KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:14 2014 Check: 00 .. Name: bmy_18498T0/1-509 Len: 763 Check: 6575 Weight: 1.00 Name: BACU004351/1-666 Len: 763 Check: 252 Weight: 1.00 Name: ENSP00000441897/1-741 Len: 763 Check: 2472 Weight: 1.00 Name: ENSTTRP00000002517/1-705 Len: 763 Check: 5414 Weight: 1.00 Name: ENSBTAP00000023240/1-721 Len: 763 Check: 3389 Weight: 1.00 // 1 50 bmy_18498T0/1-509 ---------- ---------- ---------- ---------M DGAPPKDGSA BACU004351/1-666 ---------- --------MD VEDEENMSSS STDVKENCGM DGAPPKDGSA ENSP00000441897/1-741 ---------- --------MD IEDEENMSSS STDVKENRNL DNVSPKDGST ENSTTRP00000002517/1-705 ---------- --------MD VEDEENMSSS STDVKENCSL DGAPPKDGSA ENSBTAP00000023240/1-721 LSDRNSLRQS RNPQKYFAMD IEDEENMSSS STDVKENCNL DGAPPKDSSA 51 100 bmy_18498T0/1-509 PGPGEGAPLS NGGGGGAGRK RALDEGSNGH SKFRLKKRRR APGPALPKNA BACU004351/1-666 PGPGEGAPLS NGGSGGAGRK RALDESSNGH SKFRLKKRRR APGPALPKNA ENSP00000441897/1-741 PGPGEGSQLS NGGGGGPGRK RPLEEGSNGH SKYRLKKRRK TPGPVLPKNA ENSTTRP00000002517/1-705 PGPGEGAPLS NGGGGGAGRK RALDESSNGH SKFRLKKRRR APGPALPKNA ENSBTAP00000023240/1-721 PGPGEGAPLS NGGGGGTSRK RALDEGSNGH AKFRLKKRRR APGPALPKNA 101 150 bmy_18498T0/1-509 LMQLNEIKPG LQYSLLSQTG PVHAPLFVMA VEVNGQVFEG SGPTKKKAKL BACU004351/1-666 LMQLNEIKPG LQYTLLSQTG PVHAPLFVMS VEVNGQVFEG SGPTKKKAKL ENSP00000441897/1-741 LMQLNEIKPG LQYTLLSQTG PVHAPLFVMS VEVNGQVFEG SGPTKKKAKL ENSTTRP00000002517/1-705 LMQLNEIKPG LQYTLLSQTG PVHAPLFVMS VEVNGQVFEG SGPTKKKAKL ENSBTAP00000023240/1-721 LMQLNEIKPG LQYTLLSQTG PVHAPLFLMS VEVNGQVFEG SGPTKKKAKL 151 200 bmy_18498T0/1-509 HAAEKALRSF VQFPNASEAH LAMGRSLSAN ADFTSDQADF PDALFNGFET BACU004351/1-666 HAAEKALRSF VQFPNASEAH LAMGRSLSAN ADFTSDQADF PDALFNGFET ENSP00000441897/1-741 HAAEKALRSF VQFPNASEAH LAMGRTLSVN TDFTSDQADF PDTLFNGFET ENSTTRP00000002517/1-705 HAAEKALRSF VQFPNASEAH LAMGRSLSAN ADFTSDQADF PDALFNGFET ENSBTAP00000023240/1-721 HAAEKALRSF VQFPNASEAH LAMGRSLSTN ADFTSDQADF PDALFNGFET 201 250 bmy_18498T0/1-509 PDRPDMPFYL GANGDDSFSS SGDLSLAASP MPASLAQLPL PVPPPFPPPS BACU004351/1-666 PDRPDMPFYL GANGDDSFSS SGDLSLAASP MPASLAQLPL PVPPPFPPPS ENSP00000441897/1-741 PDKAEPPFYV GSNGDDSFSS SGDLSLSASP VPASLAQPPL PVLPPFPPPS ENSTTRP00000002517/1-705 PDRPDVPFYL GANGDDSFSS SGDLSLAASP VPAGLAQPPL PVPPPFPPPS ENSBTAP00000023240/1-721 PDRSEVPFYL GSNGDDSFSS SGDLSLAASP VPAGLAQPPL PGPPPFPPPS 251 300 bmy_18498T0/1-509 GKNPVMILNE LRPGLKYDFL SESGESHAKN FVLSVVVDGQ FFEGSGRSKK BACU004351/1-666 GKNPVMILNE LRPGLKYDFL SESGESHAKN FVLSVVVDGQ FFEGSGRSKK ENSP00000441897/1-741 GKNPVMILNE LRPGLKYDFL SESGESHAKS FVMSVVVDGQ FFEGSGRNKK ENSTTRP00000002517/1-705 GKNPVMILNE LRPGLKYDFL SESGESHAKN FVLSVVVDGQ FFEGSGRSKK ENSBTAP00000023240/1-721 GKNPVMILNE LRPGLKYDFL SESGESHAKN FVMSVVVDGQ FFEGSGRNKK 301 350 bmy_18498T0/1-509 LAKARAAQSA LATVFNLRLD QTPSRQPVPS EGLQLHSPQV RKAARARPRL BACU004351/1-666 LAKARAAQSA LATVFNLRLD QTPSRQPVPS EGLQLHSPQV LADAVARLVL ENSP00000441897/1-741 LAKARAAQSA LAAIFNLHLD QTPSRQPIPS EGLQLHLPQV LADAVSRLVL ENSTTRP00000002517/1-705 LAKARAAQSA LATVFNLRLD QTPSRQPVPS EGLQLHSPQV LADAVARLVL ENSBTAP00000023240/1-721 LAKARAAQSA LATIFNLHLD QTPSRQPIPS EGLQLHLPQV LADAVARLVL 351 400 bmy_18498T0/1-509 A--------- ---HAFRR-- GAVAMVTGV- ---------- FSSLCP---- BACU004351/1-666 EKFGDLTDNF AAPHARRKVL AGIVMTTGTD VKDAKVISVS TGTKCINGEY ENSP00000441897/1-741 GKFGDLTDNF SSPHARRKVL AGVVMTTGTD VKDAKVISVS TGTKCINGEY ENSTTRP00000002517/1-705 EKFGDLTDNF AAPHARRKVL AGIVMTTGTD VKDAKVISVS TGTKCINGEY ENSBTAP00000023240/1-721 DKFGDLTDSF ASPHARRKVL AGIVMTTGTD VKDAKVISIS TGTKCINGEY 401 450 bmy_18498T0/1-509 ---------- QHGDVLVSPA AGR------- -----PSRDC AGCGAAAKPG BACU004351/1-666 MSDRGLALND CHAEIISRRS LLRFLYTQLE LYL--NSKDD QKRSIFEKSE ENSP00000441897/1-741 MSDRGLALND CHAEIISRRS LLRFLYTQLE LYL--NNKDD QKRSIFQKSE ENSTTRP00000002517/1-705 MSDRGLALND CHAEIISRRS LLRFLYTQLE LYL--NSKDD QKRSIFEKSE ENSBTAP00000023240/1-721 MSDRGLALND CHAEIIARRS LLRFLYTQLE IYLKSNSKDD QKRSIFEKSE 451 500 bmy_18498T0/1-509 QG-----RQV Q--------- CGQCR----- ---------- ---------- BACU004351/1-666 RGGFKLKENV RFHLYISTSP CGDARIFSPH EPVLE----- ---------- ENSP00000441897/1-741 RGGFRLKENV QFHLYISTSP CGDARIFSPH EPILEGSRSY TQAGVQWCNH ENSTTRP00000002517/1-705 RGGFKLKEKV RFHLYISTSP CGDARIFSPH EPVLEAYWY- ---------- ENSBTAP00000023240/1-721 RGGFKLKENV QFHLYISTSP CGDARIFSPH EPILE----- ---------- 501 550 bmy_18498T0/1-509 ---------- ---------- ---------- -PRRVGRGAL PA-------- BACU004351/1-666 ---------- ---------- -----EPADR HPNRKARGQL RTKIESGEGT ENSP00000441897/1-741 GSLQPRPPGL LSDPSTSTFQ GAGTTEPADR HPNRKARGQL RTKIESGEGT ENSTTRP00000002517/1-705 ---------- ---------- -----KPADR HPNRKARGQL RTKIESGEGT ENSBTAP00000023240/1-721 ---------- ---------- -----EPADR HPNRKARGQL RTKIESGEGT 551 600 bmy_18498T0/1-509 --LPAPVATT AHGGLSQRRR E--------- ------GRGG P------EPW BACU004351/1-666 IPVRSNASIQ TWDGVLQGER LLTMSCSDKM ARWNVVGIQG ALLSVFVEPI ENSP00000441897/1-741 IPVRSNASIQ TWDGVLQGER LLTMSCSDKI ARWNVVGIQG SLLSIFVEPI ENSTTRP00000002517/1-705 IPVRSNASIQ TWDGVLQGER LLTMSCSDKM ARWNVVGIQG SLLSVFVEPI ENSBTAP00000023240/1-721 IPVRSNASVQ TWDGVLQGER LLTMSCSDKM ARWNVVGIQG SLLSIFVEPI 601 650 bmy_18498T0/1-509 HLAPAQWGP- ---------- ----PSVSHL GPGYRTGEA- ---------- BACU004351/1-666 YVSSIILGSL YHGDHLSRAM YQRISNIEDL PALYTLNKPL LSGKYLRGGR ENSP00000441897/1-741 YFSSIILGSL YHGDHLSRAM YQRISNIEDL PPLYTLNKPL LSGISNAEAR ENSTTRP00000002517/1-705 YFSSIILGSL YHGDHLSRAM YQRISNIEDL PALYTLNKPL LSGISNAEAR ENSBTAP00000023240/1-721 YFSSIILGSL YHGDHLSRAM YQRISNIEDL PPLYTLNKPL LSGISNAEAR 651 700 bmy_18498T0/1-509 ---GWSPAET QVWVKCQRLA DPVQAEAEPQ ---------- -----RWRAH BACU004351/1-666 LPLSHAP--- --------IL QPLSLRREAP ERGCPEAMGE AG--PEW--- ENSP00000441897/1-741 QP-GKAPNFS VNWTVGDSAI EVINATTGKD ELGRASRLCK HALYCRW-MR ENSTTRP00000002517/1-705 QP-GKAPNFS VNWTVGDSAI EVINATTGKD ELGRASRLCK HALYCRW-MR ENSBTAP00000023240/1-721 QP-GKAPNFS VNWTVGDSAL EVINATTGKD ELGRASRLCK HALYCRW-MR 701 750 bmy_18498T0/1-509 VRRAGASGLL RALQSPPGAW GSRHLEFPEG SLWLPC---- --SAGGG--- BACU004351/1-666 ---KAMGHLN HSHVEKRTIC D--------- -----CSERT IVSEGSK--- ENSP00000441897/1-741 VHGKVPSHLL RSKITKPNVY HESKLAAKEY QAAKARLFTA FIKAGLGAWV ENSTTRP00000002517/1-705 VHGKVPSNLL RSKITKPNVY HESKLVAKEY QAAKACLFRA FIKAGLGAWV ENSBTAP00000023240/1-721 VHGKVPSSLL RSKITKPNVY HESKLVAKEY QAAKACLFRA FIKAGLGAWV 751 800 bmy_18498T0/1-509 -HPS------ --- BACU004351/1-666 ENGPERRAER LT- ENSP00000441897/1-741 EKPTEQDQFS LTP ENSTTRP00000002517/1-705 EKPTEQDQFS LTP ENSBTAP00000023240/1-721 EKPTEQDQFS LTP