KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:26 2014 Check: 00 .. Name: ENSP00000271636/1-1203 Len: 1203 Check: 8898 Weight: 1.00 Name: ENSTTRP00000010869/1-1194 Len: 1203 Check: 1253 Weight: 1.00 Name: ENSBTAP00000023352/1-1194 Len: 1203 Check: 2741 Weight: 1.00 Name: bmy_16037T0/1-651 Len: 1203 Check: 5569 Weight: 1.00 Name: BACU007255/1-1138 Len: 1203 Check: 1063 Weight: 1.00 // 1 50 ENSP00000271636/1-1203 MEQAPNMAEP RGPVDHGVQI RFITEPVSGA EMGTLRRGGR RPAKDARAST ENSTTRP00000010869/1-1194 MEQVSTMAEP RGPVDHGVQI RFITEPVCDA EMGTLRRGGR RPAKDARANT ENSBTAP00000023352/1-1194 MEQASTMAEP RGPVDHGVQI RFITEPVGEA EIGTLRRGGR RPAKDARAST bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 MEQVSTMAEP RGPVDHGVQI RFITEPVCDA EMGTLRRGGR RPAKDARANT 51 100 ENSP00000271636/1-1203 YGVAVRVQGI AGQPFVVLNS GEKGGDSFGV QIKGANDQGA SGALSSDLEL ENSTTRP00000010869/1-1194 YGVAVRVQGI AGQPFVVLNS GEKGGDSFGV QIKGANNRGA PGALSSDSEL ENSBTAP00000023352/1-1194 YGVAVRVQGI AGQPFVVLNS GEKGGDSFGV QIKGANNRGA PGALSSDSEL bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 YGVAVRVQGI AGQPFVVLNS GEKGDDSFGV QIKGANNRGA PGALSSDSEV 101 150 ENSP00000271636/1-1203 PENPYSQVKG FPAPSQSSTS DEEPGAYWNG KLLRSHSQAS LAGPGPVDPS ENSTTRP00000010869/1-1194 PESPYSQAKE FPARSQGSTS DEEPGAHWNG RLLRSQSQAS LAGPAPMGPS ENSBTAP00000023352/1-1194 AESPYSQARE LPAPSQGSTS DEEPGAHWNG RLLRSQSQAS LAGPSLMDPD bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 PESPYSQAKE FPAPSQGSTS DEEPGAHWNG RLPRSQSQAS LAGPAPMGPS 151 200 ENSP00000271636/1-1203 NRSNSMLELA PKVASPGSTI DTAPLSSVDS LINKFDSQLG GQARGRTGRR ENSTTRP00000010869/1-1194 NRSTSLLELA HQGAYLDSTI DTAPLSSVDS LINKFDSHHG GQARGRTGRR ENSBTAP00000023352/1-1194 NRSTSLLELA PQRTSPGNTI DTAPLSSVDS LINKFDSHHG GQSRGRTGRR bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 NRSTSLLELA PQGPYPGSTI DTAPLSSVDS LINKFDSHHG GQARGRTGRR 201 250 ENSP00000271636/1-1203 TRMLPPEQRK RSKSLDSRLP RDTFEERERQ STNHWTSSTK YDNHVGTSKQ ENSTTRP00000010869/1-1194 TRILPPEQRK RSQSLDSRLP RDTVEERERW SPNRWTPSTK HDQHTGSMKQ ENSBTAP00000023352/1-1194 TRMLPPEQRK RSQSLDNRLP RATLQERERQ SPDHWIRGTK HDQRTGSSKP bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 MRVLPPEQRK RSQSLDNRLP RDTIEEREHR SPNHWTPSAQ HDQHTGSLKQ 251 300 ENSP00000271636/1-1203 PAQSQNLSPL SGFSRSRQTQ DWVLQSFEEP RRSAQDPTML QFKSTPDLLR ENSTTRP00000010869/1-1194 SAQ----SCL GGFSRSRQTQ DWVLQSFEEP RGRAQDPPML QFKSTPDLLR ENSBTAP00000023352/1-1194 SAQ----SSL GSFSRARQTQ DWVLQSFEEP RGRVQDPAVL QFKSTPDLLR bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 SAQ----SCL GGLSRSRQTQ DWVLQSFEEP RGRAQDPPML QFKSTPDLLR 301 350 ENSP00000271636/1-1203 DQQEAAPPGS VDHMKATIYG ILREGSSESE TSVRRKVSLV LEKMQPLVMV ENSTTRP00000010869/1-1194 DQQEAVPPGS VDHVKATIYG ILRDGSSESE TSVRRKVSLL LEQMQPLVMV ENSBTAP00000023352/1-1194 DQQEAAPPGS MDHVKATIYG ILREGSSESE TSVRRKVSLV LEQLQPLVMA bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 DQQEAVPPGS VDHVKATIYG VLREGSSESE TAVRRKVSLV LEQMQPLVMA 351 400 ENSP00000271636/1-1203 SSGSTKAVAG QGELTRKVEE LQRKLDEEVK KRQKLEPSQV GLERQLEEKT ENSTTRP00000010869/1-1194 SSGSTK--AG QGELTQKVEE LQKKLDEEVK KRQKLEPFRV GLERQLEEKA ENSBTAP00000023352/1-1194 SPGSAK--VG QAELTQKVEE LQKKLDEEVK KRQKLEPSQV GLERQLEEKA bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 SSGPTK--AG QGELSQKVEE LQKKLDEEVK KRQKLEPSRV GLERQLEEKA 401 450 ENSP00000271636/1-1203 EECSRLQELL ERRKGEAQQS NKELQNMKRL LDQGEDLRHG LETQVMELQN ENSTTRP00000010869/1-1194 EECSRLQELL ERRSGEAQQS TKELQNMKLL LDQGEMVRHG LETQVMELQD ENSBTAP00000023352/1-1194 EECSRLQELL ERRKGEAQQS TKELQNMKLL LDQGERVRHG LETQVMELQD bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 EECSRLQELL ERRNGEAQQS TKELQNMKLL LDQGERVRHG LETQVMELQD 451 500 ENSP00000271636/1-1203 KLKHVQGPEP AKEVLLKDLL ETRELLEEVL EGKQRVEEQL RLRERELTAL ENSTTRP00000010869/1-1194 KLKQAQGPEP AKEVLMKDLV ETRELLEEVL EGKQRVEEQL RLRERELTAL ENSBTAP00000023352/1-1194 KLKQAHGPEA AKEVLMKDLI ETRELLEEVL EGKQRVEEQL RLRERELTAL bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------- BACU007255/1-1138 KLKQAQGPEP AKEVLMKDLV ETRELLEEVL EGKQRVEEHL RLRERELTAL 501 550 ENSP00000271636/1-1203 KGALKEEVAS RDQEVEHVRQ QYQRDTEQLR RSMQDATQDH AVLEAERQKM ENSTTRP00000010869/1-1194 KGALKEEVAS RDQEVEHVRQ QYQRDAEQLR RSMQDATQXX XXXXXXXXXX ENSBTAP00000023352/1-1194 KGALKEEVAS RDQEVEHVRQ QYQRDTEQLR RSMQDVTQDH AALEAEKQKM bmy_16037T0/1-651 ---------- ---------- ---------- ---------- ---------M BACU007255/1-1138 KGALKEEVAS RDQE------ ---------- --------DH AALEAERQKM 551 600 ENSP00000271636/1-1203 SALVRGLQRE LEETSEETGH WQSMFQKNKE DLRATKQELL QLRMEKEEME ENSTTRP00000010869/1-1194 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXLL QLRMEKEEME ENSBTAP00000023352/1-1194 SALVRGLQKE LEETSEETGH WQNMFQKNKE ELRATKQQLL QLRMEKDELE bmy_16037T0/1-651 SALVRELQRE LEETSEETGH WQNMFQKNKE ELRATKQELL QLRMEKEEME BACU007255/1-1138 SALVRELQRE LEETSEETGH WQNMFQKNKE ELRATKQELL QLRMEKEEME 601 650 ENSP00000271636/1-1203 EELGEKIEVL QRELEQARAS AGDTRQVEVL KKELLRTQEE LKELQAERQS ENSTTRP00000010869/1-1194 EELGEKIEVL QRELGQARAD AGDTRQVEEL KKELRQTQEE LKELQAEKQS ENSBTAP00000023352/1-1194 EELGEKIEAL QRELGQARTG AGDTRQVEEL KKELRRTQEE LKELQEEQQS bmy_16037T0/1-651 EELAEKIEVL QRELGQARAG AGDTRQVEEL KKELRRTQEE LKELQAEQQS BACU007255/1-1138 EELAEKMEVL QRELGQARAG AGDTRQVEEL RKELRRTQEE LKELQAEQQS 651 700 ENSP00000271636/1-1203 QEVAGRHRDR ELEKQLAVLR VEADRGRELE EQNLQLQKTL QQLRQDCEEA ENSTTRP00000010869/1-1194 QEVTRRHRER ELEKQ---LR VEAERGRGLE LQNLQLQKTL QQLRQDCEEA ENSBTAP00000023352/1-1194 QEVAGRHRER ELEKQ---LR VEAERSRGLE EQNLQLQKTL QQLRQDCEEA bmy_16037T0/1-651 QEVTGRHRER ELEKQ---LR VEAERGRGLE QQNFQLQKTL QQLRQDCEEA BACU007255/1-1138 QEVTGRHRER ELEKQ---LR ---------- ---------- ---------- 701 750 ENSP00000271636/1-1203 SKAKMVAEAE ATVLGQRRAA VETTLRETQE ENDEFRRRIL GLEQQLKETR ENSTTRP00000010869/1-1194 SKAQMAAEAE VAVLGQRRTA VETTLRETQE ENDDFRRRIL GLEQQLKEAR ENSBTAP00000023352/1-1194 SKAQMAAETE AAVLGQRRTA VETTLRETQE ENDEFRRRIL GLEQQLKEAR bmy_16037T0/1-651 SKAQMAAEAE VAVLGQRRTA VETTLRETQE ENDEFRRRIL GLEQQLKEAR BACU007255/1-1138 --AQMAAEAE VAVLGQRRTA VETTLRETQE ENDEFRRRIL GLEQQLKEAR 751 800 ENSP00000271636/1-1203 GLVDGGEAVE ARLRDKLQRL EAEKQQLEEA LNASQEEEGS LAAAKRALEA ENSTTRP00000010869/1-1194 GLAEGGEVAE ARLRDKVQRL EAEKQRLEEA LNTAQEEEGS LTAAKRALEA ENSBTAP00000023352/1-1194 GLAEGGEVAE ARLRDKVQRL EAEKQRLQEA LNAAQEEEGS LAAAKRALEA bmy_16037T0/1-651 GLAEGGEVAE ARLRDKVQRL EAEKQQLEEA LNTAQEEEGS LAAAKRALEA BACU007255/1-1138 GLAEGGEVAE ARLRDKVQRL EAEKQRLEEA LNTAQEEEGS LAAAKRALEA 801 850 ENSP00000271636/1-1203 RLEEAQRGLA RLGQEQQTLN RALEEEGKQR EVLRRGKAEL EEQKRLLDRT ENSTTRP00000010869/1-1194 RLEEAQRGLA RLGQEQQALN RALEEEGKQR EALRRSKTEL EEQKRLLDRT ENSBTAP00000023352/1-1194 RLEEAQRGLT RLGQEQQALN RALEEEGKQR EVLRRSKAEL EEQKRLLDRT bmy_16037T0/1-651 RLEEAQRGLA RLGQEQQALN RALEEEGKQR EALRRSKAEL EEQKRLLDRT BACU007255/1-1138 RLEEAQRGLA RLGQEQQALN RALEEEGKQR EALRRSKAEL EEQKRLLDRT 851 900 ENSP00000271636/1-1203 VDRLNKELEK IGEDSKQALQ QLQAQLEDYK EKARREVADA QRQAKDWASE ENSTTRP00000010869/1-1194 VDRLNKELEQ IGNDSKQALQ QLQAQLEDYK EKARREVADA QRQAKEWASE ENSBTAP00000023352/1-1194 VDRLNKELEQ IGDDSKQALQ QLQAQLEDYK EKARREVADA QRQAKEWASE bmy_16037T0/1-651 VDRLNKELEQ IGDDSKQALQ QLQAQMEDYK EKARREVADA QRQAKEWASE BACU007255/1-1138 VDRLNKELEQ IGDDSKQALQ QLQAQMEDYK EKARREVADA QRQAKEWASE 901 950 ENSP00000271636/1-1203 AEKTSGGLSR LQDEIQRLRQ ALQASQAERD TARLDKELLA QRLQGLEQEA ENSTTRP00000010869/1-1194 AEKTAGGLSR LQDETQRLRQ GLQASQAERD SARLDKELLV QRLQGLEQEA ENSBTAP00000023352/1-1194 AEKTSGGLSR LQDETQRLRQ ALQASQADRD TARLDKELLV QRLQGLEQEA bmy_16037T0/1-651 AEKTAGGLSR LQDETQRLRQ GLQASQAERD SARLDKELLV QRLQGLEQEA BACU007255/1-1138 AEKTAGGLSR LQDETQRLRQ GLQASQAERD SARLDKELLV QRLQGLEQEA 951 1000 ENSP00000271636/1-1203 ENKKRSQDDR ARQLKGLEEK VSRLETELDE EKNTVELLTD RVNRGRDQVD ENSTTRP00000010869/1-1194 ENKKRSQDDR SRQLKGLEEK VSRLEVELDE ERSTVELLTE RMNRGRDQVD ENSBTAP00000023352/1-1194 ENKKRSQDDK SRQLKSLEEK VSRLEAELDE EKSTVELLTD RMNRGRDQVD bmy_16037T0/1-651 ENKKRSQDDR SRQLKGLEEK VSRLEVELDE ERSTVELLTE RMNRGRDQVD BACU007255/1-1138 ENKKRSQDDR SRQLKGLEEK VSRLEVELDE ERSTVELLTE RMNRGRDQVD 1001 1050 ENSP00000271636/1-1203 QLRTELMQER SARQDLECDK ISLERQNKDL KTRLASSEGF QKPSASLSQL ENSTTRP00000010869/1-1194 QLRTELMQER AARQDLECDK ISLERQNKDL KSRLASSEGF QKPSASLSQL ENSBTAP00000023352/1-1194 QLRTELMQER SARQDLECDK ISLERQNKDL KSRLASSEGF QKPSASLSQL bmy_16037T0/1-651 QLRTELMQER SARQDLECDK ISLERQNKDL KSRLASSEGF QKPSASLSQL BACU007255/1-1138 QLRTELMQER SARQDLECDK ISLERQNKDL KSRLASSEGF QKPSASLSQL 1051 1100 ENSP00000271636/1-1203 ESQNQLLQER LQAEEREKTV LQSTNRKLER KVKELSIQIE DERQHVNDQK ENSTTRP00000010869/1-1194 ESQNRELQER LQAEEREKTV LQSTNRKLER RVKELSIQID DERQHVNDQK ENSBTAP00000023352/1-1194 ESQNRELQER LQAEEREKTV LQSTNRKLER RVKELSIQID DERQHVNDQK bmy_16037T0/1-651 ESQNRELQER LQAEEREKTV LQSTNRKLER RVKELSIQID DERQHVNDQK BACU007255/1-1138 ESQNRELQER LQAEEREKTV LQSTNRKLER RVKELSIQID DERQHVNDQK 1101 1150 ENSP00000271636/1-1203 DQLSLRVKAL KRQVDEAEEE IERLDGLRKK AQREVEEQHE VNEQLQARIK ENSTTRP00000010869/1-1194 DQLSLRVKAL KRQVDEAEEE IERLDGLRKK AQRELEEQHE VNEQLQARIK ENSBTAP00000023352/1-1194 DQLSLRVKAL KRQVDEAEEE IERLDSLRKK AQRELEEQHE VNEQLQARIK bmy_16037T0/1-651 DQLSLRVKAL KRQVDEAEEE IERLDGLRKK AQRELEEQHE VNEQLQARIK BACU007255/1-1138 DQLSLRVKAL KRQVDEAEEE IERLDGLRKK AQREVEEQHE VNEQLQARIK 1151 1200 ENSP00000271636/1-1203 SLEKDSWRKA SRSAAESALK NEGLSSDEEF DSVYDPSSIA SLLTESNLQT ENSTTRP00000010869/1-1194 VLEKDSWRKA SRSAAESTLQ HEGLSSDEEF DSVYDPSSIA SLLTESNLQT ENSBTAP00000023352/1-1194 ALEKDSWRKA SRSAAESTLQ HEGLSSDEEF DSVYDPSSIA SLLTESNLQT bmy_16037T0/1-651 VLEKDSWRKA SRSAAESTLQ HEGLSSDEEF DSVYDPSSIA SLLTESNLQT BACU007255/1-1138 VLEKDSWRKT SRSAAESTLQ HEGLSSDEEF DSVYDPSSIA SLLTESNLQT 1201 1250 ENSP00000271636/1-1203 SSC ENSTTRP00000010869/1-1194 SSC ENSBTAP00000023352/1-1194 SSC bmy_16037T0/1-651 SSC BACU007255/1-1138 SSC