KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:20:02 2014 Check: 00 .. Name: ENSP00000310094/1-1235 Len: 1505 Check: 4710 Weight: 1.00 Name: ENSBTAP00000023163/1-1048 Len: 1505 Check: 6444 Weight: 1.00 Name: bmy_00774T0/1-1297 Len: 1505 Check: 5302 Weight: 1.00 Name: BACU011913/1-1494 Len: 1505 Check: 6738 Weight: 1.00 // 1 50 ENSP00000310094/1-1235 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 ---------- ---------- ---------- ---------- ---------- BACU011913/1-1494 MGSCQAGHNL HLCLAHHPPL VCATLILLLL GLSGLGLGGF LLTHKTGLRS 51 100 ENSP00000310094/1-1235 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 ---------- ---------- ---------- ---------- ---------- BACU011913/1-1494 PDIPQDWVSF LRSFGQLTLC PVNGTVKGKW RGSHVVGLLT TLNFGDDRDR 101 150 ENSP00000310094/1-1235 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 ---------- ---------- ---------- ---------- ---------- BACU011913/1-1494 NKTQTFQTQV QGSRMGLKGS SAGELVLITA RVTTERTPGT CLYFSAAPGI 151 200 ENSP00000310094/1-1235 ---------- ---------- ---------- ---------- -------MPA ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- -------MPA bmy_00774T0/1-1297 ---------- ---------- ---------- ---------- -------MPA BACU011913/1-1494 LPSSQPPMSC SEEGAGNATL NPRMAEECVS VWSHEGQAPL SGPPGATMPA 201 250 ENSP00000310094/1-1235 GGRAGSLKDP DVAELFFKDD PEKLFSDLRE IGHGSFGAVY FARDVRNSEV ENSBTAP00000023163/1-1048 GGRAGSLKDP DVAELFFKDD PEKLFSDLRE IGHGSFGAVY FARDVRNSEV bmy_00774T0/1-1297 GGRAGSLKDP DVAELFFKDD PEKLFSDLRE IGHGSFGAVY FARDVRNSEV BACU011913/1-1494 GGRAGSLKDP DVAELFFKDD PEKLFSDLRE IGHGSFGAVY FARDVRNSEV 251 300 ENSP00000310094/1-1235 VAIKKMSYSG KQSNEKWQDI IKEVRFLQKL RHPNTIQYRG CYLREHTAWL ENSBTAP00000023163/1-1048 VAIKKMSYSG KQSNEKWQDI IKEVRFLQKL RHPNTIQYRG CYLREHTAWL bmy_00774T0/1-1297 VAIKKMSYSG KQSNEKWQDI IKEVRFLQKL RHPNTIQYRG CYLREHTAWL BACU011913/1-1494 VAIKKMSYSG KQSNEKWQDI IKEVRFLQKL RHPNTIQYRG CYLREHTAWL 301 350 ENSP00000310094/1-1235 VMEYCLGSAS DLLEVHKKPL QEVEIAAVTH GALQGLAYLH SHNMIHRDVK ENSBTAP00000023163/1-1048 VMEYCLGSAS DLLEVHKKPL QEVEIAAVTH GALQGLAYLH SHNMIHRDVK bmy_00774T0/1-1297 VMEYCLGSAS DLLEVHKKPL QEVEIAAVTH GALQGLAYLH SHNMIHRDVK BACU011913/1-1494 VMEYCLGSAS DLLEVHKKPL QEVEIAAVTH GALQGLAYLH SHNMIHRDVK 351 400 ENSP00000310094/1-1235 AGNILLSEPG LVKLGDFGSA SIMAPANSFV GTPYWMAPEV ILAMDEGQYD ENSBTAP00000023163/1-1048 AGNILLSEPG LVKLGDFGSA SIMAPANSFV GTPYWMAPEV ILAMDEGQYD bmy_00774T0/1-1297 AGNILLSEPG LVKLGDFGSA SIMAPANSFV GTPYWMAPEV ILAMDEGQYD BACU011913/1-1494 AGNILLSEPG LVKLGDFGSA SIMAPANSFV GTPYWMAPEV ILAMDEGQYD 401 450 ENSP00000310094/1-1235 GKVDVWSLGI TCIELAERKP PLFNMNAMSA LYHIAQNESP VLQSGHWSEY ENSBTAP00000023163/1-1048 GKVDVWSLGI TCIELAERKP PLFNMNAMSA LYHIAQNESP VLQSGHWSEY bmy_00774T0/1-1297 GKVDVWSLGI TCIELAERKP PLFNMNAMSA LYHIAQNESP VLQSGHWSEY BACU011913/1-1494 GKVDVWSLGI TCIELAERKP PLFNMNAMSA LYHIAQNESP VLQSGHWSEY 451 500 ENSP00000310094/1-1235 FRNFVDSCLQ KIPQDRPTSE VLLKHRFVLR ERPPTVIMDL IQRTKDAVRE ENSBTAP00000023163/1-1048 FRNFVDSCLQ KIPQDRPTSE VLLKHRFVLR ERPPTVIMDL IQRTKDAVRE bmy_00774T0/1-1297 FRNFVDSCLQ KIPQDRPTSE VLLKHRFVLR ERPPTVIMDL IQRTKDAVRE BACU011913/1-1494 FRNFVDSCLQ KIPQDRPTSE VLLKHRFVLR ERPPTVIMDL IQRTKDAVRE 501 550 ENSP00000310094/1-1235 LDNLQYRKMK KILFQEAPNG PGAEAPEEEE EAEPYMHRAG TLTSLESSHS ENSBTAP00000023163/1-1048 LDNLQYRKMK KILFQEAPNG PGAEAPEEEE EAEPYMHRAG TLTSLESSHS bmy_00774T0/1-1297 LDNLQYRKMK KILFQEAPNG PGAEAPEEEE EAEPYMHRAG TLTSLESSHS BACU011913/1-1494 LDNLQYRKMK KILFQEAPNG PGAEAPEEEE EAEPYMHRAG TLTSLESSHS 551 600 ENSP00000310094/1-1235 VPSMSISASS QSSSVNSLAD ASDNEEEEEE EEEEEEEEEG PEAREMAMMQ ENSBTAP00000023163/1-1048 VPSMSISASS QSSSVNSLAD ASDNEEEEEE EEEEEEEEEG PEAREMAMMQ bmy_00774T0/1-1297 VPSMSISASS QSSSVNSLAD ASDNEEEEEE EEEEEEEEEG PEAREMAMMQ BACU011913/1-1494 VPSMSISASS QSSSVNSLAD ASDNEEEEEE EEEEEEEEEG PEAREMAMMQ 601 650 ENSP00000310094/1-1235 EGEHTVTSHS SIIHRLPGSD NLYDDPYQPE ITPSPLQPPA APAPTSTTSS ENSBTAP00000023163/1-1048 EGEHTVTSHS SIIHRLPVCS CAPQGPA-PG LTGFSVQPPA APAPTSATSS bmy_00774T0/1-1297 EGEHTVTSHS SIIHRLPGSD NLYDDPYQPE MTPGPLQPPA APAPTSTTSS BACU011913/1-1494 EGEHTVTSHS SIIHRLPGSD NLYDDPYQPE MTPGPLQPPA APAPTSTTSS 651 700 ENSP00000310094/1-1235 ARRRAYCRNR DHFATIRTAS LVSRQIQEHE QDSALREQLS GYKRMRRQHQ ENSBTAP00000023163/1-1048 ARRRAYCRNR DHFATIRTAS LVSRQIQEHE QDSALREQLS GYKRMRRQHQ bmy_00774T0/1-1297 ARRRAYCRNR DHFATIRTAS LVSRQIQEHE QDSALREQLS GYKRMRRQHQ BACU011913/1-1494 ARRRAYCRNR DHFATIRTAS LVSRQIQEHE QDSALREQLS GYKRMRRQHQ 701 750 ENSP00000310094/1-1235 KQLLALESRL RGEREEHSAR LQRELEAQRA GFGAEAEKLA RRHQAIGEKE ENSBTAP00000023163/1-1048 KQLLALESRL RGEREEHSAR LQRELEAQRA GFGAEAEKLS RRHQAIGEKE bmy_00774T0/1-1297 KQLLALESRL RGEREEHSAR LQRELEAQRA GFGAEAEKLS RRHQAIGEKE BACU011913/1-1494 KQLLALESRL RGEREEHSAR LQRELEAQRA GFGAEAEKLS RRHQAIGEKE 751 800 ENSP00000310094/1-1235 ARAAQAEERK FQQHILGQQK KELAALLEAQ KRTYKLRKEQ LKEELQENPS ENSBTAP00000023163/1-1048 ARAAQAEERK FQQHILGQQK KELAALLEAQ KRTYKLRKEQ LKEELQENPS bmy_00774T0/1-1297 ARAAQAEERK FQQHILGQQK KELAALLEAQ KRTYKLRKEQ LKEELQENPS BACU011913/1-1494 ARAAQAEERK FQQHILGQQK KELAALLEAQ KRTYKLRKEQ LKEELQENPS 801 850 ENSP00000310094/1-1235 TPKREKAEWL LRQKEQLQQC QAEEEAGLLR RQRQYFELQC RQYKRKMLLA ENSBTAP00000023163/1-1048 TPKREKAEWL LRQKEQLQQC QAEEEAGLLR RQRQYFELQC RQYKRKMLLA bmy_00774T0/1-1297 TPKREKAEWL LRQKEQLQQC QAEEEAGLLR RQRQYFELQC RQYKRKMLLA BACU011913/1-1494 TPKREKAEWL LRQKEQLQQC QAEEEAGLLR RQRQYFELQC RQYKRKMLLA 851 900 ENSP00000310094/1-1235 RHSLDQDLLR EDLNKKQTQK DLECALLLRQ HEATRELELR QLQAVQRTRA ENSBTAP00000023163/1-1048 RHSLDQDLLR EDLNKKQTQK DLECALLLRQ HEATRELELR QLQAVQRTRA bmy_00774T0/1-1297 RHSLDQDLLR EDLNKKQTQK DLECALLLRQ HEATRELELR QLQAVQRTRA BACU011913/1-1494 RHSLDQDLLR EDLNKKQTQK DLECALLLRQ HEATRELELR QLQAVQRTRA 901 950 ENSP00000310094/1-1235 ELTRLQHQTE LGNQLEYNKR REQELRQKHA AQVRQQPKSL KVRAGQRPPG ENSBTAP00000023163/1-1048 ELTRLQHQTE LGNQLEYNKR REQELRQKHA AQVRQQPKSL K--------- bmy_00774T0/1-1297 ELTRLQHQTE LGNQLEYNKR REQELRQKHA AQVRQQPKSL KVRAGQRPLG BACU011913/1-1494 ELTRLQHQTE LGNQLEYNKR REQELRQKHA AQVRQQPKSL KVRAGQRPLG 951 1000 ENSP00000310094/1-1235 LPLPIPGALG PPNTGTPIEQ QPCSPGQEAV LDQRMLGEEE EAVGERRILG ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 LPLPIPGALG PPNTGTPREE QSCSSGQEA- -DQRILGEEE EAVPERRILG BACU011913/1-1494 LPLPIPGALG PPNTGTPREE QSCSSGQEA- -DQRILGEEE EAVPERRILG 1001 1050 ENSP00000310094/1-1235 KEGATLEPKQ QRILGEESGA PSPSPQKHGS LVDEEVWGLP E-EIEELRVP ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 KEGAALEPEE QRMLGEESGA PSPSPQKRRS LVDEEVWGLP EQEIEELRVP BACU011913/1-1494 KEGAALEPEE QRMLGEESGA PSPSPQKRRS LVDEEVWGLP EQEIEKLRVP 1051 1100 ENSP00000310094/1-1235 SLVPQERSIV GQEEAGTWSL WGKEDESLLD EEFELGWVQG PALTPVPEEE ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 SPAPQERSIV GQEASGEWRL WGKEDGSLLD EEFELGWVQG PTLTPVPEEE BACU011913/1-1494 SPAPQERSIV GQEASGEWTL WGKEDGSLLD EEFELGWVQG PTLTPVPEEE 1101 1150 ENSP00000310094/1-1235 EEEEEGAPIG TPRDPGDGCP SPDIPPEPPP THLRPCPASQ LPGLLSHGLL ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- ---------- bmy_00774T0/1-1297 EEEEEGAPFR TPRDPGDGCP SPDIPPEPPP THLRPSPISQ LPGLLSHGLL BACU011913/1-1494 EEEEEGAPFR TPRDPGDGCP SPDIPPEPPP AHLRPSPTSQ LPGLLSHGLL 1151 1200 ENSP00000310094/1-1235 AGLSFAVGSS SGLLPLLLLL LLPLLAAQGG GGLQAALLAL EVGLVGLGAS ENSBTAP00000023163/1-1048 ---------- ---------- ---------- ---------- -SKELQIKKQ bmy_00774T0/1-1297 AGLSFAVGSS SGLLPLLLLL LLPLLAAQGG GGLQAALLAL ESKELQIKKQ BACU011913/1-1494 AGLSFAVGSS SGLLPLLLLL LLPLLAAQGG GGLQAALLAL ESKELQIKKQ 1201 1250 ENSP00000310094/1-1235 YLLLCTA--- ------LHL- --------PS SLFLLLAQGT ALGAVLGLSW ENSBTAP00000023163/1-1048 FQETCKIQTR QYKALRAHLL ETTPKAQHKS LLKRLKEEQT RKLAILAEQY bmy_00774T0/1-1297 FQETCKIQTR QYKALRAHLL ETTPKAQHKS LLKRLKEEQT RKLAILAEQY BACU011913/1-1494 FQETCKIQTR QYKALRAHLL ETTPKAQHKS LLKRLKEEQT RKLAILAEQY 1251 1300 ENSP00000310094/1-1235 RRGLMGV--- -PLGLGAAWL LAWPGL---- --ALPLVAMA AGGRWVRQQG ENSBTAP00000023163/1-1048 DQSISEMLSS QALRLDETQE AEFQALRQQL QQELELLNAY QSKIKIRTES bmy_00774T0/1-1297 DQSISEMLSS QALRLDETQE AEFQALRQQL QQELELLNAY QSKIKIRTES BACU011913/1-1494 DQSISEMLSS QALRLDETQE AEFQALRQQL QQELELLNAY QSKIKIRTES 1301 1350 ENSP00000310094/1-1235 PRVRRGISRL WLRVLLRLSP MAFR------ ALQGCGAVGD RGLF------ ENSBTAP00000023163/1-1048 QH-ERELREL EQRVALRRAL LEQRVEEELL ALQTGRSERI RSLLERQARE bmy_00774T0/1-1297 QH-ERELREL EQRVALRRAL LEQRVEEELL ALQTGRSERI RSLLERQARE BACU011913/1-1494 QH-ERELREL EQRVALRRAL LEQRVEEELL ALQTGRSERI RSLLERQARE 1351 1400 ENSP00000310094/1-1235 --ALYPKTNK DGFRSRLPVP GPRRRNPRTT QHPLALLARV W----VLCKG ENSBTAP00000023163/1-1048 IEAFDAESMR LGFSSM--AL GGIPAEAAAQ GYPAPPPAPA WPSRPVPRSG bmy_00774T0/1-1297 IEAFDAESMR LGFSSM--AL GGIPAEAAAQ GYPAPPPAPA WPSRPVPRSG BACU011913/1-1494 IEAFDAESMR LGFSSM--AL GGIPAEAAAQ GYPAPPPAPA WPSRPVPRSG 1401 1450 ENSP00000310094/1-1235 WNWRLARASQ GLASHLPPWA IHTL------ ASW------- GLLRGERPTR ENSBTAP00000023163/1-1048 AHWSHGPPPP GMPP--PAWR QPALLAPPGP PNWLGPPAQS GTPRGGALLL bmy_00774T0/1-1297 AHWSHGPPPP GMPP--PAWR QPSLLAPPGP PSWLGPPAQS GTPRGGALLL BACU011913/1-1494 AHWSHGPPPP GMPP--PAWR QPSLLAPPGP PSWLGPPAQS GTPRGGALLL 1451 1500 ENSP00000310094/1-1235 I---PRLLPR SQR------Q LGPPASRQPL PGTLAGRRSR TRQSRALPP- ENSBTAP00000023163/1-1048 LRNSPQPLRR AASGGSGSDS VGPPAA--AV PGPLS--RST SVASHILNGS bmy_00774T0/1-1297 LRNSPQPLRR AASGGSGSDS VGPPAA--AV PGPLS--RST SVASHILNGS BACU011913/1-1494 LRNSPQPLRR AASGGSGSDS VGPPAA--AV PGPLS--RST SVASHILNGS 1501 1550 ENSP00000310094/1-1235 ---WR ENSBTAP00000023163/1-1048 SHFYS bmy_00774T0/1-1297 SHFYS BACU011913/1-1494 SHFYS