KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:27 2014 Check: 00 .. Name: ENSBTAP00000023356/1-299 Len: 443 Check: 8426 Weight: 1.00 Name: ENSP00000326879/1-442 Len: 443 Check: 5720 Weight: 1.00 Name: ENSTTRP00000003964/1-442 Len: 443 Check: 1070 Weight: 1.00 Name: bmy_21859T0/1-342 Len: 443 Check: 719 Weight: 1.00 Name: BACU015046/1-400 Len: 443 Check: 5149 Weight: 1.00 // 1 50 ENSBTAP00000023356/1-299 MSESGGQRAR LRRYSELPVW VVEDHQEVLP FIYRAIGSKH LPASNISFVH ENSP00000326879/1-442 MSDSAGGRAG LRRYPKLPVW VVEDHQEVLP FIYRAIGSKH LPASNVSFLH ENSTTRP00000003964/1-442 MSEFTGECAR LRRYHELPVW VVEDHQEVLP FIYRAIGSKH LPASNISFVH bmy_21859T0/1-342 MSEFTGECAR LRRYHELPVW VVEDHQEVLP FIYRAIGSKH LPASNISFVH BACU015046/1-400 MSEFTGECAR LRRYHELPVW VVEDHQEVLP FIYRAIGSKH LPASNISFVH 51 100 ENSBTAP00000023356/1-299 FDSHPDLLIP VDMPADTVFD KETLFGELSI ENWIMPAVYA GHFSHVVWLH ENSP00000326879/1-442 FDSHPDLLIP VNMPADTVFD KETLFGELSI ENWIMPAVYA GHFSHVIWFH ENSTTRP00000003964/1-442 FDSHPDLLIP VNMPADTVFD KETLFGELSI ENWIIPAVYA GHFSHVIWLH bmy_21859T0/1-342 FDSHPDLLIP VNMPADTVFD KETLFGELSI ENWIIPAVYA GHFSHVIWLH BACU015046/1-400 FDSHPDLLIP VNMPADTVFD KETLFGELSI ENWIIPAVYA GHFSHVIWLH 101 150 ENSBTAP00000023356/1-299 PTWAQQIREG RHHFLVGKDT STTTIRVTST DHYFLSDGLY VTEDLLENPK ENSP00000326879/1-442 PTWAQQIREG RHHFLVGKDT STTTIRVTST DHYFLSDGLY VPEDQLENQK ENSTTRP00000003964/1-442 PTWAQQIREG RHHFLVGKDT STTTIRVTST DHYFLSDGLY VTEDQLENQK bmy_21859T0/1-342 PTWAQQIREG RHHFLVGKDT STTTIRVTST DHYFLSDGLY VTEDQLENQK BACU015046/1-400 PTWAQQIREG RHHFLVGKDT STTTIRVTST DHYFLSDGLY VTEDQLENQK 151 200 ENSBTAP00000023356/1-299 PLQLDVIMVK PYKLCHSQGE NDAVSSAKKP KLALEDSENT ASANGDSCSE ENSP00000326879/1-442 PLQLDVIMVK PYKLCNNQEE NDAVSSAKKP KLALEDSENT ASTNCDSSSE ENSTTRP00000003964/1-442 PLQLDVIMVK PYKLCNNQEE NDTVSSAKKP KLALEDAENT ASTNGESCSE bmy_21859T0/1-342 PLQLDVIMVK PYKLCNNQEE NDTVSSAKKP KLALEDAENT ASTNGESCSE BACU015046/1-400 PLQLDVIMVK PYKLCNNQEE NDAVSSAKKP KLALEDAENT ASTNGESCSE 201 250 ENSBTAP00000023356/1-299 GLGKDTVTQT RDHTCLQPSC SCSSESHECQ TAVSTGEILE ILEKRDAFVL ENSP00000326879/1-442 GLEKDTATQR SDQTCLEPSC SCSSENQECQ TAASTGEILE ILKKGKAFVL ENSTTRP00000003964/1-442 GLE-DSVTQR RDQTCLQPSC SCSSESQECH TSVSTGEILK ILEKGDAFVL bmy_21859T0/1-342 GLENDSVTQR RDQTCLQPSC SCSSESQECH TSVSTGEILE ILEKGDAF-- BACU015046/1-400 GLENDSVTQR RDQTCLQPSC SCSSESQECH TSVSTGEILE ILEKGDAFVL 251 300 ENSBTAP00000023356/1-299 DIDLDFFSVK NPFKEMFTQE EYKILQELYQ FKKPGSNLTE VSFVSF---- ENSP00000326879/1-442 DIDLDFFSVK NPFKEMFTQE EYKILQELYQ FKKPGTNLTE EDLVDIVDTR ENSTTRP00000003964/1-442 DIDLDFFSVK NPFKEMFTQE EYKILKELYQ FKKPGTNLTE EDLVDCVDTR bmy_21859T0/1-342 ---------- ---------E EYKILQELYQ FKKPGTNLTE ---------- BACU015046/1-400 DIDLDFFSVK NPFKEMFTQE EYKILQELYQ FKKPGTNLTE EDLVDCVDTR 301 350 ENSBTAP00000023356/1-299 ---------- ---------- ---------- ---------- ---------- ENSP00000326879/1-442 IHQLEDLEAT FADLCDGDDE ETVQRWASNP GMESLVPLVQ SLKKRMEVPD ENSTTRP00000003964/1-442 IHQLEDLEAA FADLCDGDDE ETVQKWASYP RMESLVPLVQ SLKKRMEAPD bmy_21859T0/1-342 ---------- ---------- ---------- ---------- ---------- BACU015046/1-400 IHQLEDLEAA FADLCDGDDE ETVQKWASNP GMESLVPLVQ SLKKRMEAPD 351 400 ENSBTAP00000023356/1-299 -------GLV ---------- ---------- ---------- ---------- ENSP00000326879/1-442 YEMVHQAGLT CDYSELPHHI STEQEIECLI QSVHYLLKNL PNPTLVTIAR ENSTTRP00000003964/1-442 YEMVHQAGLT CDYSELPHHV STEQEIEYLI QSVYYVLKNL PKPTVVTIAR bmy_21859T0/1-342 ---VHQAGLT CDYSELPHHI STEQEIEYLI QSV------- ---------- BACU015046/1-400 YEMVHQAGLT CDYSELPHHI STEQEIEYLI QSVYYVLKNL PKPTVVTIAR 401 450 ENSBTAP00000023356/1-299 ---------- ---------- ---------- ---------- --- ENSP00000326879/1-442 SSLDDYCPSD QVDTIQEKVL NMLRALYGNL DLQ-VYAAES PPS ENSTTRP00000003964/1-442 SSLDDYCPSE QVDTIQEKVI SVLRSLYGSL DVHLVYSAES TSS bmy_21859T0/1-342 SSLDDYCPSE QVDTIQEKVI SVLRSLYGPL DVHLVYSAES TSS BACU015046/1-400 ---------- ---------- ---------- ---------- ---