KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:03 2014 Check: 00 .. Name: ENSP00000411825/1-873 Len: 950 Check: 7780 Weight: 1.00 Name: ENSBTAP00000023165/1-914 Len: 950 Check: 7460 Weight: 1.00 Name: ENSTTRP00000003424/1-868 Len: 950 Check: 7735 Weight: 1.00 Name: bmy_20401T0/1-875 Len: 950 Check: 3881 Weight: 1.00 Name: BACU014639/1-677 Len: 950 Check: 1210 Weight: 1.00 // 1 50 ENSP00000411825/1-873 ---------- ---------- ---------- ---------M ATFISVQLKK ENSBTAP00000023165/1-914 SGAHVRQPLS PPVRRYSAAL GPRRPPVVSL ARRAAEALAM AAFISVQLKK ENSTTRP00000003424/1-868 ---------- ---------- ---------- ---------M ATFVSVQLKK bmy_20401T0/1-875 ---------- ---------- ---------- ---------M ATFVSVQLKK BACU014639/1-677 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000411825/1-873 TSEVDLAKPL VKFIQQTYPS GGEEQAQYCR AAEELSKLRR AAVGRPLDKH ENSBTAP00000023165/1-914 TSEVDLAKPL VKFIQQTYPS GGEEQAQYCR AAEELSKLRR AALGRPLDKH ENSTTRP00000003424/1-868 TSEVDLAKPL VKFIQQTYPS GGEEQAQYCR AAEELSKLRR AALGRPLDKH bmy_20401T0/1-875 TSEVDLAKPL VKFIQQTYPS GGEEQAQYCR AAEELSKLRR AALGRPLDKH BACU014639/1-677 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000411825/1-873 EGALETLLRY YDQICSIEPK FPFSENQ--- ---------- --ICLTFTWK ENSBTAP00000023165/1-914 EGALETLLRY YDQICSIEPK FPFSENQ--- ---------- --ICLTFTWK ENSTTRP00000003424/1-868 ESALETLLRY YDQICSIEPK FPFSENQ--- ---------- --ICLTFTWK bmy_20401T0/1-875 EGALETLLRK DTAVLGCR-D LIFNEIQEGN MNFFSFFSLF IKICLTFTWK BACU014639/1-677 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000411825/1-873 DAFDKGSLFG GSVKLALASL GYEKSCVLFN CAALASQIAA EQNLDNDEGL ENSBTAP00000023165/1-914 DAFDKGSLFG GSVKLALASL GYEKSCVLFN CAALASQIAA EQNLDNDEGL ENSTTRP00000003424/1-868 DAFDKGSLFG GSVKLALASL GYEKSCVLFN CAALASQIAA EQNLDNDEGL bmy_20401T0/1-875 DAFDKGSLFG GSVKLALASL GYEKSCVLFN CAALASQIAA EQNLDNDEGL BACU014639/1-677 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000411825/1-873 KIAAKHYQFA SGAFLHIKET VLSALSREPT VDISPDTVGT LSLIMLAQAQ ENSBTAP00000023165/1-914 KIAAKHYQFA SGAFLHIKET VLSALNREPT VDISPDTVGT LSLIMLAQAQ ENSTTRP00000003424/1-868 KIAAKHYQFA SGAFLHIKET VLSALNREPT VDISPDTVGT LSLIMLAQAQ bmy_20401T0/1-875 KIAAKHYQFA SGAFLHIKET VLSALNREPT VDISPDTVGT LSLIMLAQAQ BACU014639/1-677 ---------- ---------- ---------- ---------- ----MLAQAQ 251 300 ENSP00000411825/1-873 EVFFLKATRD KMKDAIIAKL ANQAADYFGD AFKQCQYKDT LPKYFYFQEV ENSBTAP00000023165/1-914 EVFFLKAKRD KMKDAIIAKL ANQAADYFGD AFKQCQYKDT LPK-----EV ENSTTRP00000003424/1-868 EVFFLKATRD KMKDAIIAKL ANQAADYFGD AFKQCQYKDT LPK-----EV bmy_20401T0/1-875 EVFFLKATRD KMKDAIIAKL ANQAADYFGD AFKQCQYKDT LPK------- BACU014639/1-677 EVFFLKATRD KMKDAIIAKL ANQAADYFGD AFKQCQYKDT LPK-----EV 301 350 ENSP00000411825/1-873 FPVLAAKHCI MQANAEYHQS ILAKQQKKFG EEIARLQHAA ELIKTVASRY ENSBTAP00000023165/1-914 FPVLAAKPCI MQAYAEYHQS ILAKQQKKFG EEIARLQHAA ELIKTVASRY ENSTTRP00000003424/1-868 FPVLAAKHCI MQAYAEYHQS ILAKQQKKFG EEIARLQHAA ELIKTVASRY bmy_20401T0/1-875 -----VSYC- ---------- ---------- --FCKYLHAA ELIKTVASRY BACU014639/1-677 FPVLAAKHCI MQAYAEYHQS ILAKQQKKFG EEIARLQHAA ELIKTVASRY 351 400 ENSP00000411825/1-873 DEYVNVKDFS DKINRALAAA KKDNDFIYHD RVPDLKDLDP IGKATLVKST ENSBTAP00000023165/1-914 DEYVNVKEFS DKISRALTAA KKDNDFIYHD RVPDLKDLDP IGKATLVKST ENSTTRP00000003424/1-868 DEYVNVKEFS DKINRALTAA KKDNDFIYHD RVPDLKDLDP IGKATLVKST bmy_20401T0/1-875 DEYVNVKEFS DKINRALTAA KKDNDFIYHD RVPDLKDLDA IGKATLVKST BACU014639/1-677 DEYVNVKEFS DKINRALTAA KKDNDFIYHD RVPDLKDLDP IGKATLVKST 401 450 ENSP00000411825/1-873 PVNVPISQKF TDLFEKMVPV SVQQSLAAYN QRKADLVNRS IAQMREATTL ENSBTAP00000023165/1-914 PVNVPISQKF TDLFEKMVPV SVQQSLAAYN QRKADLVNRS IAQMREATTL ENSTTRP00000003424/1-868 PVSVPISQKF TDLFEKMVPV SVQQSLAACG QRKADLVNRS IAQMREATTL bmy_20401T0/1-875 PVSVPISQKF TDLFEKMVPV SVQQSLAACG QRKADLVNRS IAQMREATTL BACU014639/1-677 PVSVPISQKF TDLFEKMVPV SVQQSLAACG QRKADLVNRS IAQMREATTL 451 500 ENSP00000411825/1-873 ANG------- --------VL ASLNLPAAIE DVSGDTVPQS ILTKSRSVIE ENSBTAP00000023165/1-914 ANG------- --------VL ASLNLPAAIE DLSGDTVPQS ILTKSTSVIE ENSTTRP00000003424/1-868 ANG------- --------VL ASLNLPAAIE DISGDTVPQS ILTKSTSVIE bmy_20401T0/1-875 ANGQVELNFH KFISKVLMVL ASLNLPAAIE DISGDTVPQS ILTKSTSVIE BACU014639/1-677 ANG------- --------VL ASLNLPAAIE DISGDTVPQS ILTKSTSVIE 501 550 ENSP00000411825/1-873 QGGIQTVDQL IKELPELLQR NREILDESLR LLDEEEATDN DLRAKFKERW ENSBTAP00000023165/1-914 QGGIQTVDQL FKELPELLQR NREILDESLR LLDEEEATDN DLRAKFKERW ENSTTRP00000003424/1-868 QGGIQTVDQL IKELPELLQR NREILDESLR LLDEEETTDN DLRAKFKERW bmy_20401T0/1-875 QGGIQTVDQL IKELPELLQR NREILDESLR LLDEEETTDS DLRAKFKERW BACU014639/1-677 QGGIQTVDQL IKELPELLQR NREILDESLR LLDEEETTDN DLRAKFKERW 551 600 ENSP00000411825/1-873 QRTPSNELYK PLRAEGTNFR TVLDKAVQAD GQVKECYQSH RDTIVLLCKP ENSBTAP00000023165/1-914 QRTPSNELYK PLRAEGNNFR ITLDKAVHAD GQVKERYQAH RDTIVLLCKP ENSTTRP00000003424/1-868 QRTPSNELYK PLRAEGSNFR TVLDKAVQAD GQVKERYQAH RDTIALLCKP bmy_20401T0/1-875 QRTPSNELYK PLRAEGSNFR TVLDKAMQAD GQVKERYQAH RDTIALLCKP BACU014639/1-677 QRTPSNELYK PLRAEGSNFR TVLDKAMQAD GQVKERYQAH RDTIALLCKP 601 650 ENSP00000411825/1-873 EPELNAAIPS ANPAKTMQGS EVVNVLKSLL SNLDEVKKER EGLENDLKSV ENSBTAP00000023165/1-914 EPELNAAIPS ANPAKTMQGS EVVNVLKSLL TNLDEVKKER EGLENDLKSV ENSTTRP00000003424/1-868 ELELNAAIPS ANPAKTMQGS EVVNVLKSLL TNLDEV-KER EGLENDLKSV bmy_20401T0/1-875 ELELNAAIPS ANPAKTMQGS EVVNVLKSLL TNLDEVKKER EGLENDLKSV BACU014639/1-677 ELELNAAIPS ANPAKTMQGS EVVNVLKSLL TNLDEVKKER EGLENDLKSV 651 700 ENSP00000411825/1-873 NFDMTSKFLT ALAQDGVINE EALSVTELDR VYGGLTTKVQ ESLKKQEGLL ENSBTAP00000023165/1-914 NFDMTSKFLT ALAQDGVINE EAISVTELDR IYGGLTTKVQ ESLKKQEDLL ENSTTRP00000003424/1-868 NFDMTSK-LT ALAQDGVINE EAISVTELDR IYGGLTTXXX XXXXXXXXXX bmy_20401T0/1-875 NFDMTSKFLT ALAQDGVINE EAISVTELDR IYGGLTAKVQ ESLKKQEGLL BACU014639/1-677 NFDMTSKFLT ALAQDGVINE EAISVTELDR IYGGLTAKVQ ESLKKQEGLL 701 750 ENSP00000411825/1-873 KNIQVSHQEF SKMKQSNNEA NLREEVLKNL ATAYDNFVEL VANLKEGTKF ENSBTAP00000023165/1-914 KNIQVSHQEF SKMKQSNNEA NLREEVLKNL AAAYDNFVEL VANLKEGTKF ENSTTRP00000003424/1-868 XXXXVSHQEF SKMKQSNNEA NLREEVLKNL ATAYDNFVEL VANLKEGTKF bmy_20401T0/1-875 KNIQVSHQEF SKMKQSNNEA NLREEVLKNL AAAYDNFVEL VANLKEGTKF BACU014639/1-677 KNIQVSHQEF SKMKQSNSEA NLREEVLKNL AVAYDNFVEL VANLKEGTKF 751 800 ENSP00000411825/1-873 YNELTEILVR FQNKCSDIVF ARKTERDELL KDLQQSIARE PSAPSIPTPA ENSBTAP00000023165/1-914 YNELTEILVR FQNKCSDIVF ARKTERDELL KDLQQSIARE PSAPSIPTPT ENSTTRP00000003424/1-868 YNELTEILIR FQNKCSDIVF ARKTERDELL KDLQQSIARE PSAPSIPTPA bmy_20401T0/1-875 YNELTEILIR FQNKCSDIVF ARKTERDELL KDLQQSIARE PSAPSIPTPA BACU014639/1-677 YNELTEILIR FQNKCSDIVF ARKTERDELL KDLQQSIARE PSAPSIPTPA 801 850 ENSP00000411825/1-873 YQSSPAGGHA PTPPTPAPRT MPPTKPQPPA RPPPPVLPAN RAPSAT---- ENSBTAP00000023165/1-914 YQSSPAGGHA PTPPTPAPRT MPPTKPQPPA RPPPPVLPAN RTPASA-PAA ENSTTRP00000003424/1-868 YQSSPAGGHT PMPPTPAPRT MPPTKPQPPA RPPPPVLPAN RTPATA---T bmy_20401T0/1-875 YQSSPAGGHM PTPPTPAPRT MPPTKPQPPA RPPPPVLPAN RTPPATAPAP BACU014639/1-677 YQSSPAGGHT PTPPTPAPRT MPPTKPQPPA RPPPPVLPAN RTPPAT---- 851 900 ENSP00000411825/1-873 ----APSPVG AGTAAPAPSQ TPGSAPPPQA QGPPYPTYPG YPGYCQMPMP ENSBTAP00000023165/1-914 ALAPAPAPAG SGTTVPAPSQ TPGSAPLPQA QGPPYPTYPG YPGYCQMPMP ENSTTRP00000003424/1-868 ALAPAPAPAS TGTTALAPSQ TPGSAPPLQA QGPPYPT--- YPGYCQMPMP bmy_20401T0/1-875 APAPAPAPAS TGTTAPAPSQ TPGSAPPLQA QGPPYPTYPG YPGYCQMPMP BACU014639/1-677 --APAPAPAS TGTTAPAPSQ TPGSAPALQA QGPPYPT--- YPGYCQMPMP 901 950 ENSP00000411825/1-873 MGYNPYAYGQ YNMPYPPVYH QSPGQAPYPG PQQPSYPFPQ PPQQSYYPQQ ENSBTAP00000023165/1-914 MGYNPYAYGQ YNMPYPPVYH QSPGQAPYPG PQQPSYPFPQ PPQQSYYPQQ ENSTTRP00000003424/1-868 MGYNPYAYGQ YNMPYPPVYH QSPGQAPYPG PQQPSYPFPQ PPQQPYYPQQ bmy_20401T0/1-875 MGYNPYAYGQ YNMPYPPVYH QSPGQAPYPG PQQPSYPFPQ PPQQPYYPQQ BACU014639/1-677 MGYNPYAYGQ YNMPYPPVYH QSPGQAPYPG PQQPSYPFPQ PPQQPYYPQQ