KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:21 2014 Check: 00 .. Name: bmy_09868T0/1-285 Len: 347 Check: 1043 Weight: 1.00 Name: BACU002307/1-328 Len: 347 Check: 5549 Weight: 1.00 Name: ENSP00000314407/1-290 Len: 347 Check: 1286 Weight: 1.00 Name: ENSBTAP00000023308/1-290 Len: 347 Check: 639 Weight: 1.00 Name: ENSTTRP00000015250/1-256 Len: 347 Check: 6364 Weight: 1.00 // 1 50 bmy_09868T0/1-285 ---LSQCAEN GYFGCDRARV RNSAPETQNL VGDLLQLSRL TLRDRGKQLS BACU002307/1-328 MADLSFIEDS VPFPEKEEDE EEEEEGVDWG YEEGVEWG-L VFPDANGEYQ ENSP00000314407/1-290 MADLSFIEDT VAFPEKEEDE EEEEEGVEWG YEEGVEWG-L VFPDANGEYQ ENSBTAP00000023308/1-290 MADLSFIEDS VAFPEKEEDE EEEEEGVEWG YEEGVEWG-L VFPDANGEYQ ENSTTRP00000015250/1-256 ---------- ---------- ---------- ----VEWG-L VFPDANGEYQ 51 100 bmy_09868T0/1-285 QLLSLCCGRA LTLLTTLSSR KS--FLVGPD RTLEFSGFP- -------PAY BACU002307/1-328 SPINLNSREA RYDPSLLDVR LSPNYVVCRD CEVANDGHTI QVILKSKSVL ENSP00000314407/1-290 SPINLNSREA RYDPSLLDVR LSPNYVVCRD CEVTNDGHTI QVILKSKSVL ENSBTAP00000023308/1-290 SPINLNSREA RYDPSLLDIR LSPNYVVCRD CEVANDGHTI QVILKSKSVL ENSTTRP00000015250/1-256 SPINLNSREA RYDPSLLDVR LSPNYVVCRD CEVANDGHAI QVILKSKSVL 101 150 bmy_09868T0/1-285 SIAPFPSSHP DPKLSPYPSV GLFCDLIPGK KKKKAPYCRY ENGSTFSNEV BACU002307/1-328 SGGPLPQGH- --EFELYE-- ---VRFHWGR ENQR------ --GSEHTVNF ENSP00000314407/1-290 SGGPLPQGH- --EFELYE-- ---VRFHWGR ENQR------ --GSEHTVNF ENSBTAP00000023308/1-290 SGGPLPQGH- --EFELYE-- ---VRFHWGR ENQR------ --GSEHTVNF ENSTTRP00000015250/1-256 SGGPLPQGH- --EFELYE-- ---VRFHWGR ENQR------ --GSEHTVNF 151 200 bmy_09868T0/1-285 TCLLLLTQLH LIH------- --WNSTLFGS IDEAVGKPHG IAIIALFVQI BACU002307/1-328 KAFPM--EII AIQKVKASEY AVFTDKYLSS IDEAVGKPHG IAIIALFVQI ENSP00000314407/1-290 KAFPM--ELH LIH------- --WNSTLFGS IDEAVGKPHG IAIIALFVQI ENSBTAP00000023308/1-290 KAFPM--ELH LIH------- --WNSTLFGS IDEAVGKPHG IAIIALFVQI ENSTTRP00000015250/1-256 KAFPM--ELH LIH------- --WNSTLFGS IDEAVGKPRG IAIIALFVQI 201 250 bmy_09868T0/1-285 GKEHVGLKT- ---------- GKSKTIPCFN PNTLLP---- ---------- BACU002307/1-328 GKEHVGLKTV TEILQDIQYK GKSKTIPCFN PNTLLPVCNF ENYRWNLPNY ENSP00000314407/1-290 GKEHVGLKAV TEILQDIQYK GKSKTIPCFN PNTLLP---- ---------- ENSBTAP00000023308/1-290 GKEHVGLKAV TEILQDIQYK GKSKTIPCFN PNTLLP---- ---------- ENSTTRP00000015250/1-256 GKEHVGLKAV TEILQDIQYK GKSKTIPCFN PNTLLP---- ---------- 251 300 bmy_09868T0/1-285 ---------- -----DPLLR DYWVYEGSLT IPPCSEGVTW ILFRYPLTIS BACU002307/1-328 FSLTCLSVTR PRDGTDPLLR DYWVYEGSLT IPPCSEGVTW ILFRYPLTIS ENSP00000314407/1-290 ---------- -----DPLLR DYWVYEGSLT IPPCSEGVTW ILFRYPLTIS ENSBTAP00000023308/1-290 ---------- -----DPLLR DYWVYEGSLT IPPCSEGVTW ILFRYPLTIS ENSTTRP00000015250/1-256 ---------- -----DPLLR DYWVYEGSLT IPPCSEGVTW ILFRYPLTIS 301 350 bmy_09868T0/1-285 QLQIEEFRRL RTHAKGAELV EGCDGILGDN FRPTQPLSDR VIRAAFQ BACU002307/1-328 QLQIEEFRRL RTHAKGAELV EGCDGILGDN FRPTQPLSDR VIRAAFQ ENSP00000314407/1-290 QLQIEEFRRL RTHVKGAELV EGCDGILGDN FRPTQPLSDR VIRAAFQ ENSBTAP00000023308/1-290 QLQIEEFRRL RTHVKGAELV EGCDGILGDN FRPTQPLSDR VIRAAFQ ENSTTRP00000015250/1-256 QLQIEEFRRL RTHAKGAELV EGCDGILGDN FRPTQPLSDR VIRAAFQ