KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:28 2014 Check: 00 .. Name: ENSTTRP00000004224/1-1121 Len: 1286 Check: 3419 Weight: 1.00 Name: ENSP00000404296/1-1282 Len: 1286 Check: 4246 Weight: 1.00 Name: ENSBTAP00000023359/1-1223 Len: 1286 Check: 1782 Weight: 1.00 Name: BACU016333/1-349 Len: 1286 Check: 6492 Weight: 1.00 Name: bmy_16146T0/1-824 Len: 1286 Check: 5028 Weight: 1.00 // 1 50 ENSTTRP00000004224/1-1121 ---------- ---------- ---------- ---------- ---------- ENSP00000404296/1-1282 MAADLNLEWI SLPRSWTYGI TRGGRVFFIN EEAKSTTWLH PVTGEAVVTG ENSBTAP00000023359/1-1223 ---------- ---------- ---------- ---------- ---------- BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004224/1-1121 -------LPT GWEEAYTFEG ARYYINHNER KVTCKHPVTG QPSQDNCIFV ENSP00000404296/1-1282 HRRQSTDLPT GWEEAYTFEG ARYYINHNER KVTCKHPVTG QPSQDNCIFV ENSBTAP00000023359/1-1223 ---------- ---EEIGYFA TWYFVNHNER KVTCKHPVTG QPSQDNCIFV BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000004224/1-1121 VNEQTVATMT SDEKKERPIS MINEASNYNM SSDYAVHPVS PVGRXXXXXX ENSP00000404296/1-1282 VNEQTVATMT SEEKKERPIS MINEASNYNV TSDYAVHPMS PVGRTSRASK ENSBTAP00000023359/1-1223 VNEQTVATMT SEEKKERPIS MINEASNYNM TSDYAVHPMS PVGRTSRASK BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 --------MT SDEKKERPIS MINEASNYNT TSDYAVHPVS PVGR------ 151 200 ENSTTRP00000004224/1-1121 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXD STGMKLWKKR WFVLSDLCLF ENSP00000404296/1-1282 KVHNFGKRSN SIKRNPNAPV VRRGWLYKQD STGMKLWKKR WFVLSDLCLF ENSBTAP00000023359/1-1223 KVHNFGKRSN SIKRNPNAPV VRRGWLYKQD STGMKLWKKR WFVLSDLCLF BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------D STGMKLWKKR WFVLSDLCLF 201 250 ENSTTRP00000004224/1-1121 YYRDEKEEGI LGSILLPSFQ IAMLTSEDHI NRKYAFKAAH PNMRTYYFCT ENSP00000404296/1-1282 YYRDEKEEGI LGSILLPSFQ IALLTSEDHI NRKYAFKAAH PNMRTYYFCT ENSBTAP00000023359/1-1223 YYRDEKEEGI LGSILLPSFQ IALLTSEDHI NRKYAFKAAH PNMRTYYFCT BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 YYRDEKEEGI LGSILLPSFQ IAMLTSEDHI NRKYAFKAAH PNMRTYYFCT 251 300 ENSTTRP00000004224/1-1121 DTGKEMELWM KAMLDAALVQ TEPVKRV--- ---DKITSEN APTKEINNFP ENSP00000404296/1-1282 DTGKEMELWM KAMLDAALVQ TEPVKRITFN FRVDKITSEN APTKETNNIP ENSBTAP00000023359/1-1223 DTGKEMELWM KAMLDAALVQ TEPVKRITFN IRVDKITSEN APAKEINNFP BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 DTGKEMELWM KAMLDAALVQ TEPVKRITFN FR-------- ---------- 301 350 ENSTTRP00000004224/1-1121 NHRVLIKPEV QNNQKNKEMS KNEEKKALEA ERYGFQKDGQ DRPLTKISSV ENSP00000404296/1-1282 NHRVLIKPEI QNNQKNKEMS KIEEKKALEA EKYGFQKDGQ DRPLTKINSV ENSBTAP00000023359/1-1223 NHRVLIKPEV QNNQKNKEMS RNEEKKALEA EKYGFQKDGQ DRPLTKINSV BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000004224/1-1121 KLNSLSSEYE SGSTCPGQTG HYRPVNVNSS ENKTVNVSLA DLRGGSHPNT ENSP00000404296/1-1282 KLNSLPSEYE SGSACPAQTV HYRPINLSSS ENKIVNVSLA DLRGGNRPNT ENSBTAP00000023359/1-1223 KLNSLSSEYE SGLTCPGQTG HYRPVNLNSS ENKTVNVSLA DLRGGSHPNT BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000004224/1-1121 GPLHTEADRV IQRTNSMQQL EQWIKIQKGR GHEEETRGVI SYQTLPRNMP ENSP00000404296/1-1282 GPLYTEADRV IQRTNSMQQL EQWIKIQKGR GHEEETRGVI SYQTLPRNMP ENSBTAP00000023359/1-1223 GPLHTEADRV IQRTNSMQQL EQWIKIQKGR GHEEETRGVI SYQTLPRNMP BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------- --------VI SYQTLPRNMP 451 500 ENSTTRP00000004224/1-1121 SHRTHIVARY PEGYRTLPRN SKTRPESICS VTPSVHDKTA GPAAEEKRRS ENSP00000404296/1-1282 SHRAQIMARY PEGYRTLPRN SKTRPESICS VTPSTHDKTL GPGAEEKRRS ENSBTAP00000023359/1-1223 SHRAPVMARY PEGYRTLPRN SKTRPESICS ITPSAHDKTA GPGAEEKRRS BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 SHRAQIVARY PEGYRTLPRN SKTRPESICS VTPSVHDKTA GPGAEEKRRS 501 550 ENSTTRP00000004224/1-1121 MRDDTMWQLY EWQQRQFYNK QGTLPRHGTL TSPKTMVNIS DQTMHSIPTS ENSP00000404296/1-1282 MRDDTMWQLY EWQQRQFYNK QSTLPRHSTL SSPKTMVNIS DQTMHSIPTS ENSBTAP00000023359/1-1223 MRDDTMWQLY EWQQRQFYNK QGTLPRHSSL TSPKTMVNIS DQTMHSIPTS BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 MRDDTMWQLY EWQQRQFYNK QGTLPRHGTL TSPKTMVNIS DQTMHSIPTS 551 600 ENSTTRP00000004224/1-1121 PSHGSLAAYQ GYSPQRTYRS EVSSPIQRGD VTIDRRHRAH HPKHMYVPDR ENSP00000404296/1-1282 PSHGSIAAYQ GYSPQRTYRS EVSSPIQRGD VTIDRRHRAH HPKHVYVPDR ENSBTAP00000023359/1-1223 PSHGSIAAYQ GFSPQRTYRS EVSSPIQRGD VTIDRRHRAH HPKHMYVPDR BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 PSHGSIAAYQ GYSPQRTYRS EVSSPIQRGD VTIDRRHRAH HPK------- 601 650 ENSTTRP00000004224/1-1121 RSMPAGLTLQ SVSPQSLQGK T--------- ---------- ---------- ENSP00000404296/1-1282 RSVPAGLTLQ SVSPQSLQGK TPEELTLLLI KLRRQQAELS SIREHTLAQL ENSBTAP00000023359/1-1223 RSMPAGLTLQ SVSPQSLQGK TPEELTLLLI KLRRQQAELS SIREHTLAQL BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- -PEELTLLLI KLRRQQAELS SVREHTLAQL 651 700 ENSTTRP00000004224/1-1121 ---------- ---------- ---------- ---------- ---------- ENSP00000404296/1-1282 MQLKLEAHSP KNEILSHHLQ RNTIYLDHQM KENEPIITMV HTMIENSALR ENSBTAP00000023359/1-1223 MQLKLEAHSP KNEILSHHLQ RNTIYLDHQM KENEPIITMV HTMIENSALR BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 MQLKLEAHSP ---------- ---------- ---------- ---------- 701 750 ENSTTRP00000004224/1-1121 ---------- --------LS QDECRGTLYK YRPEEVDIDV KLSRLCEQDK ENSP00000404296/1-1282 PQLYQQFLRQ KSKISLYCLS QDEGRGTLYK YRPEEVDIDA KLSRLCEQDK ENSBTAP00000023359/1-1223 PQLYQQFLRQ RNKISLYCLS QDECRGTLYK YRPEEVDIDA KLSRLCEQDK BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- ---------- ---------- ---------- ---------- 751 800 ENSTTRP00000004224/1-1121 VVHALEEKLQ QLHKEKYTLE QALLSASQEI EMNADNPAAI QTVVLQRDDL ENSP00000404296/1-1282 VVHALEEKLQ QLHKEKYTLE QALLSASQEI EMHADNPAAI QTVVLQRDDL ENSBTAP00000023359/1-1223 VVHALEEKLQ QLHKEKYTLE QALLSASQEI EMNADNPAAI QTVVLQRDDL BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 ---------- -----KYTLE QALLSASQEI EMNADNPAAI QTVVLQRDDL 801 850 ENSTTRP00000004224/1-1121 QNGLLSTCRE LSRATAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404296/1-1282 QNGLLSTCRE LSRATAELER AWREYDKLEY DVTVTRNQMQ EQLDHLGEVQ ENSBTAP00000023359/1-1223 QNGLLSTCRE LSRATAELER AWREYDKLEY DVTVTRNQMQ EQLDRLGEVQ BACU016333/1-349 ---------- ---------- ---------- ---------- ---------- bmy_16146T0/1-824 QNGLLSTCRE LSRATAELER AWREYDKLEY DVTLTRNQMQ EQLDRLGEIQ 851 900 ENSTTRP00000004224/1-1121 TESAGIQRAQ LQKELWRIQD VMEGLSKHKQ QRGTAET-GM IGSKPFSTVK ENSP00000404296/1-1282 TESAGIQRAQ IQKELWRIQD VMEGLSKHKQ QRGTTEI-GM IGSKPFSTVK ENSBTAP00000023359/1-1223 TESAGIQRAQ IQKELWRIQD VMEGLSKHKQ QRGTSETVGM IGSKPFSTVK BACU016333/1-349 ---------- ---------- -MEGLSKHKQ QRGTAET-GM IGSKPFSTVK bmy_16146T0/1-824 TESAGIQRAQ LQKELWRIQD VMEGLSKHKQ QRGTAET-GM IGSKPFSTVK 901 950 ENSTTRP00000004224/1-1121 YKNEEEEVVP PRPPLPRSYD FTDQPPIIPP LPSDSSSLLC YSRGPVHLPE ENSP00000404296/1-1282 YKNEEEEVVP PRPPLPRSYD FTEQPPIIPP LPSDSSSLLC YSRGPVHLPE ENSBTAP00000023359/1-1223 YKNEEEEVVP PRPPLPRSYD FTDQPPIIPP LPSDSSSLLC YSRGPVHLPE BACU016333/1-349 YKNE------ ---------- ---------- ---------- ---------- bmy_16146T0/1-824 YKNEEEEVVP PRPPLPRSYD FTDQPPIIPP LPSDSSSLLC YSRGPVHLPE 951 1000 ENSTTRP00000004224/1-1121 EKKIHQVQGY PRNGSHCGPD YRLYKSEPEL TTVAEVDESN GEEKSESVSE ENSP00000404296/1-1282 EKKMYQVQGY PRNGSHCGPD YRLYKSEPEL TTVAEVDESN GEEKSEPVSE ENSBTAP00000023359/1-1223 EKKIHQVQGY PRNGSHCGPD YRLYKSEPEL TTVAEVDESN GEEKSEPASE BACU016333/1-349 ---------- -------GPD YRLYKSEPEL TTVAEVDESN GEEKSESVSE bmy_16146T0/1-824 EKKIHQVQGY PRNGSHCGPD YRLYKSEPEL TTVAEVDESN GEEKSESVSE 1001 1050 ENSTTRP00000004224/1-1121 METSVK--GS HFPVGVVPPR TKSPTPESST IASYVTLRKT KKMMDSRTER ENSP00000404296/1-1282 IETSVVK-GS HFPVGVVPPR AKSPTPESST IASYVTLRKT KKMMDLRTER ENSBTAP00000023359/1-1223 IETSVKVLGS HFPVGVVPPR TKSPTPESST IASYVTLRKT KKMMDSRTER BACU016333/1-349 METSVK--GS HFPVGVVPPR TKSPTPESST IASYVTLRKT KKMMDARMER bmy_16146T0/1-824 METSVK--GS HFPVGVVPPR TKSPTPESST IASYVTLRKT KKMMDSRTER 1051 1100 ENSTTRP00000004224/1-1121 PRSAVEQLCL AESTRPRMTV EEQMERIRRH QQACLREKKK GLNIIGALDQ ENSP00000404296/1-1282 PRSAVEQLCL AESTRPRMTV EEQMERIRRH QQACLREKKK GLNVIGASDQ ENSBTAP00000023359/1-1223 PRSAVEQLCL AESTRPRMTV EEQMERIRRH QQACLREKKK GLNLIGALDQ BACU016333/1-349 PRSAVEQLCL AESTRPRMTV EEQMERIRRH QQACLREKKK GLNIIGALDQ bmy_16146T0/1-824 PRSAVEQLCL AESTRPRMTV EEQMERIRRH QQACLREKKK GLNIIGALDQ 1101 1150 ENSTTRP00000004224/1-1121 SPLPSPSNLR DNPFRVTQXX XXXX--XXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404296/1-1282 SPLQSPSNLR DNPFRTTQTR RRDD--KELD TAIRENDVKP DHETPATEIV ENSBTAP00000023359/1-1223 SPLPSPSNLR DNPFRITQAR RKDDNSKELD TVIRENDMKP NHDTPATDTV BACU016333/1-349 SPLPSPSNLR DNPFRVTQTR RRDDNLKEPD AVIRENDVKP NHETPAAETV bmy_16146T0/1-824 SPLPSPSNLR DNPFRVTQPR RRDDNLKELD AVIRENDVKP NHETPAAETV 1151 1200 ENSTTRP00000004224/1-1121 XXXXXXXXXX XXXXXFKKTE NAFSETLFTP EPNGVNSEEV VDKEENKEKM ENSP00000404296/1-1282 QLKETEPQNV DFSKELKKTE NISYEMLFEP EPNGVNSVEM MDKERNKDKM ENSBTAP00000023359/1-1223 QLKEAEPQNT DFSGEFKKTE NVFSETLFTP EPNGVNSEEV MDKEGDKKEV BACU016333/1-349 RLKEAEPQNT DFSEEFKKTE NVFSETLFTP EPNGVNSEEV VDKEENKEKM bmy_16146T0/1-824 RLKEAEPQNT DFSEE---DI NIFNVLEY-- ---------- ---------- 1201 1250 ENSTTRP00000004224/1-1121 PKDVPYXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000404296/1-1282 PEDVTFSPQD ETQTANHKPE EHPEENTKNS VDEQEETVIS YESTPEVSRG ENSBTAP00000023359/1-1223 PEHVPYSPQE ESQIPNHKPE GPPAEDTKDD IHEQEENVLS YELTPEASRG BACU016333/1-349 PKDVPCSPQD ESQIPNHKPE GHPEENTKDT IHEQEETVIS YELTPEASRG bmy_16146T0/1-824 --KFICHPQD ESQIPNHKPE GHPEENTKDN IHEQEETVIS YELTPEASRG 1251 1300 ENSTTRP00000004224/1-1121 XXXXXXQSLS PSPESSASPV PSTQPQLTEG SHFMCV ENSP00000404296/1-1282 NQTMAVKSLS PSPESSASPV PSTQPQLTEG SHFMCV ENSBTAP00000023359/1-1223 NQTMAAQSLP PSPDSSASPV PSAQPQLTEG SHFMCV BACU016333/1-349 SQTMAVQSLS PSPESSASPV PSTQPQLTEG SHFMCV bmy_16146T0/1-824 SQTMAVQSLS PSPESSASPV PSTQPQLTEG SHFMCV