KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:12 2014 Check: 00 .. Name: BACU017933/1-1216 Len: 1386 Check: 1478 Weight: 1.00 Name: ENSTTRP00000014856/1-1127 Len: 1386 Check: 3425 Weight: 1.00 Name: ENSP00000261917/1-1203 Len: 1386 Check: 6797 Weight: 1.00 Name: bmy_19592T0/1-930 Len: 1386 Check: 4687 Weight: 1.00 Name: ENSBTAP00000023219/1-1200 Len: 1386 Check: 3624 Weight: 1.00 // 1 50 BACU017933/1-1216 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014856/1-1127 MDKLPPSMRK RLYSLPQQVG AKAWIMDEEE DAEEEGAGGR QDPSRRSIRL ENSP00000261917/1-1203 MDKLPPSMRK RLYSLPQQVG AKAWIMDEEE DAEEEGAGGR QDPSRRSIRL bmy_19592T0/1-930 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 MDKLPPSMRK RLYSLPQQVG AKAWIMDEEE DAEEEGAGGR QDPSRRSIRL 51 100 BACU017933/1-1216 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014856/1-1127 RPLPSPSPSA AAGGTEPRGA ALGAADSEGS TRGAGKSSTN GDCRRFRGSL ENSP00000261917/1-1203 RPLPSPSPSA AAGGTESRSS ALGAADSEGP ARGAGKSSTN GDCRRFRGSL bmy_19592T0/1-930 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 RPLPSPSPSA AAGGTEPRGA AHGAADGEGS ARGAGKSSTN GDCRRFRGSL 101 150 BACU017933/1-1216 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014856/1-1127 ASLGSRGGGG ARSGGGTVHG HLHDSAEERR LFAEGDA-PG EDRTXXXXXX ENSP00000261917/1-1203 ASLGSRGGGS GGTGSGSSHG HLHDSAEERR LIAEGDASPG EDRTPPGLAA bmy_19592T0/1-930 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 ASLGSRGGGG AGAGGGSSHG HLHDSAEERR LIAEGDASPG EDRTPPGLAA 151 200 BACU017933/1-1216 ---------- -------PPA QQPPQPVPAS CEQPSVDTAI KVEGGAAAGD ENSTTRP00000014856/1-1127 XXXXXXXXXX XXXX--XXLP QQPPQPVPAS CEQPSVDTAI KVEGGAAAGD ENSP00000261917/1-1203 EPERPGASAQ PAAS--PPPP QQPPQPASAS CEQPSVDTAI KVEGGAAAGD bmy_19592T0/1-930 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 EPERSGASAQ PAASPPPPPP QQPPQPVPAS CEQTSVDTAI KVEGGAAAGD 201 250 BACU017933/1-1216 QILPEAEVRL GQAGFMQRQF GAMLQPGVNK FSLRMFGSQK AVEREQERVK ENSTTRP00000014856/1-1127 QILPEAEVRL GQAGFMQRQF GAMLQPGVNK FSLRMFGSQK AVEREQERVK ENSP00000261917/1-1203 QILPEAEVRL GQAGFMQRQF GAMLQPGVNK FSLRMFGSQK AVEREQERVK bmy_19592T0/1-930 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 QILPEAEVRL GQAGFMQRQF GAMLQPGVNK FSLRMFGSQK AVEREQERVK 251 300 BACU017933/1-1216 SAGFWIIHPY SDFRFYWDLT MLLLMVGNLI IIPVGITFFK DENTTPWIVF ENSTTRP00000014856/1-1127 SVGFWIIHPY SDFRFYWDLT MLLLMVGNLI IIPVGITFFK DENTTPWIVF ENSP00000261917/1-1203 SAGFWIIHPY SDFRFYWDLT MLLLMVGNLI IIPVGITFFK DENTTPWIVF bmy_19592T0/1-930 ---------- ---------- MLLLMVGNLI IIPVGITFFK DENTTPWIVF ENSBTAP00000023219/1-1200 SAGFWIIHPY SDFRFYWDLT MLLLMVGNLI IIPVGITFFK DENTTPWIVF 301 350 BACU017933/1-1216 NVVSDTFFLI DLVLNFRTGI VVEDNTEIIL DPQRIKMKYL KSWFVVDFIS ENSTTRP00000014856/1-1127 NVVSDTFFLI DLVLNFRTGI VVEDNTEIIL DPQRIKMKYL KSWFVVDFIS ENSP00000261917/1-1203 NVVSDTFFLI DLVLNFRTGI VVEDNTEIIL DPQRIKMKYL KSWFMVDFIS bmy_19592T0/1-930 NVVSDTFFLI DLVLNFRTGI VVEDNTEIIL DPQRIKMKYL KSWFVVDFIS ENSBTAP00000023219/1-1200 NVVSDTFFLI DLVLNFRTGI VVEDNTEIIL DPQRIKMKYL KSWFVVDFIS 351 400 BACU017933/1-1216 SIPVDYIFLI VETRIDSEVY KTARALRIVR FTKILSLLRL LRLSRLIRYI ENSTTRP00000014856/1-1127 SIPVDYIFLI VETRIDSEVY KTARALRIVR FTKILSLLRL LRLSRLIRYI ENSP00000261917/1-1203 SIPVDYIFLI VETRIDSEVY KTARALRIVR FTKILSLLRL LRLSRLIRYI bmy_19592T0/1-930 SIPVDYIFLI VETRIDSEVY KTARALRIVR FTKILSLLRL LRLSRLIRYI ENSBTAP00000023219/1-1200 SIPVDYIFLI VETRIDSEVY KTARALRIVR FTKILSLLRL LRLSRLIRYI 401 450 BACU017933/1-1216 HQWEEIFHMT YDLASAVVRI VNLIGMMLLL CHWDGCLQFL VPMLQDFPDD ENSTTRP00000014856/1-1127 HQWEEIFHMT YDLASAVVRI VNLIGMMLLL CHWDGCLQFL VPMLQD-PDD ENSP00000261917/1-1203 HQWEEIFHMT YDLASAVVRI VNLIGMMLLL CHWDGCLQFL VPMLQDFPDD bmy_19592T0/1-930 HQWEEIFHMT YDLASAVVRI VNLIGMMLLL CHWDGCLQFL VPMLQDFPDD ENSBTAP00000023219/1-1200 HQWEEIFHMT YDLASAVVRI VNLIGMMLLL CHWDGCLQFL VPMLQDFPDD 451 500 BACU017933/1-1216 CWVSINNMVN NSWGKQYSYA LFKAMSHMLC IGYGRQAPVG MSDVWLTMLS ENSTTRP00000014856/1-1127 XXXXXXXXXN NSWGRQYSYA LFKAMSHMLC IGYGRQAPVG MSDVWLTMLS ENSP00000261917/1-1203 CWVSINNMVN NSWGKQYSYA LFKAMSHMLC IGYGRQAPVG MSDVWLTMLS bmy_19592T0/1-930 CWVSINNMVN NSWGKQYSYA LFKAMSHMLC IGYGRQAPVG MSDVWLTMLS ENSBTAP00000023219/1-1200 CWVSINNMVN NSWGKQYSYA LFKAMSHMLC IGYGRQAPVG MSDVWLTMLS 501 550 BACU017933/1-1216 MIVGATCYAM FIGHATALIQ SLDSSRRQYQ EKYKQVEQYM SFHKLPPDTR ENSTTRP00000014856/1-1127 MIVGATCYAM FIGHATALIQ SLDSSRRQYQ EKXXXXXXXX XXXXXXXXXX ENSP00000261917/1-1203 MIVGATCYAM FIGHATALIQ SLDSSRRQYQ EKYKQVEQYM SFHKLPPDTR bmy_19592T0/1-930 MIVGATCYAM FIGHATALIQ SLDSSRRQYQ EKYKQVEQYM SFHKLPPDTR ENSBTAP00000023219/1-1200 MIVGATCYAM FIGHATALIQ SLDSSRRQYQ EKYKQVEQYM SFHKLPPDTR 551 600 BACU017933/1-1216 QRIHDYYEHR YQGKMFDEES ILGELSEPLR EEIINFNCRK LVASMPLFAN ENSTTRP00000014856/1-1127 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261917/1-1203 QRIHDYYEHR YQGKMFDEES ILGELSEPLR EEIINFNCRK LVASMPLFAN bmy_19592T0/1-930 QRIHDYYEHR YQGKMFDEES ILGELSEPLR EEIINFNCRK LVASMPLFAN ENSBTAP00000023219/1-1200 QRIHDYYEHR YQGKMFDEES ILGELSEPLR EEIINFNCRK LVASMPLFAN 601 650 BACU017933/1-1216 ADPNFVTSML TKLRFEVFQP GDYIIREGTI GKKMYFIQHG VVSVLTKGNK ENSTTRP00000014856/1-1127 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000261917/1-1203 ADPNFVTSML TKLRFEVFQP GDYIIREGTI GKKMYFIQHG VVSVLTKGNK bmy_19592T0/1-930 ADPNFVTSML TKLRFEVFQP GDYIIREGTI GKKMYFIQHG VVSVLTKGNK ENSBTAP00000023219/1-1200 ADPNFVTSML TKLRFEVFQP GDYIIREGTI GKKMYFIQHG VVSVLTKGNK 651 700 BACU017933/1-1216 ETKLADGSYF GGEAAKGPWG DRAMGWRDTE DDIADPHATA WRWVSVSPGQ ENSTTRP00000014856/1-1127 XXXXXXXXXX X--------- ---------- ---------- ---------- ENSP00000261917/1-1203 ETKLADGSYF G--------- ---------- ---------- ---------- bmy_19592T0/1-930 ETKLADGSYF G--------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 ETKLADGSYF G--------- ---------- ---------- ---------- 701 750 BACU017933/1-1216 GWSQRRERQS VTHLVGGWHP RCGHGLGVGP CEPVQLLSQT AGSQVRVGWG ENSTTRP00000014856/1-1127 ---------- ---------- ---------- --XICLLTR- ---------- ENSP00000261917/1-1203 ---------- ---------- ---------- --EICLLTR- ---------- bmy_19592T0/1-930 ---------- ---------- ---------- --EICLLTR- ---------- ENSBTAP00000023219/1-1200 ---------- ---------- ---------- --EICLLTR- ---------- 751 800 BACU017933/1-1216 ILWSLPGTPP PHPLXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 ---------- ---------- ---------- ---------- ---------- ENSP00000261917/1-1203 ---------- ---------- ---------- ---------- ---------- bmy_19592T0/1-930 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023219/1-1200 ---------- ---------- ---------- ---------- ---------- 801 850 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 ---------- ---------- ---------- ---------- --------GR ENSP00000261917/1-1203 ---------- ---------- ---------- ---------- --------GR bmy_19592T0/1-930 ---------- ---------- ---------- ---------- --------GR ENSBTAP00000023219/1-1200 ---------- ---------- ---------- ---------- --------GR 851 900 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 RTASVRADTY CRLYSLSVDN FNEVLEEYPM MRRAFETVAL DRLDRIGKKN ENSP00000261917/1-1203 RTASVRADTY CRLYSLSVDN FNEVLEEYPM MRRAFETVAL DRLDRIGKKN bmy_19592T0/1-930 RTASVRADTY CRLYSLSVDN FNEVLEEYPM MRRAFETVAL DRLDRIGKKN ENSBTAP00000023219/1-1200 RTASVRADTY CRLYSLSVDN FNEVLEEYPM MRRAFETVAL DRLDRIGKKN 901 950 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 SILLHKVQHD LNSGVFNYQE NEIIQQIVQH DREMAHCAHR VQAAASATPT ENSP00000261917/1-1203 SILLHKVQHD LNSGVFNYQE NEIIQQIVQH DREMAHCAHR VQAAASATPT bmy_19592T0/1-930 SILLHKVQHD LNSGVFNYQE NEIIQQIVQH DREMAHCAHR VQAAASATPT ENSBTAP00000023219/1-1200 SILLHKVQHD LNSGVFNYQE NEIIQQIVQH DREMAHCAHR VQAAASATPT 951 1000 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 PTPVIWTPLI QAPLQAAAAT TSVAIALTHH PRLPAAIFRP PPGPGLGGLG ENSP00000261917/1-1203 PTPVIWTPLI QAPLQAAAAT TSVAIALTHH PRLPAAIFRP PPGSGLGNLG bmy_19592T0/1-930 PTPVIWTPLI QAPLQAAAAT TSVAIALTHH PRLPAAIFRP PPGPGLGGLG ENSBTAP00000023219/1-1200 PTPVIWTPLI QAPLQAAAAT TSVAIALTHH PRLPAAIFRP PPGPGLGGLG 1001 1050 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 AGQTPRHLKR LQSLIPSALG SASPASSPSQ VDTPSSSSFH IQQLAGFSAP ENSP00000261917/1-1203 AGQTPRHLKR LQSLIPSALG SASPASSPSQ VDTPSSSSFH IQQLAGFSAP bmy_19592T0/1-930 AGQTPRHLKR LQSLIPSALG SASPASSPSQ VDTPSSSSFH IQQLAGFSAP ENSBTAP00000023219/1-1200 AGQTPRHLKR LQSLIPSALG SASPASSPSQ VDTPSSSSFH IQQLAGFSAP 1051 1100 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000014856/1-1127 AGLSPLLPSS SSSPPPGGGS SSSAPTPSAA AAVAAATAGF GHFHKALGGS ENSP00000261917/1-1203 AGLSPLLPSS SSSPPPGACG SPSAPTPS-A GVAATTIAGF GHFHKALGGS bmy_19592T0/1-930 AGLSPLLPSS SSSPPPGVGS SSSAPTPSAA AAAAAATAGF GHFHKALGGS ENSBTAP00000023219/1-1200 AGLSPLLPSS SSSPPPGVGG SSPAPTPS-- TAAAAATAGF GHFHKALGGS 1101 1150 BACU017933/1-1216 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSLGLAEH FLPPPASARS ENSTTRP00000014856/1-1127 LSSSDSPLLT PLQPGARSPQ ANQPAPPLPG ARGGLGLAEH FLPPPASARS ENSP00000261917/1-1203 LSSSDSPLLT PLQPGARSPQ AAQPSPAPPG ARGGLGLPEH FLPPPPSSRS bmy_19592T0/1-930 LSSSDSPLLT PLQPGARSPQ ANQLAPPLPG ARGGLGLAEH FLPPPASARS ENSBTAP00000023219/1-1200 LSSSDSPLLT PLQPGARSPQ S-QPPPPLPG ARGGLGLAEP FLPPPPSARS 1151 1200 BACU017933/1-1216 PSSSPGQLGQ PPGELSPGLA AGPPSTPETP PRQPERLSFA AGASGGASPV ENSTTRP00000014856/1-1127 PSSSPGQLGQ PPGELSPGLT AGPPSTPETP PRQPERLSLA AGASGGASPV ENSP00000261917/1-1203 PSSSPGQLGQ PPGELSLGLA TGPLSTPETP PRQPEPPSLV AGASGGASPV bmy_19592T0/1-930 PSSSPGQLGQ PPGELSPGLA AGPPSTPETP PRQPERLSFA AGASGGASPV ENSBTAP00000023219/1-1200 PSSSPGQLGQ PPGELSPGLA AGPPSTPETP PRQPERLSLV AGASGGASPV 1201 1250 BACU017933/1-1216 AFTPRGGLSP PGHSPGPPRT FPSAPPRASG SHGSLLLPPA SSPPPPQVPQ ENSTTRP00000014856/1-1127 AFTPRGGLSP PGHSPGPPRT FPSAPPRASG SHGSLLLPPA SSPPPPQVPQ ENSP00000261917/1-1203 GFTPRGGLSP PGHSPGPPRT FPSAPPRASG SHGSLLLPPA SSPPPPQVPQ bmy_19592T0/1-930 AFTPRGGLSS PGHSPGPPRT FPSAPPRASG SHGSLLLPPA SSPPPPQVPQ ENSBTAP00000023219/1-1200 AFTPRGGPSP PGHSPGPPRT FPSAPPRASG SHGSLLLPPA SSPPPPQVPQ 1251 1300 BACU017933/1-1216 RRGTPPLTPG RLTQDLKLIS ASQPALPQDG AQTLRRASPH SSGESVAAFP ENSTTRP00000014856/1-1127 RRGTPPLTPG RLTQDLKLIS ASQPALPQDG AQTLRRASPH SSGESVAAFP ENSP00000261917/1-1203 RRGTPPLTPG RLTQDLKLIS ASQPALPQDG AQTLRRASPH SSGESMAAFP bmy_19592T0/1-930 RRGTPPLTPG RLTQDLKLIS ASQPALPQDG AQTLRRASPH SSGESVAAFP ENSBTAP00000023219/1-1200 RRGTPPLTPG RLTQDLKLIS ASQPALPQDG AQTLRRASPH SSGESVAAFP 1301 1350 BACU017933/1-1216 LFPRGGAGSG G---SGGLSL PGRPYGAVPG QHVTLPRKTS SGSLPPPLSL ENSTTRP00000014856/1-1127 LFPRGGGGSG G--------- ---------- ---------- ---------- ENSP00000261917/1-1203 LFPRAGGGSG GSGSSGGLGP PGRPYGAIPG QHVTLPRKTS SGSLPPPLSL bmy_19592T0/1-930 LFPRGGAGSG G------LGL PGRPYGAVPG QHVTLPRKTS SGSLPPPLSL ENSBTAP00000023219/1-1200 LFPRGGGGSG G---SGGLGL PGRPYGAVPG QHVTLPRKTS SGSLPPPLSL 1351 1400 BACU017933/1-1216 FGARATSSGG PPLTAAPQRE PGARSEPVRS KLPSNL ENSTTRP00000014856/1-1127 ---------- ---------- ---------- ------ ENSP00000261917/1-1203 FGARATSSGG PPLTAGPQRE PGARPEPVRS KLPSNL bmy_19592T0/1-930 FGASATSSGG PPLTAAPQRE PGARSEPVRS KLPSNL ENSBTAP00000023219/1-1200 FGARATSSGG PPLTAAPQRE PGARSEPVRS KLPSNL