KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:22 2014 Check: 00 .. Name: BACU003408/1-132 Len: 621 Check: 5571 Weight: 1.00 Name: ENSBTAP00000023314/1-580 Len: 621 Check: 4274 Weight: 1.00 Name: ENSP00000362975/1-585 Len: 621 Check: 6971 Weight: 1.00 Name: bmy_06761T0/1-371 Len: 621 Check: 1460 Weight: 1.00 Name: ENSTTRP00000006343/1-602 Len: 621 Check: 3958 Weight: 1.00 // 1 50 BACU003408/1-132 ---------- ---------- --MFSCFCFS LQDNSFSSTA VTECDEDTVS ENSBTAP00000023314/1-580 ---------- ---------- --MFSCFCFS LQDNSFSSTA VTECDEDTVS ENSP00000362975/1-585 ---------- ---------- --MFSCFCFS LQDNSFSSTT VTECDEDPVS bmy_06761T0/1-371 ---------- ---------- --M------- ---------- IYLVSSDPVP ENSTTRP00000006343/1-602 MFVYVLTPGE QSGRRLPGRT WLMFSCFCFS LQDNSFSSTA VTECDEDTVS 51 100 BACU003408/1-132 LHEDQTDCSS LRDEDNKENY PDAGAPLEEP VPSREPPQHV EQPARL---D ENSBTAP00000023314/1-580 LHEDQTDCSS LRDEDNKENY PDARPPLEER APPPIEPQHV EQPPRL---D ENSP00000362975/1-585 LHEDQTDCSS LRDENNKENY PDAGALVEEH APPSWEPQQQ NVEATVLVDS bmy_06761T0/1-371 AHKD------ ---------- ---------- ---------- ---------- ENSTTRP00000006343/1-602 LHEDQTDCSS LRDEDDKENY PDAGAPLEEP VPSREPPQHV EQPTRL---D 101 150 BACU003408/1-132 VLRPSMGNFK SRKPKSIFKA ENGRSHGESQ V--------- ---------- ENSBTAP00000023314/1-580 VLRPTMGNFK SRKPKSIFKA ENGRSHGESQ ETEHVVSSQS ECRGKPGTPA ENSP00000362975/1-585 VLRPSMGNFK SRKPKSIFKA ESGRSHGESQ ETEHVVSSQS ECQVRAGTPA bmy_06761T0/1-371 ---------- ---------V QNG------- ---------- ---------- ENSTTRP00000006343/1-602 VLRPSMGNFK SRKPKSIFKA ENGRSHGESQ ETEHVVPSQS ECRGRTGTPA 151 200 BACU003408/1-132 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023314/1-580 QESAHNPTSR CQETVRVQPR IEQRAAIWPK D--ETQQDFH EEEATQVHGV ENSP00000362975/1-585 HESPQNNAFK CQETVRLQPR IDQRTAISPK DAFETRQDLN EEEAAQVHGV bmy_06761T0/1-371 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006343/1-602 QESPQNHTFR CQETVRAQRR IDQRAAVWPK D--ETRQDLN EEEAAQVHGV 201 250 BACU003408/1-132 ---------- ---------- ---------- -AGSTSSDL- ---------- ENSBTAP00000023314/1-580 KDPAPVSTQS VAAEGAGAAD PAPVHKDGQN EADSTPEDMQ SVETSRLLYH ENSP00000362975/1-585 KDPAPASTQS VLADGTDSAD PSPVHKDGQN EADSAPEDLH SVGTSRLLYH bmy_06761T0/1-371 ---------- ---------- ---------- -ADSAPEDLQ SVETSRLLYH ENSTTRP00000006343/1-602 KDPAPASGQS APAEGADATD PVPVHKDVQS EADSAPEDLQ SVETSRLLCH 251 300 BACU003408/1-132 ---------- ---------- ---------- ---------- --------CQ ENSBTAP00000023314/1-580 ITDGDNPLLS PRCSIFSQSQ RFNLDPESAP SPPSTQQFMM LRSSSRCSCG ENSP00000362975/1-585 ITDGDNPLLS PRCSIFSQSQ RFNLDPESAP SPPSTQQFMM PRSSSRCSCG bmy_06761T0/1-371 ITDGDNPLLS PRCSIFSQSQ RFNLDPESAP SPPSTQQFMI --------CG ENSTTRP00000006343/1-602 ITDGDNPLLS PRCSIFSQSQ RFNLDPESAP SPPSTQQFMM PRSSSRCSCG 301 350 BACU003408/1-132 D--------- ---------- ---------- ---------- ---------- ENSBTAP00000023314/1-580 DGKEPQTITQ LTKHIQSLKR KIRKFEEKFE QEKKYRPSHG DKTSNPEVLK ENSP00000362975/1-585 DGKEPQTITQ LTKHIQSLKR KIRKFEEKFE QEKKYRPSHG DKTSNPEVLK bmy_06761T0/1-371 DGKEPQTITQ LTKHIQSLKR KIRKFEEKFE QEKKYR---- ---------- ENSTTRP00000006343/1-602 DGKEPQTITQ LTKHIQSLKR KIRKFEEKFE QEKKYRPSHG DKTSNPEVLK 351 400 BACU003408/1-132 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023314/1-580 WMNDLAKGRK QLKELKLKLS EEQGSAPKGP PRIPPCEQPT VPRENGKPEA ENSP00000362975/1-585 WMNDLAKGRK QLKELKLKLS EEQGSAPKGP PRNLLCEQPT VPRENGKPEA bmy_06761T0/1-371 ---------- ------LKLS EEQGSAPKGP PRNPSCEQPA VPRENGKPEA ENSTTRP00000006343/1-602 WMNDLAKGRK QLKELKLKLS EEQGSAPKGP PRNPSCEQPA VPRENGKPEA 401 450 BACU003408/1-132 ----RCSSGE ST-------- ---------- ---------- ---------- ENSBTAP00000023314/1-580 VGPEPSSSGE ETPDAVLSCL KEKREQLPSQ EDPKVTKQDK NLIKPLYDRY ENSP00000362975/1-585 AGPEPSSSGE ETPDAALTCL KERREQLPPQ EDSKVTKQDK NLIKPLYDRY bmy_06761T0/1-371 VGPEPGSSGE ETPDAVLTCV KEKREQLPSQ DISKVTKQDK NLIKPLYDRY ENSTTRP00000006343/1-602 VGPEPGSSGE ETPDAVLTCV KEKREQLPSQ EVSKVTKQDK NLIKPLYDRY 451 500 BACU003408/1-132 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023314/1-580 RIIKQILSTP SLIPTI---- ---------- QEEEDSDEDC PQGSQQPSLP ENSP00000362975/1-585 RIIKQILSTP SLIPTI---- ---------- QEEEDSDEDR PQGSQQPSLA bmy_06761T0/1-371 RIIKQILSTP SLIPTIRHLA FCNFNSSYDK QEEEDSDEDC PQGSQQPSLP ENSTTRP00000006343/1-602 RIIKQILSTP SLIPTI---- ---------- QEEEDSDEDC PQGSQQLSLP 501 550 BACU003408/1-132 ---------- ---------- ---------- ---------- ----VTVTVM ENSBTAP00000023314/1-580 NPASHPPAGD HLAHSDETEP VKLLLPDEKK EVKPPTLSMS NLHEATMPVL ENSP00000362975/1-585 DPASHLPVGD HLTYSNETEP VRALLPDEKK EVKPPALSMS NLHEATMPVL bmy_06761T0/1-371 NPASHLPIGD HLTYSNETEP VRLLLPDEKK EIKQPALSMS NLHEATMPVL ENSTTRP00000006343/1-602 NPASHLPIGD HLTYSNETEP VRLLLPDEKK EIKQPALSMS NLHEATMPVL 551 600 BACU003408/1-132 V--------- ---------- ---------- ---------- ---------- ENSBTAP00000023314/1-580 LDHLRETRAD KKRLRKALRE FEEQFFKQTG RSPQKEDRIP MADEYYEYKH ENSP00000362975/1-585 LDHLRETRAD KKRLRKALRE FEEQFFKQTG RSPQKEDRIP MADEYYEYKH bmy_06761T0/1-371 LDHLRETRAD KKRLRKALRE FEEQFFKQTG RSPQKEDRIP MADEYYEYKH ENSTTRP00000006343/1-602 LDHLRETRAD KKRLRKALRE FEEQFFKQTG RSPQKEDRIP MADEYYEYKH 601 650 BACU003408/1-132 ---------- ---------- - ENSBTAP00000023314/1-580 IKAKLRLLEV LISKQDVAKT I ENSP00000362975/1-585 IKAKLRLLEV LISKQDVAKT I bmy_06761T0/1-371 IKAKLRLLEV LISKQDVAKT I ENSTTRP00000006343/1-602 IKAKLRLLEV LISKQDVAKT I