KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:08 2014 Check: 00 .. Name: ENSBTAP00000023197/1-796 Len: 832 Check: 3433 Weight: 1.00 Name: ENSP00000419446/1-819 Len: 832 Check: 6719 Weight: 1.00 Name: bmy_06091T0/1-492 Len: 832 Check: 7060 Weight: 1.00 Name: BACU007434/1-797 Len: 832 Check: 7066 Weight: 1.00 Name: ENSTTRP00000013634/1-819 Len: 832 Check: 9033 Weight: 1.00 // 1 50 ENSBTAP00000023197/1-796 ---------- -----MTFML G--------- -EGFQQTSHL SSYEIITPWK ENSP00000419446/1-819 MGSGARFPSG TLRVRWLLLL GLVGPVLGAA RPGFQQTSHL SSYEIITPWR bmy_06091T0/1-492 ---------- ---------- ---------- ---FQQTSHL SSYEIITPWR BACU007434/1-797 MGSGAGSPSG TLCFLWLLVF GLVSPALGGA RSGFQQTSHL SSYEIITPWR ENSTTRP00000013634/1-819 MGSGAGSPSG TLCFLWLLLF GLVSPALGGA RSGFQQTSHL SSYEIITPWR 51 100 ENSBTAP00000023197/1-796 LTRERREAPR PFSEQVSYVI QAEGKEHIIH LERNKDLLPK DFVVYTYNKE ENSP00000419446/1-819 LTRERREAPR PYSKQVSYVI QAEGKEHIIH LERNKDLLPE DFVVYTYNKE bmy_06091T0/1-492 LTRERREAPR PYSEQVSYVI QAEGKEHIIH LERNKDLLPK DFVVYTYSKE BACU007434/1-797 LTRERREAPR PYSEQVSYVI QAEGKEHIIH LERNKDLLPK DFVVYTYNKE ENSTTRP00000013634/1-819 LTRERREAPR PYSEQVSYVI QAEGKEHIIH LERNXXXXXX XXXXXXXXXX 101 150 ENSBTAP00000023197/1-796 GALISDHPSI QNHCHYRGYV EGTYDSSIAL SDCFGLRGLL HIENVSYGIE ENSP00000419446/1-819 GTLITDHPNI QNHCHYRGYV EGVHNSSIAL SDCFGLRGLL HLENASYGIE bmy_06091T0/1-492 GALISDYPDI QNHCHYRGYV EGVYNSSVAL SNCFGLRGLL HIENVSYGIE BACU007434/1-797 GALISDYPDI QNHCHYRGYV EGVYNSSIAL SNCFGLRGLL HIENVSYGIE ENSTTRP00000013634/1-819 XXXXXXXXXX XNHCHYRGYV EGVYNSSIAL SNCFGLRGLL HIENVSYGIE 151 200 ENSBTAP00000023197/1-796 PLQNSSHFEH IFYRMDDVHQ EPLKCGVSNK VMEEETTKDE EEEHPSITQL ENSP00000419446/1-819 PLQNSSHFEH IIYRMDDVYK EPLKCGVSNK DIEKETAKDE EEEPPSMTQL bmy_06091T0/1-492 PLQNSSHFEH IFYRMDDVHK EPVKCGVSNK DTEEETTKDE EEEPPSVTQL BACU007434/1-797 PLQNSSHFEH IFYRMDDVHK EPVKCGVSNK DIEEETTKDE EEEPPSVTQL ENSTTRP00000013634/1-819 PLQNSSHFEH IFYRMDDVHK EPVKCGVSNK DTEEETTKDE EEEPPSVTQL 201 250 ENSBTAP00000023197/1-796 LRRKRDILPQ TRYVELFIVV EKEKYDNMGK NQTAVREEMI SLANYLDSMY ENSP00000419446/1-819 LRRRRAVLPQ TRYVELFIVV DKERYDMMGR NQTAVREEMI LLANYLDSMY bmy_06091T0/1-492 LRRRRALLPQ TRYVELFIVV DKERYDMMGR NQTAVREEMI LLANYLDS-- BACU007434/1-797 LR-------- ---------- ----YDMMGR NQTAVREEMI LLANYLDSMY ENSTTRP00000013634/1-819 LRRRRAVLPQ TRYVELFIVV DKERYDMMGR NQTAVREEMI LLANYLDSMY 251 300 ENSBTAP00000023197/1-796 IMLNIRIVLV GLEIWTNENL ISMAGGAGDV LSNFVQWREK FLITRRRHDS ENSP00000419446/1-819 IMLNIRIVLV GLEIWTNGNL INIVGGAGDV LGNFVQWREK FLITRRRHDS bmy_06091T0/1-492 ---------- GLPI--SLRL PKEIGAMC-T FSSPSTFYNF YLFSSFR--- BACU007434/1-797 IMLNIRIVLV GLEIWTNGNL INIIGGAGDV LGNFVQWREK FLITRRRHDS ENSTTRP00000013634/1-819 IMLNIRIVLV GLEIWTNGNL INIIGGAGDV LGNFVQWREK FLITRRRHDS 301 350 ENSBTAP00000023197/1-796 AQLILKRGFG GTAGMAFVGT VCSRSHAGGI NV-------- ---FGQIPVE ENSP00000419446/1-819 AQLVLKKGFG GTAGMAFVGT VCSRSHAGGI NV-------- ---FGQITVE bmy_06091T0/1-492 -----KKGFG GTAGMAFVGT VCSRSHAGGI NVKPNEYLPV FGQFGQITVE BACU007434/1-797 AQLVLKKGFG GTAGMAFVGT VCSRSHAGGI NV-------- ---FGQITVE ENSTTRP00000013634/1-819 AQLVLKKGFG GTAGMAFVGT VCSRSHAGGI NV-------- ---FGQITVE 351 400 ENSBTAP00000023197/1-796 KFASIVAHEL GHNLGMSHDD GRGCHCPVKS CIMNSGASGS KNFSSCSADD ENSP00000419446/1-819 TFASIVAHEL GHNLGMNHDD GRDCSCGAKS CIMNSGASGS RNFSSCSAED bmy_06091T0/1-492 TFASIVAHEL GHNLGMNHDD GRDCYCGAKS CIMNSGASGS RNFSTCSAED BACU007434/1-797 TFASIVAHEL GHNLGMNHDD GRDCYCGAKS CIMNSGASGS RNFSTCSAED ENSTTRP00000013634/1-819 TFASIVAHEL GHNLGMNHDD GRDCYCGAKS CIMNSGASGS RNFSTCSAED 401 450 ENSBTAP00000023197/1-796 FEKLTLNKGG NCLLNIPKGD EAYSAPSCGN KLVDPGEECD CGSPKECELD ENSP00000419446/1-819 FEKLTLNKGG NCLLNIPKPD EAYSAPSCGN KLVDAGEECD CGTPKECELD bmy_06091T0/1-492 FEKLTLNKGG NCLLNIPKPD EAYSAPFCGN KLVDPGEECD CGTPKECELD BACU007434/1-797 FEKLTLNKGG NCLLNIPKPD EAYSAPFCGN KLVDPGEECD CGTPKECELD ENSTTRP00000013634/1-819 FEKLTLNKGG NCLLNIPKPD EAYSAPFCGN KLVDNGEECD CGTPKECELD 451 500 ENSBTAP00000023197/1-796 PCCEGKTCKL KSFAECAYGA CCQDCRFRPG GTLCRGKTNE CDVPEYCNGS ENSP00000419446/1-819 PCCEGSTCKL KSFAECAYGD CCKDCRFLPG GTLCRGKTSE CDVPEYCNGS bmy_06091T0/1-492 PCCEGSTCKL KSSAECAYGD CCQDCWFLPG GTLCRGKTNE CDVPEYCNGS BACU007434/1-797 PCCEGSTCKL KSSAECAYGD CCQDCWFLPG GTLCRGKTNE CDVPEYCNGS ENSTTRP00000013634/1-819 PCCEGSTCKL KSSAECAYGD CCQDCWFLPG GTLCRGKTNE CDVPEYCNGS 501 550 ENSBTAP00000023197/1-796 SQFCQPDVFI QNGYPCQNNK AYCYNGMCQY YDAQCQVIFG SKAKAAPKEC ENSP00000419446/1-819 SQFCQPDVFI QNGYPCQNNK AYCYNGMCQY YDAQCQVIFG SKAKAAPKDC bmy_06091T0/1-492 SQFCQPDVFI QNGYPCQNNK AYCYNGMCQY YDAQCQVIFG SNI------- BACU007434/1-797 SQFCQPDVFI QNGYPCQNNK AYCYNGMCQY YDAQCQVIFG SKAKAAPRDC ENSTTRP00000013634/1-819 SQFCQPDVFI QNGYPCQNNR AYCYNGMCQY YDAQCQVIFG SKAKAAPRDC 551 600 ENSBTAP00000023197/1-796 FLDVNSKGDR FGNCGFSGHE YKKCAIGNAL CGKLQCENVQ QLPVFGVVPA ENSP00000419446/1-819 FIEVNSKGDR FGNCGFSGNE YKKCATGNAL CGKLQCENVQ EIPVFGIVPA bmy_06091T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU007434/1-797 FIDVNSKGDR FGNCGFSGNE YKKCATGNAL CGKLQCENVQ EMPVFGIVPA ENSTTRP00000013634/1-819 FIDVNSKGDR FGNCGFSGNE YKKCATGNAL CGKLQCENVQ EMPVFGIVPA 601 650 ENSBTAP00000023197/1-796 IIQTPGKGTK CWGVDFQLGS DVPDPGMVNE GTSCDVGKIC RNFACVNVSV ENSP00000419446/1-819 IIQTPSRGTK CWGVDFQLGS DVPDPGMVNE GTKCGAGKIC RNFQCVDASV bmy_06091T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU007434/1-797 IIQTPGRGTK CWGVDFQLGS DVPDPGMVNE GTRCGVGKIC RNFQCVNASV ENSTTRP00000013634/1-819 IIQTPGRGTK CWGVDFQLGS DVPDPGMVNE GTRCGVGKIC RNFQCVNASV 651 700 ENSBTAP00000023197/1-796 LNYDCDIQQK CHGHGVCNSN KNCHCDNGWA PPNCETKGYG GSVDSGPTYN ENSP00000419446/1-819 LNYDCDVQKK CHGHGVCNSN KNCHCENGWA PPNCETKGYG GSVDSGPTYN bmy_06091T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU007434/1-797 LNYDCDIQKK CHGHGVCNSN KNCHCDSGWA PPYCEATGYG GSVDSGPAYN ENSTTRP00000013634/1-819 LNYDCDIQKK CHGHGVCNSN KNCHCDSGWA PPYCEATGYG GSVDSGPAYN 701 750 ENSBTAP00000023197/1-796 ENNAALRDGL LVFFFLILPL TVLAVFVFIK RDQLRKSCCR RKRSQTNESG ENSP00000419446/1-819 EMNTALRDGL LVFFFLIVPL IVCAIFIFIK RDQLWRSYFR KKRSQTYESD bmy_06091T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU007434/1-797 EKNTALRDGL LVFFFVIIPL TVLAAFVFIK RDQLQKSYCR RKRSQTYESD ENSTTRP00000013634/1-819 EKNTALRDGL LVFFFVIVPL TALAAFVFIK RDQLQKSYCR RKRSQTYESD 751 800 ENSBTAP00000023197/1-796 GKNQAKDSRQ PASVPRPVSS VIPPRNVPVQ TNRFPVPTYG ARQPQQYPSR ENSP00000419446/1-819 GKNQANPSRQ PGSVPRHVSP VTPPREVPIY ANRFAVPTYA AKQPQQFPSR bmy_06091T0/1-492 ---------- ---------- ---------- ---------- ---------- BACU007434/1-797 GKNQAKVSRQ PVSVPGHASS VAPPREVPIY ANRFPVPTYA AKQPQQFPSR ENSTTRP00000013634/1-819 GKNQAKVSRQ PVSVPGHASS VAPPREVXXX XXXXXXXXXX XXXXXXXXXX 801 850 ENSBTAP00000023197/1-796 PPPPQPKESF QGNLVPARPA PPPPPPLYSS LT ENSP00000419446/1-819 PPPPQPKVSS QGNLIPARPA --PAPPLYSS LT bmy_06091T0/1-492 ---------- ---------- -------FRE LS BACU007434/1-797 PPPPQPKVSS QGNLIPARPA --PPPPLYSS LT ENSTTRP00000013634/1-819 PPPPQPKVSS QGNLIPARPA --PPPPLYSS LT