KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:20:17 2014 Check: 00 .. Name: ENSTTRP00000012631/1-1296 Len: 1363 Check: 3406 Weight: 1.00 Name: bmy_04400T0/1-995 Len: 1363 Check: 9214 Weight: 1.00 Name: ENSBTAP00000023273/1-1320 Len: 1363 Check: 8397 Weight: 1.00 Name: BACU001955/1-1320 Len: 1363 Check: 8908 Weight: 1.00 // 1 50 ENSTTRP00000012631/1-1296 MQDDSLEAST SISQLLRESY LAETRHQGNN ERSRAEPSSN SFHFGSPSGA bmy_04400T0/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023273/1-1320 MQDDSLEAST SISQLLRESY LAETRHRGNN ERSRAEPSSN PFHFGGSSGA BACU001955/1-1320 MQDDSLEAST SISQLLRESY LAETRHQGNN ERSRAEPSSN SFHFGSPSGA 51 100 ENSTTRP00000012631/1-1296 AEGGGGQDDL PDLSAFLSQE ELDESVNLAR LAINHDPLEK ADEAHARRCF bmy_04400T0/1-995 ---------- ---------- ---------- -------MER AEDVR----- ENSBTAP00000023273/1-1320 AEGGGGQDDL PDLSAFLSQE ELDESVNLAR LAINYDPLEK ADEAQARKRF BACU001955/1-1320 AEGGGGQDDL PDLSAFLSQE ELDESVNLAR LAINHDPLEK ADEAQARRCF 101 150 ENSTTRP00000012631/1-1296 SSDQMKHSPK SSLDPNFCQD NSRSPTNSKE SLQEAKRPQY SSETQSKKVF bmy_04400T0/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023273/1-1320 SSDQTKHSSI SSFDPNFCQD NSQSPTNSKE SLQETKRPQY SSEAQSKKVF BACU001955/1-1320 SSDQMKHSPK SSFDPNFCQD NSRSPTNSKE SLQEAKRPQY SSETQSKKVF 151 200 ENSTTRP00000012631/1-1296 LNKAADFIEE LSSLFKAHSS KRIRPRC--N HKNKLESHSK VMQENSSSFS bmy_04400T0/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023273/1-1320 LNKAADFIEE LSSLFKAHSS KRIRPRACKN HKSKLESQNQ VMQENSSSFP BACU001955/1-1320 LNKAADFIEE LSSLFKAHSS KRIRPRACKN HKNKLESQSK VMQENSSSFS 201 250 ENSTTRP00000012631/1-1296 DLSEGRERSS VPIPIPADTR DNEVNHALEQ QEAKRREAEQ AASEADGGDT bmy_04400T0/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023273/1-1320 DLSERRERSS VPIPIPADTR DNEVNHALEQ QEAKRREAEQ AAGEAASGDT BACU001955/1-1320 DLSERRERSS VPIPIPADTR DNEVNHALEQ QEAKRREAEQ AASEADGGDT 251 300 ENSTTRP00000012631/1-1296 TPGSSPSSLY YEEPLGQPPR FTQKLRSREV PEGTRVQLDC IVVGIPPPEV bmy_04400T0/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023273/1-1320 TPGSSPSSLY YEEPLGQPPR FTQKLRSREV PEGTRVQLDC IVVGIPPPQV BACU001955/1-1320 TPGSSPSSLY YEEPLGQPPR FTQKLRSREV PEGTRVQLDC IVVGIPPPEV 301 350 ENSTTRP00000012631/1-1296 RWYCEGKELE NSPDVHIIQA GKLHSLTIAE AFEEDTGRYS CFASNIYGTD bmy_04400T0/1-995 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023273/1-1320 RWYCEGKELE NSPDIHIIQA GNLHSLTIAE AFEEDTGRYS CFASNIYGTD BACU001955/1-1320 RWYCEGKELE NSPDVHIIQA GNLHSLTIAE AFEEDTGRYS CFASNIYGTD 351 400 ENSTTRP00000012631/1-1296 STSAEIYIEG VSSSDSEGDP NKDEMNRIQK PSEVSSPPTT SAAIPSAVPQ bmy_04400T0/1-995 ---------- VSSSDSEGDP NKDEMNRIQK PNEVSSPPTT SAAIPSAVPQ ENSBTAP00000023273/1-1320 STSAEIYIEG VSSSDSEGDP NKDEMNRIQK PNEVSSPPTT SAGIPSAVPQ BACU001955/1-1320 STSAEIYIEG VSSSDSEGDP NKDEMNRIQK PNEVSSPPTT SAAIPSAVPQ 401 450 ENSTTRP00000012631/1-1296 AQPVVAQPSV STVQQCQSPP NYLQGLDGKP IIAAPVFTKM LQNLSASEGQ bmy_04400T0/1-995 AQHVVAQPSV STIQQCQSPT NYLQGLDGKP IIAAPVFTKM LQNLSASEGQ ENSBTAP00000023273/1-1320 TQHVVVQPRV STIQQCQSPT NYLQGLDGKP IIAAPVFTKM LQNLSASEGQ BACU001955/1-1320 AQHVVAQPSV STIQQCQSPT NYLQGLDGKP IIAAPVFTKM LQNLSASEGQ 451 500 ENSTTRP00000012631/1-1296 LVVFECRVKG APSPKVEWYR EGTLIEDSPD FRILQK---V CMELEEICTL bmy_04400T0/1-995 LVVFECRVKG APSPKVEWYR EGTLIEDSPD FRILQKKPRS MAEPEEICTL ENSBTAP00000023273/1-1320 LVVFECRVKG APSPKVEWYR EGTLIEDSPD FRILQKKPRS MAEPEEICTL BACU001955/1-1320 LVVFECRVKG APSPKVEWYR EGTLIEDSPD FRILQKKPRS MAEPEEICTL 501 550 ENSTTRP00000012631/1-1296 VIAEVFAEDS GCFTCTASNK YGTVSSIAQL DVRGNEDPRN NGSLHSVNST bmy_04400T0/1-995 VIAEVFAEDS GCFTCTARNK YGTVSSIAQL DIRGNEDPRN NGSLHSANST ENSBTAP00000023273/1-1320 VIAEVFAEDS GCFTCTASNK YGTVSSIAQL DVRGNEDLRN NGSLHSANST BACU001955/1-1320 VIAEVFAEDS GCFTCTASNK YGTVSSIAQL DIRGNEDPRN NGSLHSANST 551 600 ENSTTRP00000012631/1-1296 TNLAVIEQQS SPPNPEPPSV EQLPKPKLEG VLVNHNEPRS SSRIGLRVHF bmy_04400T0/1-995 TNLAATEQQP SPPNPEPPSV EQLPKPKLEG VLVNHNEPRS SSRIGLRVHF ENSBTAP00000023273/1-1320 TNLALTEQQP SPPNPEPP-V EQPPKPKLEG VLVNHNEPRS SSRIGLRVHF BACU001955/1-1320 TNLAAIEQQP SPPNPEPPSV EQLPKPKLEG VLVNHNEPRS SSRIGLRVHF 601 650 ENSTTRP00000012631/1-1296 NLPEDDKGSE ASSEGGMVTT NQTRPDSFQE RFNGQSAKIP EPSSPVKEPP bmy_04400T0/1-995 NLPEDDKRSE ASSEGGMVTT NQTRPDSFQE RFNGQSAKIP EPSSPVKEPP ENSBTAP00000023273/1-1320 NLPEDDKGSE ESSEGGVVTT HQTRPDSFQE RFNGQSAKIS EPSSPVKEPP BACU001955/1-1320 NLPEDDKGSE ASSEGGMVTT NQTRPDSFQE RFNGQSAKIP EPSSPVKEPP 651 700 ENSTTRP00000012631/1-1296 PVLAKPKLDS SQLQQLHNQV LLEQQQLQNP SPSSPKEFPF NMSVSTSTAA bmy_04400T0/1-995 PVLAKPKLDS SQLQQLHKQV LLEQQQLQNP SPSSPKEFPF NMSVLTSTAA ENSBTAP00000023273/1-1320 PVLAKPKLDS SQLQQLHNQV LLEQHHLQNP SPSSPKEFPF NMSVLNSTTV BACU001955/1-1320 PVLAKPKLDS SQLQQLHKQV LLEQQQLQNP SPSSPKEFPF NMSVLTSTAA 701 750 ENSTTRP00000012631/1-1296 PAVPMSGKQ- KAPSSQTFSL TRPKHFFPST STTAATVS-S SSPVFTLIST bmy_04400T0/1-995 PGVTMSGKQV KAPSSQTFSL ARPKHFFPSM STTAATVSPS SSPVFTLIST ENSBTAP00000023273/1-1320 PAVTVSSKHA KAPPSQTFSL ARPKHFFPST STTVASVSPS SSPVFTLSST BACU001955/1-1320 PAVTMSGKQV KTPSSQTFSL ARPKHFFPST STTAATVSPS SSPVFTLIST 751 800 ENSTTRP00000012631/1-1296 -LAMQRTVSK KXXXXXXXXX XXXXXXXXXX XXXX-XXXXX XXXXXXXXXX bmy_04400T0/1-995 PQAMQRTVSK ESLLVSHPSA QTKSLGGVSA QNEP-PPPGP TEPAQLPLTF ENSBTAP00000023273/1-1320 PQAMQRTMSK ESLLVTHPSA QTKSLGGASI QNEPLPTPAP TEPAQLPLTF BACU001955/1-1320 PQAMQRTVSK ESLLVSQPLV QTKSLGGVSA QNEP-PPPGL TEPAQLPLTF 801 850 ENSTTRP00000012631/1-1296 XXXXXXXXXP HCVSPTPVSP TSRIQNPVAF LSSVLPSLPA IPPTNAMGLP bmy_04400T0/1-995 SISSGNQFQP HCVSPTPVSP TGRIQNPVAF LSSVLPSLPA IPPTNAMGLP ENSBTAP00000023273/1-1320 SISSGNQFQP RCVSPAPVSP TGRIQNPVAF LSSVLPSLPA IPPTNAMGLP BACU001955/1-1320 SISSGNQFQP HCVSPTPVSP TGRIQNPVAF LSSVLPSLPA IPPTNAMGLP 851 900 ENSTTRP00000012631/1-1296 RSAPSVPSQG LMKKHIKSSQ PVNDDYIRET KNAVILDLGK KMNFSDVRSN bmy_04400T0/1-995 RSAPSVPSQG RMKKHIKSSQ PVNDDYIRET KNAVILDLGK KMNFSDVRSN ENSBTAP00000023273/1-1320 KSAPSMPSQG LMKKNTKSSH PVSDDYIRET KNAVILDLGK KMNFSDVRSN BACU001955/1-1320 RSAPSVPSQG RMKKHIKSSQ PVNDDYIRET KNAVILDLGK KMNFSDVRSN 901 950 ENSTTRP00000012631/1-1296 QQEYKISSFE QRLMNEIEFR LERTPVDESD DEIQHDEIPT GKCIAPIFDK bmy_04400T0/1-995 QQEYKISSFE QRLMNEIEFR LERTPVDESD DEIQHDEIPT GKCIAPIFDK ENSBTAP00000023273/1-1320 QQEYKISSFE QRLMNEIEFR LERTPVDESD DEIQHDEIPT GKCIAPIFDK BACU001955/1-1320 QQEYKISSFE QRLMNEIEFR LERTPVDESD DEIQHDEIPT GKCIAPIFDK 951 1000 ENSTTRP00000012631/1-1296 RLKHFRVTEG SPVTFTCKIV GIPVPKVYWF KDGKQISKRN EHFKMRREGD bmy_04400T0/1-995 RLKHFRVTEG SPVTFTCKIV GIPVPK---- ---------- -HFKMRREGD ENSBTAP00000023273/1-1320 RLKHFRVTEG SPVTFTCKIV GIPVPKVYWF KDGKQISKRN EHFKMKREGD BACU001955/1-1320 RLKHFRVTEG SPVTFTCKIV GIPVPKVYWF KDGKQISKRN EHFKMRREGD 1001 1050 ENSTTRP00000012631/1-1296 GTCSLYIDST TGDDDGNYTI MAANPQXXXX XXXXXXXXXX XXXXXXXXXX bmy_04400T0/1-995 GTCSLHIDST TGDDDGNYTI MAANPQGRIS CSGHLMVQGL PLRSRLTAAG ENSBTAP00000023273/1-1320 GTCSLHINST SSDDDGNYTI MAANPQGRIS CSGHLMVQGL PIRSRLTAAG BACU001955/1-1320 GTCSLHIDST TGDDDGNYTI MAANPQGRIS CSGHLMVQGL PLRSRLTAAG 1051 1100 ENSTTRP00000012631/1-1296 XXXXVRSRAQ ERDKEPLQER FFRPHFLQAP GDMVAHEGRL CRLDCKVSGL bmy_04400T0/1-995 QSHRVRSRAQ GRDKEPLQER FFRPHFLQAP GDMVAHEGRL CRLDCKVSGL ENSBTAP00000023273/1-1320 QSHRGRSRVQ ERDKEPLQER FFRPHFLQAP GDMVAHEGRL CRLDCKVSGL BACU001955/1-1320 QSHRVRSRAQ ERDKEPLQER FFRPHFLQAP GDMVAHEGRL CRLDCKVSGL 1101 1150 ENSTTRP00000012631/1-1296 PPPELTWLLN GQPVLPDTSH KMLVRETGVH SLLIDPLTQR DAGTYTCVAT bmy_04400T0/1-995 PPPELTWLLN GQPVLPDTSH MMLVRETGVH SLLIDPLTQR DAGTYTCVAT ENSBTAP00000023273/1-1320 PPPELTWLLN GQPVLPDTSH KMLVRETGVH SLLIDPLTQR DAGTYTCIAT BACU001955/1-1320 PPPELTWLLN GQPVLPDTSH MMLVRETGVH SLLIDPLTQR DAGTYTCVAT 1151 1200 ENSTTRP00000012631/1-1296 NKTGQNSFSL DLTVVTAAFP ---------- ------GHPV RLECRVIGMP bmy_04400T0/1-995 NKTGQNSFSL DLTVVAKEVK KAPVILEKLQ NSGVPEGHPV RLECRVIGMP ENSBTAP00000023273/1-1320 NKTGQNSFSL ELTVVAKEVK KAPVILEKLQ NSGVPEGHPV RLECRVIGMP BACU001955/1-1320 NKTGQNSFSL DLTVVAKEVK KAPVILEKLQ NSGVPEGHPV RLECRVIGMP 1201 1250 ENSTTRP00000012631/1-1296 PPVFYWKKDN ETIPFTRERI SMHQDTTGYV CLLIQPAKKS DAGWYTLSAK bmy_04400T0/1-995 PPVFYWKKGN ETIPFTRERI SMHQDTTGYV CLLIQPAKKS DAGWYTLSAK ENSBTAP00000023273/1-1320 PPVFYWKKDN ETIPFTRERI SMHQDTTGYV CLLIQPAKKS DAGWYTLSAK BACU001955/1-1320 PPVFYWKKGN ETIPFTRDRI SMHQDTTGYV CLLIQPAKKS DAGWYTLSAK 1251 1300 ENSTTRP00000012631/1-1296 NEAGIVSCTA RLDIYAQ--W HHQIPPP--- MSVRPSGSRY GSLTSKGLDI bmy_04400T0/1-995 NEAGIVSCTA RLDIYGGGLW RGKEDQPDTM VSKQLDLSKF PHCPTCGKES ENSBTAP00000023273/1-1320 NEAGIVSCTA RLDIYAQ--W HHQIPPP--- MTVRPSGSRY GSLTSKGLDI BACU001955/1-1320 NEAGIVSCTA RLDIYAQ--W HHQIPPP--- MSVRPSGSRY GSLTSKGLDI 1301 1350 ENSTTRP00000012631/1-1296 FSAFSSMEST ---------- ---MVYSCS- ---------- ----SRSVVE bmy_04400T0/1-995 FENNSKSIGN CNEIECIPYR MHPVKYSVSI LASIIKSLYD QRAFSNSRIA ENSBTAP00000023273/1-1320 FSAFSSMEST ---------- ---MVYSCS- ---------- ----SRSVVE BACU001955/1-1320 FSAFSSTEST ---------- ---MVYSCS- ---------- ----SRSVVE 1351 1400 ENSTTRP00000012631/1-1296 SDEL------ --- bmy_04400T0/1-995 SPQLDTQPPH HIY ENSBTAP00000023273/1-1320 SDEL------ --- BACU001955/1-1320 SDEL------ ---