KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:22 2014 Check: 00 .. Name: ENSP00000244043/1-500 Len: 589 Check: 5644 Weight: 1.00 Name: ENSBTAP00000023313/1-500 Len: 589 Check: 3070 Weight: 1.00 Name: BACU011339/1-571 Len: 589 Check: 3636 Weight: 1.00 Name: bmy_02931T0/1-486 Len: 589 Check: 4331 Weight: 1.00 Name: ENSTTRP00000004042/1-475 Len: 589 Check: 5563 Weight: 1.00 // 1 50 ENSP00000244043/1-500 MAWAALL--- ---------- ---------- ---------- GL------LA ENSBTAP00000023313/1-500 MSWAVVF--- ---------- ---------- ---------- GL------LA BACU011339/1-571 MVWPLFLFRP HLLLYASCSH IQPPWPPHCS LNTPGTIQLR GLCPCSLCLE bmy_02931T0/1-486 MSWAVVF--- ---------- ---------- ---------- GL------LA ENSTTRP00000004042/1-475 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000244043/1-500 ALLLLLLLSR RRT------- ---------- ---------- ---------- ENSBTAP00000023313/1-500 ALLLLLLLTR RRT------- ---------- ---------- ---------- BACU011339/1-571 ALLLDIHVAP SLTAFRSLVK CLRREAFLST ENLTPCPTLF ILFPASPNGD bmy_02931T0/1-486 ALLLLLLLTR RRT------- ---------- ---------- ---------- ENSTTRP00000004042/1-475 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000244043/1-500 ------RRPG EPPLDLGSIP WLGYALDFGK DAASFLTRMK EKHGDIFTIL ENSBTAP00000023313/1-500 ------RRPG EPPLDLGSIP WLGHALEFGK DAAGFLTRMK EKHGDIFTVL BACU011339/1-571 KCCGFCRRPG EPPLDLGSIP WLGYALEFGK DAASFLTRMK EKHGDIFTVL bmy_02931T0/1-486 ------RRPG EPPLDLGSIP WLGYALEFGK DAASFLTRMK EKHGDIFTVL ENSTTRP00000004042/1-475 -------RPG EPPLDLGSIP WLGYALEFGK DAASFLTRMK EKHGDIFTVL 151 200 ENSP00000244043/1-500 VGGRYVTVLL DPHSYDAVVW EPRTRLDFHA YAIFLMERIF DVQLPHYSPS ENSBTAP00000023313/1-500 VGGRHVTVLL DPHSYDAVVW EPRSRLDFHA YAVFLMERIF DVQLPHYNPG BACU011339/1-571 VGGRYVTVLL DPHSYDMVVW EPRTRLDFHA YAVFLMERIF DVQLPHYSPS bmy_02931T0/1-486 VGGRYVTVLL DPHSYDMVVW EPRTRLDFHA YAIFLMERIF DVQLPHYSPS ENSTTRP00000004042/1-475 VGGRYVTVLL DPHSYDMVVW EPRTRLDFHA YAVFLMERIF DVQLPHYSPS 201 250 ENSP00000244043/1-500 DEKARMKLTL LHRELQALTE AMYTNLHAVL LGDATEAGSG WHEMGLLDFS ENSBTAP00000023313/1-500 DEKSKMKPTL LHKELQALTD AMYTNLRTVL LGDTVEAGSG WHEMGLLEFS BACU011339/1-571 DEKSKMKPTL LHKELQALTE AMYTNLHTVL LGDTTEAGSG WHEMGLLEFS bmy_02931T0/1-486 DEKSKMKPTL LHKELQALTE AMYTNLHTVL LGDTTEAGSG WHEMGLLEFS ENSTTRP00000004042/1-475 DEKSKMKPTL LHKELQALTE AMYTNLHTVL LGDTMEAGSG WHEMGLLEFS 251 300 ENSP00000244043/1-500 YSFLLRAGYL TLYGIEALPR THESQAQDRV HSADVFHTFR QLDRLLPKLA ENSBTAP00000023313/1-500 YGFLLRAGYL TQYGVEAPPH TQESQAQDRV HSADVFHTFR QLDLLLPKLA BACU011339/1-571 YSFLLRAGYL TLYGVEAPPH TQESQAQDRS HSADIFHTFR QLDLLLPKLA bmy_02931T0/1-486 YSFLLRAGYL TLYGVEAPPH TQESQAQDRI HSADVFHTFR QLDLLLPKLA ENSTTRP00000004042/1-475 YSFLLRAGYL TLYGVEAPPH TQESQAQDRV HSADVFHTFR QLDLLLPKLA 301 350 ENSP00000244043/1-500 RGSLSVGDKD HMCSVKSRLW KLLSPARLAR RAHRSKWLES YLLHLEEMGV ENSBTAP00000023313/1-500 RGSLSAGDKD RVGKVKGRLW KLLSPTRLAS RAHRSRWLES YLLHLEEMGV BACU011339/1-571 RGSLSVGDKD QVCRVKGRLW KLLSPARLAT RAHRSKWLES YLLHLEEMG- bmy_02931T0/1-486 RGSLSVGDKD QVCRVKGRLW KLLSPARLAT RAHRSKWLES YLLHLEEMGV ENSTTRP00000004042/1-475 RGSLSVGDKN QVCRVKGRLW KLLSPARLAT RAHRSKWLES YLLHLEEMGV 351 400 ENSP00000244043/1-500 SEEMQARALV LQLWATQGNM GPAAFWLLLF LLKNPEALAA VRGELESILW ENSBTAP00000023313/1-500 SEEMQARALV LQLWATQGNM GPAAFWLLLF LLKNPEALAA VRGELETVLL BACU011339/1-571 ---------- -------GNV GPAAFWLLLF LLKNPEALAA VRGELEPILL bmy_02931T0/1-486 SEEMQARALV LQLWATQGNV GPAAFWLLLF LLKNPEALAA VRGELEPILL ENSTTRP00000004042/1-475 SEEMQARALV LQLWATQGNM GPAAFWVLLF LLRTPEALAA VRGELEPMLL 401 450 ENSP00000244043/1-500 QAEQPVSQTT TLPQKVLDST PVLDSVLSES LRLTAAPFIT REVVVDLAMP ENSBTAP00000023313/1-500 GAEQPISQMT TLPQKVLDSM PVLDSVLSES LRLTAAPFIT REVVADLALP BACU011339/1-571 RVEQPISQMT TLPQKVLDSM PVLDSVLSES LRLTAAPFIT REVVVDLALP bmy_02931T0/1-486 RVEQPISQMT TLPQKVLDSM PVLDSVLSES LRLTAAPFIT REVVVDLALP ENSTTRP00000004042/1-475 QAEQPISQMT ALPQKVLDSM PVLDSVLSES LRLTAAPFIT REVVVDMALP 451 500 ENSP00000244043/1-500 MADGREFNLR RGDRLLLFPF LSPQRDPEIY TDPE------ -VFKYNRFLN ENSBTAP00000023313/1-500 MADGREFSLR RGDRLLLFPF LSPQKDPEIY TDPE------ -VFKYNRFLN BACU011339/1-571 MADGREFTLR CGDRLLLFPF LSPQKDPEIY TDPEGKVIPG TVFKYNRFLN bmy_02931T0/1-486 MADGREFTLR CGDRLLLFPF LSPQKDPEIY TDP------- ---------- ENSTTRP00000004042/1-475 MADGREFTLR CGDRLLLFPF LSPQKDPEIY TDPE------ -VFKYNRFLN 501 550 ENSP00000244043/1-500 PDGSEKKDFY KDGKRLKNYN MPWGAGHNHC LGRSYAVNSI KQFVFLVLVH ENSBTAP00000023313/1-500 PDGSEKKDFY KDGKRLKNYS LPWGAGHNQC LGKGYAVNSI KQFVFLVLTQ BACU011339/1-571 PDGSEKKDFY KDGKRLKNYS MPWGAGHNQC LGRGYAISSI KQFVFLVLTR bmy_02931T0/1-486 ----EKKDFY KDGKRLKNYS MPWGAGHNQC LGRGYAISSI KQFVFLVLAR ENSTTRP00000004042/1-475 PDGSEKKDFY KDGKRLKNYS MPWGAGHNQC LGRGYAISSI KQFVFLVLAR 551 600 ENSP00000244043/1-500 LDLELINADV EIPEFDLSRY GFGLMQPEHD VPVRYRIRP ENSBTAP00000023313/1-500 FDLELITPDV DIPEFDLSRY GFGLMQPEHD VPVRYRIRP BACU011339/1-571 FDLELISPDV EMPEFDLSRY GFGLMQPEHD VPVRYRIRP bmy_02931T0/1-486 FDLELISPDV EMPEFDLSRY GFGLMQPEHD VPVRYRIRP ENSTTRP00000004042/1-475 FDLELISPDV EMPLFDLSRY GLGLMQPEHD VPVRYRIRP