KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:25 2014 Check: 00 .. Name: ENSP00000342118/1-724 Len: 1284 Check: 4882 Weight: 1.00 Name: ENSBTAP00000023347/1-724 Len: 1284 Check: 4994 Weight: 1.00 Name: BACU004023/1-1162 Len: 1284 Check: 4593 Weight: 1.00 Name: bmy_18984T0/1-950 Len: 1284 Check: 6547 Weight: 1.00 Name: ENSTTRP00000015728/1-405 Len: 1284 Check: 8487 Weight: 1.00 // 1 50 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- ---------- BACU004023/1-1162 MSDFSEELIR PTTEDEQEEP RVPSGTGMCL PWLQKHIETI ATGGRQEKDF bmy_18984T0/1-950 ---------- ---------- ---------- ---MNHSMSA VDITAPFCQH ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- ---------- BACU004023/1-1162 AQTTSACLSL IQEALLKHQW QRAAEYMHSY FQILEDSDSN KRQIAPEIIW bmy_18984T0/1-950 PSSSAVRAGL VPASCLGDWK GRDASHCFHK RQLPSSQKGH GSETASVNLV ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- ---------- BACU004023/1-1162 RLGSEILYYH PKSNVETFNT FADRMKNIGV MNYLKISLQH ALYLLHHGML bmy_18984T0/1-950 RGGRE----- ---------- ---------- --------GR KKNSAREGGR ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000342118/1-724 ---------- ---------- --MLRTSTPN LCGGLHCRAP W--------- ENSBTAP00000023347/1-724 ---------- ---------- --MLRRSIPR --GGWSRWTP W--------- BACU004023/1-1162 EDANRNLSQA ETWRYGEKSS SQEVLINLIQ AYKGLLQYYI WSKKKMELSQ bmy_18984T0/1-950 EGNSREQEAS LSTQQPECAR TRMLRRSIPR --GG---RAP W--------- ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000342118/1-724 ---------- ---------- --------L- -SSGI---LC LCLIFLLGQV ENSBTAP00000023347/1-724 ---------- ---------- --------LL TSPRI---FC LSLIVLLGQV BACU004023/1-1162 LDEDDYAYNT ASQNMLNHSW KTSINLCALI QIPGVWDPFV KSYVEMLEFY bmy_18984T0/1-950 ---------- ---------- --------LL TSSGI---FC LCLTVLLGQG ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000342118/1-724 GLLQGHPQCL ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 GLLQGHPQCL ---------- ---------- ---------- ---------- BACU004023/1-1162 GDQDGAREVL TNYAYDEKFP SNPNAHIYLY NFLKREKAPR EKLISVLKIL bmy_18984T0/1-950 GLLQGHPQCL ---------- ---------- ---------- ---------- ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- ---------- BACU004023/1-1162 YQIVPSHKLM LEFHRLLRKS ENEEHHKLGL EVLFGVLDFA GCTKNITAWK bmy_18984T0/1-950 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000342118/1-724 ---------- ---------- ------DYGP PFQ------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ------DYRP PFQ------- ---------- BACU004023/1-1162 YLAKYLRQTL MGSHLAWVQE EWNSRKNWWP SFHFSYFRAK SDWKEDKALA bmy_18984T0/1-950 ---------- ---------- ------DYGP PFQ------- ---------- ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- -----PPLHL ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- -----PLQHL BACU004023/1-1162 CEKALVAGLL LGKDCRYFRN ISKQDHQVLK KKIKQMKKSV KKYSIPLLHL bmy_18984T0/1-950 ---------- ---------- ---------- ---------- -----PLLHL ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000342118/1-724 EFCSDYESFG CCDQHKDRRI AARYWDIMEY FDLKRHELCG DYIKDILCQE ENSBTAP00000023347/1-724 EFCSDYESFG CCDQRKDHRI AARYWDIMEY FDLKGHELCG GYIKDILCQE BACU004023/1-1162 EFCSDYETFG CCDQRKDHRI AARYWDIMEY FDLKGHERCG GYIKDILCQE bmy_18984T0/1-950 EFCSDYESFG CCDQRKDHRI AARYWDIMEY FDLKGHELCG GYIKDILCQE ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------E 501 550 ENSP00000342118/1-724 CSPYAAHLYD AENTQTPLRN LPGLCSDYCS AFHSNCHSAI SLLTNDRGLQ ENSBTAP00000023347/1-724 CSPYAAHLYD AENPRTPLRN LPGLCSDYCS AFHSNCHSAI ALLTNDRRFQ BACU004023/1-1162 CSPYAAHLYD AENPRTPLRN LPGLCSDYCS AFHSNCHSAI SLLTNDRRLQ bmy_18984T0/1-950 CSPYAAHLYD AENPRTPLRN LPGLCSDYCS AFHSNCHSAI SLLTNDRRLQ ENSTTRP00000015728/1-405 CLPCAAHRYD AENPRTPLRN LPDLCSDYCS AFHSNCRSAV SLLTNDRRLQ 551 600 ENSP00000342118/1-724 ESHGRDGTRF CHLLDLPDKD YCFPNVLRND YLNRHLGMVA QDPQGCLQLC ENSBTAP00000023347/1-724 ESPGKDGTRF CHLLNLPDKD YCFPNILRSD HLNRNLGTVA EDRRGCLQLC BACU004023/1-1162 ESHDKDGARF CHLLNVPDKD YCFPNVLRSD HLNRNLGVVA EDPRGCLQLC bmy_18984T0/1-950 ESHDKDGARF CHLLNVPDKD YCFPKVLRSD HLNRNLGVVP EDPQGCLQLC ENSTTRP00000015728/1-405 ESHEKDGARF -WLLNLPDKD HCFPNVLRSD HLNRNLGVVA ENPRGCL--- 601 650 ENSP00000342118/1-724 LSEVANGLRN PVSMVHAGDG THRFFVAEQV GVVWVYLPDG SRLEQPFLDL ENSBTAP00000023347/1-724 LAEVANRLRN PVAMVHAGDG THRFFVAEQV GVVWVYLPDG SRLEQPFLDL BACU004023/1-1162 LAEVANGLRN PVSMVHAGDG THRLFVAEQV GVVWVYLPDG SRLEQPFLDL bmy_18984T0/1-950 LAEVANGLRN PVSMVHAGDG THRLFVAEQV GVVWVYLPDG SRLEQPFLDL ENSTTRP00000015728/1-405 ----ASGLRN PVSMVHAGDG TRRLFVAEQV G---VYLPDG SRLEQPFLDL 651 700 ENSP00000342118/1-724 KNIVLTTPWI GDERGFLGLA FHPKFRHNRK FYIYYSCLDK KKVEKIRISE ENSBTAP00000023347/1-724 KSLVLTTPWI GDERGFLGLA FHPRFRRNRK FYIYYSCLGK KRVEKIRISE BACU004023/1-1162 KSIMLTTPWI GDERGFLGLA FHPQFHRNRK FYIYYSCLGK KRVEKIRISE bmy_18984T0/1-950 KSIVLTTPWI GDERGFLGLA FHPQFHRNRK FYIYYSCLGK KRVEKIRISE ENSTTRP00000015728/1-405 KSIVLITPWM GDERGFLGLA FHPQFHRNRK FYIYYSCLGK KRVEKIRISE 701 750 ENSP00000342118/1-724 MKVSRADPNK ADLKSERVIL EIEEPASNHN GGQLLFGLDG YMYIFTGDGG ENSBTAP00000023347/1-724 MKVSRADPNK ADPKSERVIL EIEEPASNHN GGQLLFGLDG YMYIFTGDGG BACU004023/1-1162 MKLSRADPNR ADLKSERVIL EIEEPASNHN GGQLLFGLDG YMYIFTGDGG bmy_18984T0/1-950 MKLSRADPNK ADPKSERVIL EIEEPASNHN GGQLLFGLDG YMYIFTGDGG ENSTTRP00000015728/1-405 MKLSRADPSK ADPKSE---- ---------- ---------- ---------- 751 800 ENSP00000342118/1-724 QAGDPFGLFG NAQNKSSLLG KVLRIDVNRA GSHGKRYRVP SDNPFVSEPG ENSBTAP00000023347/1-724 QAGDPFGKFG NAQNKSSLLG KVLRIDVNGA GSGGKRYRVP MDNPFVSEPG BACU004023/1-1162 QAGDPFGKFG NAQNKSSLLG KVLRIDVNGA GSGGRRYRVP LDNPFVSEPG bmy_18984T0/1-950 QAGDPFGKFG NAQNK----- ---------- -----RYRVP LDNPFVSEPG ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000342118/1-724 AHPAIYAYGI RNMWRCAVDR GDPITRQGRG RIFCGDVGQN RFEEVDLILK ENSBTAP00000023347/1-724 AHPAIYAYGI RNMWRCAVDR GDPITHQGRG RMFCGDVGEN RFEEVDIIVK BACU004023/1-1162 AHPAVYAYGV RNMWRCAVDR GDPITRQGRG RIFCGDVGQN RFEEVDIIVK bmy_18984T0/1-950 AHPAIYAYGV RNMWRCAVDR GDPITRQGRG RMFCGDVGQN RFEEVDIIVK ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000342118/1-724 GGNYGWRAKE GFACYDKKLC HNASLDDVLP IYAYGHAVGK SVTGGYVYRG ENSBTAP00000023347/1-724 GGNYGWRAKE GFECYDKKLC QNASLDDILP IYAYGHAVGK SVTGGYVYRG BACU004023/1-1162 GGNYGWRAKE GFECYDKKLC HNASLDDILP IYAYGHAVGK SVTGGYVYRG bmy_18984T0/1-950 GGNYGWRAKE GFECYDKKLC HNASLDDILP IYAYGHAVGK SVTGGYVYRG ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000342118/1-724 CESPNLNGLY IFGDFMSGRL MALQEDRKNK KWKKQDLCLG STTSCAFPGL ENSBTAP00000023347/1-724 CESPNLNGLY IFGDFMSGRL MALQEDRKTK KWKKQDICLG STESCAFPGL BACU004023/1-1162 CESPNLNGFY IFGDFMSGRL MALQEDRKTK KWKKKDICLG STESCAFPGL bmy_18984T0/1-950 Y--------- ---------- ------RKTK KWKKKDICLG STESCAFPGL ENSTTRP00000015728/1-405 ---------- -------SRL MALQEDRKTK KW-KQDICLG NTESCAFPGL 951 1000 ENSP00000342118/1-724 ISTHSKFIIS FAEDEAGELY FLATSYPSAY APRGSIYKFV DPSRRAPPGK ENSBTAP00000023347/1-724 ISTHSKFIIS FGEDEAGELY FLATSYPSAY APHGSIYKFV DPSRRAPPGK BACU004023/1-1162 ISTYSKFIIS FAEDEAGELY FLATSYPSAY TPHGSIYKFV DPSRRAPPGK bmy_18984T0/1-950 ISTYSKFIIS FAEDEAGELY FLATSYPSAY TPHGSIYKFV DPSRRAPPGK ENSTTRP00000015728/1-405 ISTYDKFILS FAEGEAGELY FLATSYPSAY TLHGSIYKSV DPSRRAPPGK 1001 1050 ENSP00000342118/1-724 CKYKPVPVRT KSKRIPFRPL AKTVLDLLKE QSEKAARKSS SATLASGPAQ ENSBTAP00000023347/1-724 CKYKPVPVKT RSKRVQFRPL AKMVLDLLKE QSEKAARKLS SATLASSPNR BACU004023/1-1162 CKYKPVPVKT KSKRVQFRPL AKTVLDLLKD QSEEAARKLS NATLASSPDR bmy_18984T0/1-950 CKYKPVPVKT KSKRVQFRPL AKTVLDLLKE QSEEAARKLS NATLASSPDR ENSTTRP00000015728/1-405 RKYKPVPVKT KSKRVQFRPL AKMVLDLLKK KSEEAARKLS NENLASSPDR 1051 1100 ENSP00000342118/1-724 GLSEKGSSKK LASPTSSKNT LRGPGTKKKA RVGPHVRQGK RRKSLKSHSG ENSBTAP00000023347/1-724 ASSQKDSFKK PASPTSSRKT SPGPGAKKRA RVWSPGPQGK RKGIPKRPSG BACU004023/1-1162 ASSQKGSSKK PASPTSSRKT FPRSGAKQRA KAWSSGPQGK RKKSPRRPRG bmy_18984T0/1-950 ASSQKGSSKK PASPTSSRKT FPRSRAKQRA RAWSPGPQGK RKKSPRRPRG ENSTTRP00000015728/1-405 TSSQKGSSKK PASPTSSRKT FPRSGAKQRA RAWSPGPQGK RRKSPRRPRG 1101 1150 ENSP00000342118/1-724 RMRPSAEQKR AGRSLP---- ---------- ---------- ---------- ENSBTAP00000023347/1-724 IARQAAQHRR AGRSLP---- ---------- ---------- ---------- BACU004023/1-1162 RGSQSAQWRR AGKSVPLLLR SRRLVRGRGP REPPCHVEAA TAEGDLRRMG bmy_18984T0/1-950 RGSQSAQWRR AGRSVPLPLR SRRLVRGRGP REPPCHAEAA TAEGDLRRTR ENSTTRP00000015728/1-405 RGSQSAQWRR AGRSVPL--- ---------- ---------- ---------- 1151 1200 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- ---------- BACU004023/1-1162 SRGWRWEPAE RA-------- ---------- ---------- ---------- bmy_18984T0/1-950 SRGWRGQDLG VRLGSEARAA TCHHSAGLSP GHAGHSLSPG NSVWNVHLPV ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000342118/1-724 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---------- ---------- BACU004023/1-1162 ---------- ---------- ---------- ---------- ---------- bmy_18984T0/1-950 GNRRVGAWPQ RRPPAALRNC KRSTASARPA RGRVPNAGRP SAFCNSAGSL ENSTTRP00000015728/1-405 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000342118/1-724 ---------- ---------- ---------- ---- ENSBTAP00000023347/1-724 ---------- ---------- ---------- ---- BACU004023/1-1162 ---------- ---------- ---------- ---- bmy_18984T0/1-950 QGVENEPVEP RASLLPVLGL QVRDFLFRVT FKAQ ENSTTRP00000015728/1-405 ---------- ---------- ---------- ----