 FSNISAFHCN YCPEMFADIN SLQEHIRVSH CGPNSNPPDG NNAFFCNQCS 551 600 bmy_04258T0/1-1304 MGFLTESSLT EHIQQAHCSV GSAKLESPVV QPAQSFMEVY SCPYCTNSPI ENSTTRP00000000163/1-1278 MGFLTESSLT EHIQQAHCSV GSAKLESPVV QPAQSFMEVY SCPYCTNSPI ENSBTAP00000023130/1-1292 MGFLTESSLT EHIQQAHCSV GSAKLESPVV QPTQSFMEVY SCPYCTNSPI ENSP00000455426/1-1284 MGFLTESSLT EHIQQAHCSV GSAKLESPVV QPTQSFMEVY SCPYCTNSPI BACU001881/1-1224 MGFLTESSLT EHIQQAHCSV GSAKLESPVV QPAQSFMEVY SCPYCTNSPI 601 650 bmy_04258T0/1-1304 FGSILKLTKH IKENHKNIPL AHSKKSKAEQ SPVSSDVEVS SPKRQRLSVS ENSTTRP00000000163/1-1278 FGSILKLTKH IKENHKNIPL AHSKKSKAEQ SPVSSDVEVS SPKRQRLSVS ENSBTAP00000023130/1-1292 FGSILKLTKH IKENHKNIPL AHSKKSKAEQ SPVSSDVEVS SPKRQRLSAS ENSP00000455426/1-1284 FGSILKLTKH IKENHKNIPL AHSKKSKAEQ SPVSSDVEVS SPKRQRLSAS BACU001881/1-1224 FGSILKLTKH IKENHKNIPL AHSKKSKAEQ SPVSSDVEVS SPKRQRLSVS 651 700 bmy_04258T0/1-1304 ANSISNGEYP CNQCDLKFSN FESFQTHLKL HLELLLRKQA CPQCKEDFDS ENSTTRP00000000163/1-1278 ANSISNGEYP CNQCDLKFSN FESFQTHLKL HLELLLRKQA CPQCKEDFDS ENSBTAP00000023130/1-1292 ANSISNGEYP CNQCDLKFSN FESFQTHLKL HLELLLRKQA CPQCKEDFDS ENSP00000455426/1-1284 ANSISNGEYP CNQCDLKFSN FESFQTHLKL HLELLLRKQA CPQCKEDFDS BACU001881/1-1224 ANSISNGEYP CNQCDLKFSN FESFQTHLKL HLELLLRKQA CPQCKEDFDS 701 750 bmy_04258T0/1-1304 QESLLQHLTV HYMTTSTHYV CESCDKQFSS VDDLQKHLLD MHTFVLYHCT ENSTTRP00000000163/1-1278 QESLLQHLTV HYMTTSTHYV CESCDKQFSS VDDLQKHLLD MHTFVLYHCT ENSBTAP00000023130/1-1292 QESLLQHLTV HYMTTSTHYV CESCDKQFSS VDDLQKHLLD MHTFVLYHCT ENSP00000455426/1-1284 QESLLQHLTV HYMTTSTHYV CESCDKQFSS VDDLQKHLLD MHTFVLYHCT BACU001881/1-1224 QESLLQHLTV HYMTTSTHYV CESCDKQFSS VDDLQKHLLD MHTFVLYHCT 751 800 bmy_04258T0/1-1304 LCQEVFDSKV SIQVHLAVKH SNEKKMYRCT ACNWDFRKEA DLQVHVKHSH ENSTTRP00000000163/1-1278 LCQEVFDSKV SIQVHLAVKH SNEKKMYRCT ACNWDFRKEA DLQVHVKHSH ENSBTAP00000023130/1-1292 LCQEVFDSKV SIQVHLAVKH SNEKKMFRCT ACNWDFRKEA DLQVHVKHSH ENSP00000455426/1-1284 LCQEVFDSKV SIQVHLAVKH SNEKKMYRCT ACNWDFRKEA DLQVHVKHSH BACU001881/1-1224 LCQEVFDSKV SIQVHLAVKH SNEKKMYRCT ACNWDFRKEA DLQVHVKHSH 801 850 bmy_04258T0/1-1304 LGNPAKAHKC IFCGETFSTE VELQCHITTH SKKYNCKFCS KAFHAIILLE ENSTTRP00000000163/1-1278 LGNPAKAHKC IFCGETFSTE VELQCHITTH SKKYNCKFCS KAFHAIILLE ENSBTAP00000023130/1-1292 LGNPARAHKC IFCGETFSTE VELQCHITTH SKKYNCKFCS KAFHAIILLE ENSP00000455426/1-1284 LGNPAKAHKC IFCGETFSTE VELQCHITTH SKKYNCKFCS KAFHAIILLE BACU001881/1-1224 LGNPAKAHKC IFCGETFSTE VELQCHITTH SKKYNCKFCS KAFHAIILLE 851 900 bmy_04258T0/1-1304 KHLREKHCVF DAATENGTAN GVPPATAKKA EPADLQGMLL KNPEAPNSHE ENSTTRP00000000163/1-1278 KHLREKHCVF DAATENGTAN GVPPATAKKA EPADLQGMLL KNPEAPNSHE ENSBTAP00000023130/1-1292 KHLREKHCVF DAAAENGTAN GVPPAAAKKA EPADLPGVLL KNPEAPNSHE ENSP00000455426/1-1284 KHLREKHCVF DAATENGTAN GVPPMATKKA EPADLQGMLL KNPEAPNSHE BACU001881/1-1224 KHLREKHCVF DAATENGTAN GVPPATAKKA EPADLQGMLL KNPEAPNSHE 901 950 bmy_04258T0/1-1304 ASEDDVDASE PMYGCDICGA AYTMEVLLQN HRLRDHNIRP GEDDGSRKKA ENSTTRP00000000163/1-1278 ASEDDVDASE PMYGCDICGA AYTMEVLLQN HRLRDHNIRP GEDDGSRKKA ENSBTAP00000023130/1-1292 ASEDDVDASE PMYGCDICGA AYTMEVLLQN HRLRDHNIRP GEDDGSRKKA ENSP00000455426/1-1284 ASEDDVDASE PMYGCDICGA AYTMEVLLQN HRLRDHNIRP GEDDGSRKKA BACU001881/1-1224 ASEDDVDASE PMYGCDICGA AYTMEVLLQN HRLRDHNIRP GEDDGSRKKA 951 1000 bmy_04258T0/1-1304 EFIKGSHKCN VCSRTFFSEN GLREHLQTHR GPAKHYMCPI CGERFPSLLT ENSTTRP00000000163/1-1278 EFIKGSHKCN VCSRTFFSEN GLREHLQTHR GPAKHYMCPI CGERFPSLLT ENSBTAP00000023130/1-1292 EFIKGSHKCN VCSRTFFSEN GLREHLQTHR GPAKHYMCPI CGERFPSLLT ENSP00000455426/1-1284 EFIKGSHKCN VCSRTFFSEN GLREHLQTHR GPAKHYMCPI CGERFPSLLT BACU001881/1-1224 EFIKGSHKCN VCSRTFFSEN GLREHLQTHR GPAKHYMCPI CGERFPSLLT 1001 1050 bmy_04258T0/1-1304 LTEHKVTHSK SLDTGTCRIC KMPLQSEEEF IEHCQMHPDL RNSLTGFRCV ENSTTRP00000000163/1-1278 LTEHKVTHSK SLDTGTCRIC KMPLQSEEEF IEHCQMHPDL RNSLTGFRCV ENSBTAP00000023130/1-1292 LTEHKVTHSK SLDTGTCRIC KMPLQSEEEF IEHCQMHPDL RNSLTGFRCV ENSP00000455426/1-1284 LTEHKVTHSK SLDTGTCRIC KMPLQSEEEF IEHCQMHPDL RNSLTGFRCV BACU001881/1-1224 LTEHKVTHSK SLDTGTCRIC KMPLQSEEEF IEHCQMHPDL RNSLTGFRCV 1051 1100 bmy_04258T0/1-1304 VCMQTVTSTL ELKIHGTFHM QKLAGSSAAS SPNGQGLQKL YKCALCLKEF ENSTTRP00000000163/1-1278 VCMQTVTSTL ELKIHGTFHM QKLAGSSAAS SPNGQGLQKL YKCALCLKEF ENSBTAP00000023130/1-1292 VCMQTVTSTL ELKIHGTFHM QKLAGSSAAS SPNGQGLQKL YKCALCLKEF ENSP00000455426/1-1284 VCMQTVTSTL ELKIHGTFHM QKLAGSSAAS SPNGQGLQKL YKCALCLKEF BACU001881/1-1224 VCMQTVTSTL ELKIHGTFHM QKLAGSSAAS SPNGQGLQKL YKCALCLKEF 1101 1150 bmy_04258T0/1-1304 RSKQDLVKLD VNGLPYGLCA GCMARSSNGQ VGGLAPPEPA DRPCAGLRCP ENSTTRP00000000163/1-1278 RSKQDLVKLD VNGLPYGLCA GCMARSSNGQ VGGLAPPEPA DRPCAGLRCP ENSBTAP00000023130/1-1292 RSKQDLVKLD VNGLPYGLCA GCMARSANGQ VGGLAPPEPA DRPCAGLRCP ENSP00000455426/1-1284 RSKQDLVKLD VNGLPYGLCA GCMARSANGQ VGGLAPPEPA DRPCAGLRCP BACU001881/1-1224 RSKQDLVKLD VNGLPYGLCA GCMARSSNGQ VGGLAPPEPA DRPCAGLRCP 1151 1200 bmy_04258T0/1-1304 ECSVKFESAE DLESHMQVDH RDLTPETSGP RKGAQTSPVP R--------- ENSTTRP00000000163/1-1278 ECSVKFESAE DLESHMQVDH RDLTPETSGP RKGAQTSPVP RKKTYQCIKC ENSBTAP00000023130/1-1292 ECSVKFESAE DLESHMQVDH RDLTPETSGP RKGAQTSPVP RKKTYQCIKC ENSP00000455426/1-1284 ECSVKFESAE DLESHMQVDH RDLTPETSGP RKGTQTSPVP RKKTYQCIKC BACU001881/1-1224 ECSVKFESAE DLESHMQVDH RDLTPETSGP RKGAQTSPVP RKKTYQCIKC 1201 1250 bmy_04258T0/1-1304 --VSERARGF PSSLCCLFPD RG---DAKQI SGVSFPGGPL LVPLAGGQDL ENSTTRP00000000163/1-1278 QMTFENEREI QIHVANHMIE EGINHECKLC NQMFDSPAKL LCHLIEHSFE ENSBTAP00000023130/1-1292 QMTFENEREI QIHVANHMIE EGINHECKLC NQMFDSPAKL LCHLIEHSFE ENSP00000455426/1-1284 QMTFENEREI QIHVANHMIE EGINHECKLC NQMFDSPAKL LCHLIEHSFE BACU001881/1-1224 QMTFENEREI QIHVANHMIE EGINHECKLC NQMFDSPAKL LCHLIEHSFE 1251 1300 bmy_04258T0/1-1304 GKGHLPQVPA GRQGCLLRVF HCGIRTGARN SGILRGRESE REGGLERLKG ENSTTRP00000000163/1-1278 GMGGTFKCPV ----CFTXXX XXX------- ---------- --------XX ENSBTAP00000023130/1-1292 GMGGTFKCPV ----CFTVFV QAN------- ---------- --------KL ENSP00000455426/1-1284 GMGGTFKCPV ----CFTVFV QAN------- ---------- --------KL BACU001881/1-1224 GMGGTFKCPV ----CFTVFV QAN------- ---------- --------KL 1301 1350 bmy_04258T0/1-1304 ESAVGAPKGS PGQLPTEASE PEALTKITQL QRETSE---- ENSTTRP00000000163/1-1278 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XNHTMSQHAQ ENSBTAP00000023130/1-1292 QQHIFAVHGQ EDKIYDCSQC PQKFFFQTEL QNHTMSQHAQ ENSP00000455426/1-1284 QQHIFAVHGQ EDKIYDCSQC PQKFFFQTEL QNHTMSQHAQ BACU001881/1-1224 QQHIFAVHGQ EDKIYDCSQC PQKFFFQTEL QNHTMSQHAQ