KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:09 2014 Check: 00 .. Name: ENSP00000352561/1-508 Len: 568 Check: 4091 Weight: 1.00 Name: ENSBTAP00000023201/1-528 Len: 568 Check: 9592 Weight: 1.00 Name: BACU016848/1-463 Len: 568 Check: 4303 Weight: 1.00 Name: ENSTTRP00000006872/1-486 Len: 568 Check: 3478 Weight: 1.00 Name: bmy_06983T0/1-487 Len: 568 Check: 5839 Weight: 1.00 // 1 50 ENSP00000352561/1-508 MQFSGEKISG QRDLQKSKMR FTFTSRCLAL FLLLNHPTPI LPAFSNQTY- ENSBTAP00000023201/1-528 ---------- --------MK FTLTRWCLTL FIFLNRPLPV LPTSSDSTYS BACU016848/1-463 ---------- -------KSG YLL---CLLL NF-------- ---------- ENSTTRP00000006872/1-486 ---------- --------MR FTLTRWCLTL FFFLNRPIPV LPATSEVTHP bmy_06983T0/1-487 MQVLEDR--- ---LQKPKMK FTLTRWCLTL FIFLNRPIPV LPATSEVTHP 51 100 ENSP00000352561/1-508 PTIEPKPFLY VVGRKKMMDA QYKCYDRMQQ LPAYQGEGPY CNRTWDGWLC ENSBTAP00000023201/1-528 PTLEPEPFLF LVGKQKLLQA QHKCFDRMQK LPPYQGEGLY CNRTWDGWAC BACU016848/1-463 ---------- -----TLIKL KQSC------ --------LY CNRTWDGWSC ENSTTRP00000006872/1-486 PTIEPEPFLY LLGKQRLLEA QHRCYDRMQK LPPYQGEGLY CNRTWDGWSC bmy_06983T0/1-487 PTIEPEPFLY LLGKQRLLEA QHRCYDRMQK LPPYQGE--- ---------- 101 150 ENSP00000352561/1-508 WDDTPAGVLS YQFCPDYFPD FDPSEKVTKY CDEKGVWFKH PENNRTWSNY ENSBTAP00000023201/1-528 WDDTPAGTLA EQHCPGYFPD FDVEEKVTKY CEEDGVWYTH PESNISWSNY BACU016848/1-463 WDDTPAGVLA QQHCPDYFPD FDVAEKVTKY CEEDGVWYTH PDSNISWSNY ENSTTRP00000006872/1-486 WDDTPAGVLA EQHCPDYFPD FDVAEKVTKY CEEDGLWYTH PGSNISWSNY bmy_06983T0/1-487 ---------- ---------- ----EKVTKY CEEDGLWYTH PDSNISWSNY 151 200 ENSP00000352561/1-508 TMCNAFTPEK LKNAYVLYYL AIVGHSLSIF TLVISLGIFV FFRKLTTIFP ENSBTAP00000023201/1-528 TMCNAFTPEK MQSAYILYYL AIVGHSMSMV TLVISLVIFM RVR------- BACU016848/1-463 TMCNAFTPEK MQNAYILYYL AIVGHSMSMF TLVISLAIFV LVR------- ENSTTRP00000006872/1-486 TMCNAFTPEK MQNAYILYYL AIVGHSMSMF TLVISLAIFM LVRLTTIFPL bmy_06983T0/1-487 TMCNAFTPEK MQNAYILYYL AIVGHSMSMF TLVISLAIFV LVR------- 201 250 ENSP00000352561/1-508 LNWKYRKALS LGCQRVTLHK NMFLTYILNS MIIIIHLVEV VPNGELVRRD ENSBTAP00000023201/1-528 ---------S LSCQRVTLHK NMFLTYVLNS IIIIIHLVEV VPNGELVKRD BACU016848/1-463 ---------S LKCQRVTLHK NMFLTYVLNS IIIIIHLVEV VPNGELVKRD ENSTTRP00000006872/1-486 I--KYRKALS LKCQRVTLHK NMFLTYVLNS IIIIIHLVEV VPNGELVKRD bmy_06983T0/1-487 ---------S LKCQRVTLHK NMFLTYVLNS IIIIIHLVEV VPNGELVKRD 251 300 ENSP00000352561/1-508 PVSCKILHFF HQYMMACNYF WMLCEGIYLH TLIVVAVFTE KQRLRWYYLL ENSBTAP00000023201/1-528 PPMCKVLHFF HQYMMSCNYF WMLCEGLYLH TLIVVSVFAE GQRMWWYYLL BACU016848/1-463 PPICKILHFF HQYMMSCNYF WMLCEGVYLH TLIVVSVFAE GQRMWWYYVL ENSTTRP00000006872/1-486 PPICKILHFF HQYMMSCNYF WMLCEGVYLH TLIVVSVFAE RQRMWWYYV- bmy_06983T0/1-487 PPICKILHFF HQYMMSCNYF WMLCEGVYLH TLIVVSVFAE GQRMWWYHVL 301 350 ENSP00000352561/1-508 GWGFPLVPTT IHAITRAVYF NDNCWLSVET HLLYIIHGPV MAALVVNFFF ENSBTAP00000023201/1-528 GWGLPLLPST AHAIARALLF NDNCWLSVDT NLLYIIHGPV MGALVLNFFF BACU016848/1-463 GWGLPLVPTT AHAIARALLF NDNCWLSVDT NLLYIIHGPV MGALVINFFF ENSTTRP00000006872/1-486 GWGLPLVPTT AHAIARALLF NDNCWLSVDT NLLYIIHGPV MGALVINFFF bmy_06983T0/1-487 GWGLPLVPTT AHAIARALLF NDNCWLSVDT NLLYIIHGPV MGALVINFFF 351 400 ENSP00000352561/1-508 LLNIVRVLVT KMRETHEAES HMYLKAVKAT MILVPLLGIQ FVVFPWRPSN ENSBTAP00000023201/1-528 LLNIIRVLVK KIKESQE-DS YIYLKAVRAT LILVPLLGVQ FVILPWRPSH BACU016848/1-463 LLNIVRVLVK KMKESQEEES HMYLKAVRAT LILVPLLGVQ FVVLPWRPSH ENSTTRP00000006872/1-486 LLNIVRVLVK KMKESQEEES HMYLKAVRAT LILVPLLGVQ FVVLPWRPSH bmy_06983T0/1-487 LLNIVRVLVK KMKESQEEES HMYLKAVRAT LILVPLLGVQ FVVLPWRPSH 401 450 ENSP00000352561/1-508 KMLGKIYDYV MHSLIHFQGF FVATIYCFCN NEVQTTVKRQ WAQFKIQWNQ ENSBTAP00000023201/1-528 PVLGKIYDFV MHSLIHFQGF FVAIIYCFCN HEVQAALKRQ WNQYQ---AR BACU016848/1-463 PVLGRIYDYV MHSLIHFQGF FVAIIYCFCN HEVQAALKRQ WNQYQ---AQ ENSTTRP00000006872/1-486 PVLGRIYDYV MHSLIHFQGL FVAVIYCFCN HEVQAALKRQ WNQYQ---AQ bmy_06983T0/1-487 PVLGRIYDYV MHSLIHFQGF FVAVIYCFCN HEVQAALKRQ WNQYQ---AQ 451 500 ENSP00000352561/1-508 RW-GRRPSNR SARAAAAAAE AGD------- IPIYICHQEL RNEPANNQGE ENSBTAP00000023201/1-528 RWNGRRRAHR AANAAAATAA AAAALAETP- -PIYICHQEP QNEPADNLGE BACU016848/1-463 RWSGRRRTNR AANAAAATAA AAAALAEAPQ MPVYICHQEP RNEPTNNLGE ENSTTRP00000006872/1-486 RWSGRRRANR AANAAAATAA AAA------- MPVYICHQEP RNEPTNNLGE bmy_06983T0/1-487 RWSGRRRANR AANAAAATAA AAAALAEAPQ MPVYICHQEP RNEPTNNLGE 501 550 ENSP00000352561/1-508 ESAEIIP--- ---------- ---------- ---------- ---------- ENSBTAP00000023201/1-528 EAAEVIPMEG GEVISMKGAE VIAVEGAAEV IAVEGAAEVI AVEGAAEVIT BACU016848/1-463 EGAEVTAMEG AEVITMEGAE VIAMEG---- ---------- -----AEVTV ENSTTRP00000006872/1-486 EGAEVTA--- ---------- ---------- ---------- ---------- bmy_06983T0/1-487 EGAEVTAMEG AEVITMEGAE VIAMEG---- ---------- -----AEVIV 551 600 ENSP00000352561/1-508 --------LN IIEQESSA ENSBTAP00000023201/1-528 VEGAEVVAME IIEQESSA BACU016848/1-463 MEGAEVIAME IIEQESSA ENSTTRP00000006872/1-486 --------ME IIEQESSA bmy_06983T0/1-487 MEGAEVIAME IIEQESSA