KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:09 2014 Check: 00 .. Name: ENSTTRP00000013300/1-342 Len: 419 Check: 9054 Weight: 1.00 Name: bmy_08392T0/1-302 Len: 419 Check: 3466 Weight: 1.00 Name: BACU002868/1-281 Len: 419 Check: 9617 Weight: 1.00 Name: ENSP00000309036/1-332 Len: 419 Check: 3710 Weight: 1.00 Name: ENSBTAP00000023198/1-270 Len: 419 Check: 9636 Weight: 1.00 // 1 50 ENSTTRP00000013300/1-342 DVLG------ ---------- ---------- -----RGNGD TGADQHLSGM bmy_08392T0/1-302 GPTGALGGGG HEAAAAGLGP GRLQPWAARR GLGPAPGSGS RAGGRPLTMP BACU002868/1-281 ---------- ---------- ---------- ---------- --------MP ENSP00000309036/1-332 ---------- ---------- ---------- ---------- --------MP ENSBTAP00000023198/1-270 ---------- ---------- ---------- ---------- --------MP 51 100 ENSTTRP00000013300/1-342 GSLGWQDCPP VLAERKREGL CKIAGASVGD GSQMWG-SVV PFPTGFVETR bmy_08392T0/1-302 GKHQHFQEPE V-------GC C--------G KYFLFGFNIV FWVLGALFLA BACU002868/1-281 GKHQHFQEPE V-------GC C--------G KYFLFGFNIV FWVLGALFLA ENSP00000309036/1-332 GKHQHFQEPE V-------GC C--------G KYFLFGFNIV FWVLGALFLA ENSBTAP00000023198/1-270 GKHQHFQEPE V-------GC C--------G KYFLFGFNIV FWVLGALFLA 101 150 ENSTTRP00000013300/1-342 TPQVAWRKPQ SLGHHPCPPF LFSSSLRLGD KLRSPFTPPS PHQPGGWAQA bmy_08392T0/1-302 IGLWAWGEKG VLSNISALTD L--------- ---------- ----GGLDPV BACU002868/1-281 IGLWAWGEKG VLSNISALTD L--------- ---------- ----GGLDPV ENSP00000309036/1-332 IGLWAWGEKG VLSNISALTD L--------- ---------- ----GGLDPV ENSBTAP00000023198/1-270 IGLWAWSEKG VLSNISALTD L--------- ---------- ----GGLDPV 151 200 ENSTTRP00000013300/1-342 W--PVCGEL- -----PACLA ASAPSRPALS --SCSLGLS- --PNRMGLLD bmy_08392T0/1-302 WLFVVVGGIM SVLGFAGCIG ALRENTFLLK FFSVFLGLIF FLELATGILA BACU002868/1-281 WLFVVVGGIM SVLGFAGCIG ALRENTFLLK FFSVFLGLIF FLELATGILA ENSP00000309036/1-332 WLFVVVGGVM SVLGFAGCIG ALRENTFLLK FFSVFLGLIF FLELATGILA ENSBTAP00000023198/1-270 WLFVVVGGVM SVLGFAGCIG ALRENTFLLK FFSVFLGLIF FLELATGILA 201 250 ENSTTRP00000013300/1-342 WAWLTW---- ---------- ---------- --GSSPTRWS CCGARGPNDW bmy_08392T0/1-302 FVFKDWIRDQ LNLFINNNVK AYRDDIDLQN LIDFAQEYWS CCGARGPNDW BACU002868/1-281 FVFKDWIRDQ LNLFINNNVK AYRDDIDLQN LIDFAQEYWS CCGARGPNDW ENSP00000309036/1-332 FVFKDWIRDQ LNLFINNNVK AYRDDIDLQN LIDFAQEYWS CCGARGPNDW ENSBTAP00000023198/1-270 FVFKDWIRDQ LNLFINNNVK AYRDDIDLQN LIDFAQEYWS CCGARGPNDW 251 300 ENSTTRP00000013300/1-342 NLNIYFNCTD VNPSRERCGV PFSCCVRDPV EDVLNTQCGY DVRLKL---E bmy_08392T0/1-302 NLNIYFNCTD VNPSRERCGV PFSCCVRDPV ---------- ---------E BACU002868/1-281 NLNIYFNCTD VNPSRERCGV PFSCCVRDPV EDVLNTQCGY DVRLKL---E ENSP00000309036/1-332 NLNIYFNCTD LNPSRERCGV PFSCCVRDPA EDVLNTQCGY DVRLKLVRGE ENSBTAP00000023198/1-270 NLNIYFNCTD LNPSRERCGV PFSCCVRDPA EDVLNTQCGY DVRLKL---E 301 350 ENSTTRP00000013300/1-342 LEQQGFIHTK GCVGQFEKWL QDNLIIVAGI FVGIALLQIF GICLAQNLVS bmy_08392T0/1-302 LEQQGFIHTK GCVGQFEKWL QDNLIIVAGI FVGIALLQIF GICLAQNLVS BACU002868/1-281 LEQQGFIHTK GCVGQFEKWL QDNLIIVAGI FVGIALLQIF GICLAQNLVS ENSP00000309036/1-332 LEQQGFIHTK GCVGQFEKWL QDNLIVVAGV FMGIALLQIF GICLAQNLVS ENSBTAP00000023198/1-270 LEQQGFIHTK GCVGQFEKWL QDNLIVVAGV FVGIALLQIF GICLAQNLVS 351 400 ENSTTRP00000013300/1-342 DIKAVKANWI KHDDDLENHW LPPGILKVLS AAGSQQSSPS WA---SLEPS bmy_08392T0/1-302 DIKAVKANW- ---------- ---------- ---------- ---------- BACU002868/1-281 DIKAVKANWI KHDDGYRLLK ---------- ---------- ---------- ENSP00000309036/1-332 DIKAVKANWS KWNDDFENHW LTPTISEVLS TAGPQQNSLT GAPGPAPPSR ENSBTAP00000023198/1-270 DIKAVKANW- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000013300/1-342 QCVFGLGSIY FETTCKTWC bmy_08392T0/1-302 ---------- --------- BACU002868/1-281 ---------- --------- ENSP00000309036/1-332 HVFFGLGGLY PEPTFKNW- ENSBTAP00000023198/1-270 ---------- ---------