KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:20:04 2014  Check: 00 ..

 Name: ENSBTAP00000023167/1-226  Len:    242  Check:  1027  Weight:  1.00
 Name: ENSP00000372295/1-226     Len:    242  Check:  2627  Weight:  1.00
 Name: bmy_11029T0/1-242         Len:    242  Check:  8585  Weight:  1.00
 Name: BACU000170/1-242          Len:    242  Check:  7253  Weight:  1.00
 Name: ENSTTRP00000003504/1-226  Len:    242  Check:  1868  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000023167/1-226  ---------- ------MDWG GLHTILGGVN KHSTSIGKIW LTVLFIFRIM 
ENSP00000372295/1-226     ---------- ------MDWG TLQTILGGVN KHSTSIGKIW LTVLFIFRIM 
bmy_11029T0/1-242         MWCHFVFSSG NCPDEKMDWG TLQTILGGVN KHSTSIGKVW LTVIFIFRVM 
BACU000170/1-242          MWCHFVFSST NCPDKKMDWG TLQTILGGVN KHSTSIGKIW LTVIFIFRVM 
ENSTTRP00000003504/1-226  ---------- ------MDWG TLQTILGGVN KHSTSIGKIW LTVIFIFRVM 


                          51                                                 100
ENSBTAP00000023167/1-226  ILVVAAKEVW GDEQADFVCN TLQPGCKNVC YDHYFPISHI RLWALQLIFV 
ENSP00000372295/1-226     ILVVAAKEVW GDEQADFVCN TLQPGCKNVC YDHYFPISHI RLWALQLIFV 
bmy_11029T0/1-242         ILVVAAKEVW GDEQADFVCN TLQPGCKNVC YDHYFPVSHI RLWALQLIFV 
BACU000170/1-242          ILVVAAKEVW GDEQADFVCN TLQPGCKNVC YDHYFPVSHI RLWALQLIFV 
ENSTTRP00000003504/1-226  ILVVAAKEVW GDEQADFVCN TLQPGCKNVC YDHYFPVSHI RLWALQLIFV 


                          101                                                150
ENSBTAP00000023167/1-226  STPALLVAMH VAYYRHEKKR KFIRGEIKTE FKDIEEIKKQ KVRIEGSLWW 
ENSP00000372295/1-226     STPALLVAMH VAYRRHEKKR KFIKGEIKSE FKDIEEIKTQ KVRIEGSLWW 
bmy_11029T0/1-242         STPALLVAMH VAHYRHEKKR KFMKGEIKSE FKDIEEIKTQ KVRIEGSLWW 
BACU000170/1-242          STPALLVAMH VAHYRHEKKR KFMKGEIKSE FKDIEEIKSQ KVRIEGSLWW 
ENSTTRP00000003504/1-226  STPALLVAMH VAHYRHEKKR KFMKGEIKSE YKDIEEIKSQ KVRIEGSLWW 


                          151                                                200
ENSBTAP00000023167/1-226  TYTGSIFFRV IFEAAFMYVF YVMYDGFAMQ RLVKCNAWPC PNTVDCFVSR 
ENSP00000372295/1-226     TYTSSIFFRV IFEAAFMYVF YVMYDGFSMQ RLVKCNAWPC PNTVDCFVSR 
bmy_11029T0/1-242         TYTGSIFFRV IFEASFTYVF YAMYNGFSMK RLVQCSTWPC PNTVDCFVSR 
BACU000170/1-242          TYTGSIFFRI IFEASFTYVF YVMYDGFSMQ RLVKCNAWPC PNTVDCFVSR 
ENSTTRP00000003504/1-226  TYTGSIFFRV IFEAAFMYVF YVMYDGFAMQ RLVKCNAWPC PNTVDCFVSR 


                          201                                                250
ENSBTAP00000023167/1-226  PTEKTVFTVF MIAVSGICIL LNVTELCYLL IRFCSGKSKK PV 
ENSP00000372295/1-226     PTEKTVFTVF MIAVSGICIL LNVTELCYLL IRYCSGKSKK PV 
bmy_11029T0/1-242         PTEKTVFTVF MIAVSGICIL LNVTELCYLL IRYCSRKSKK PV 
BACU000170/1-242          PTEKTVFTVF MIAVSGICIL LNVTELCYLL IRYCSRKSKK PV 
ENSTTRP00000003504/1-226  PTEKTVFTVF MIAVSGICIL LNVTELCYLM IRYCSGKSKK PV