KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:31 2014 Check: 00 .. Name: ENSTTRP00000016480/1-917 Len: 1313 Check: 6127 Weight: 1.00 Name: BACU016295/1-785 Len: 1313 Check: 6030 Weight: 1.00 Name: ENSP00000335156/1-963 Len: 1313 Check: 4884 Weight: 1.00 Name: bmy_04624T0/1-502 Len: 1313 Check: 4706 Weight: 1.00 Name: ENSBTAP00000023376/1-1000 Len: 1313 Check: 3229 Weight: 1.00 // 1 50 ENSTTRP00000016480/1-917 ---------- ---------- ---------- ---------- ---------- BACU016295/1-785 ---------- ---------- ---------- ---------- ---------- ENSP00000335156/1-963 MDAPWGAGER WLHGAAVDRS GVSLGPPPTP QVNQGTLGPQ VAPVAAGEVV bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 ---------- ---------- ---------- ---------- ---------V 51 100 ENSTTRP00000016480/1-917 ---------- ---------- ---------- ---------- ---TGAAWGA BACU016295/1-785 ---------- ---------- ---------- ---------- ---------- ENSP00000335156/1-963 KTAGGVCKFS GQRLSWWQAQ ESCEQQFGHL ALQPPDGVLA SRLRDPVWVG bmy_04624T0/1-502 ---------- -QRLSWWQAQ ESCEQRFGHL VLRHPDAVLA PRLPDPIWVG ENSBTAP00000023376/1-1000 ETADEVCKFP GQRLSWWQAQ ESCEQQLGHL VLPPPDELLA AQLPDPIWVG 101 150 ENSTTRP00000016480/1-917 GKRRLHGGMV DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016295/1-785 ---------- ---------- ---------- ---------- ---------- ENSP00000335156/1-963 QREAPLRRPP Q--------- ---------- ---------- ---------- bmy_04624T0/1-502 KREAPLQRPP Q--------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 QREAPLQRPP Q--------- ---------- ---------- ---------- 151 200 ENSTTRP00000016480/1-917 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU016295/1-785 ---------- ---------- ---------- ---------- ---------- ENSP00000335156/1-963 ---------- ---------- ---------- ---------- ---------- bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000016480/1-917 XXXXXXARTA AALTFGERTA GQAAWLQTPL PALGALTACV HVQWNAASSD BACU016295/1-785 ---------- ---------- -MAAHLDSP- --------C- -----GLSPE ENSP00000335156/1-963 ----RRARTT AVLVFDERTA DRAARLRSPL PELAALTACT HVQWDCASPD bmy_04624T0/1-502 ----RRARTA AAQMFGEKTA DRAAWLRTPL PAHGALTACA HVQWNAASPD ENSBTAP00000023376/1-1000 ----RRARST ATLMFSERSA DRAARLRTPL PALGALTACA HVQWDATSSD 251 300 ENSTTRP00000016480/1-917 AAALFSLAVP ALANALQLRA FAEPGGAAHA ALAVREHHAP FRAAFRADGR BACU016295/1-785 EVRIAS---- ---------- ---------- -------QVP LS-------- ENSP00000335156/1-963 PAALFSVAAP ALPNALQLRA FAEPGGVVRA ALVVRGQHAP FLAAFRADGR bmy_04624T0/1-502 AAALCSLAVP ALANALQLRA FAEPGGAMHA ALAVRGHHAP FRAAFRADGR ENSBTAP00000023376/1-1000 PAALFSLAVP TLANALQLRA FAEPGGAVHA ALVVRGHHAP FRAAFRADGR 301 350 ENSTTRP00000016480/1-917 WHHVCATWEQ LGGRWALFAD GRRRAGMRGL GASHPLPPGG ILVLGQDQDS BACU016295/1-785 -------WTE ---------- -SRRA----- ---------- ---------- ENSP00000335156/1-963 WHHVCATWEQ RGGRWALFSD GRRRAGARGL GAGHPVPSGG ILVLGQDQDS bmy_04624T0/1-502 WHHVCATWEQ LCGRWSLFAD GRRRAGARGL GAGHPLPPGG IL-------- ENSBTAP00000023376/1-1000 WHHVCVTWEQ LGGRWSLFAD GRRRSGARGL GAGHPLPPDG ILVLGQDQDS 351 400 ENSTTRP00000016480/1-917 LGGGF-ARDA FSGNLTDFHL WARALSPAQL HRARACAPSP -------GGL BACU016295/1-785 ---------- ---------- ---------- -------PPA -------GGL ENSP00000335156/1-963 LGGGFSVRHA LSGNLTDFHL WARALSPAQL HRARACAPPS -------EGL bmy_04624T0/1-502 ------ARDA FSGNLTDFHL WARALSPAQL HRARACAPLP PPAACSCAGI ENSBTAP00000023376/1-1000 LGGGFSARDA FSGNLTDFHL WARALSPGQM HRARACAPPP -------GGL 401 450 ENSTTRP00000016480/1-917 LFRW------ ------DLGA LDVTPSLLPP VRVQLLCLVP S-ECPT-DPG BACU016295/1-785 LLRW------ ------DLGA LDVTPSLLPP VRMPLLCPVP SEECPTWDPG ENSP00000335156/1-963 LFRW------ ------DPGA LDVTPSLLPT VWVRLLCPVP SEECPTWNPG bmy_04624T0/1-502 WAPWTSHPRC YRRCGCGFSV RDAALTPLPS -W-----PVP SEECPTWDPG ENSBTAP00000023376/1-1000 LFRW------ ------DLGA LDVTPSLLPP VWVRLLCPVP SEECPSWDPA 451 500 ENSTTRP00000016480/1-917 PRTEGFLFCL QPLHFLCCYR TETYQQLQDA QSWSGQDVIS QVNALANAIV BACU016295/1-785 PRTEGFLFCL QPLPFLCCYR TETYQQLQDA QSWSGQDVIS QVNALANAIV ENSP00000335156/1-963 PRSEGSELCL EPQPFLCCYR TEPYRRLQDA QSWPGQDVIS RVNALANDIV bmy_04624T0/1-502 PRTECFLFCL QPLPFLCCYR TETYQQLQDA QSWSGQDVIS QVNALANAIL ENSBTAP00000023376/1-1000 PHTEGSLLCL QPLPFLCCYR TEKYRRLQDA QSWPGQDVIS RVNALANAIV 501 550 ENSTTRP00000016480/1-917 LLPDP----- ---------- ---------- ---------- LSEAHGDLSL BACU016295/1-785 LDPHPPRRLA EAKYSPLRGF PLRQSDQQSA APLLHSSSRT LSLKPTELSL ENSP00000335156/1-963 LLPDP----- ---------- ---------- ---------- LSEVHGALSP bmy_04624T0/1-502 LL-DP----- ---------- ---------- ---------- LSEAHGDLSL ENSBTAP00000023376/1-1000 LLPDP----- ---------- ---------- ---------- LSEAHGDLSL 551 600 ENSTTRP00000016480/1-917 AEASSFLGIL ERV---LTKE TAPLGPAALL AVMHFLKSVA ALGTWEPE-P BACU016295/1-785 AEASNFLGIL ERLPAGLAKE TAPLGPAALL AGMHFLKKVA ALGTWEPE-P ENSP00000335156/1-963 AEASSFLGLL EHV---LAME MAPLGPAALL AVVRFLKRVV ALGAGDPELL bmy_04624T0/1-502 AEASSFLGIL ERV---LAKE TAPLGPAALL AGMHFLKRVA ALGTWEPE-P ENSBTAP00000023376/1-1000 TEAANFLRIL EGV---LAKE AAPLGPAALL AVLHFLKRVA ALGTWEPE-P 601 650 ENSTTRP00000016480/1-917 MTRPWEQLGQ AVVSGASLVL EEQQAGV--- WLSVSEXX-- ---------- BACU016295/1-785 MTGPWEQLGQ AVVSVASLVL EEQLAGLELQ SLHLRETSTK GQVFTMPGGH ENSP00000335156/1-963 LTGPWEQLSQ GVVSVASLVL EEQVADT--- WLSLREVI-- ---------- bmy_04624T0/1-502 MTGPWEQLGQ AVVV------ ---------- ---------- ---------- ENSBTAP00000023376/1-1000 TTGPWEQLGQ AVMSVASLVL EEPLAGV--- WLSVSEVA-- ---------- 651 700 ENSTTRP00000016480/1-917 -XXXXXXXXX XXXXXXXXXX ------XXXX XXXXXXXXXX XX-------- BACU016295/1-785 PEGPGHILIP AAEVRQLLRK RGTNLWCLLS HWAGLRPPSI HP-------- ENSP00000335156/1-963 -GGPMALVAS VQRLAPLLST ------SMTS ERPRMRIQHR HA-------- bmy_04624T0/1-502 -GGPRALVAS VQRLAPLLST ------MLTS ERPERTPSTT MP-------- ENSBTAP00000023376/1-1000 -GGPMALVAS VQRLAPLLNS ------VLTS ERPRMHLQHR HAGLEVRRLH 701 750 ENSTTRP00000016480/1-917 ---------- ---------- ---------- -------XLS GVTMIHSWFS BACU016295/1-785 ---------- ---------- ---------- -------GLS GVTMIRSWFS ENSP00000335156/1-963 ---------- ---------- ---------- -------GLS GVTVIHSWFT bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 LREASTEGYV FTVPGGHPEG PGHILIPAAE VRRLLGKGLS GVTVIHSWFS 751 800 ENSTTRP00000016480/1-917 SSVFQYTLGA PGREPQAPDT SEEASRMQRF LSTQVGSAII SSEVWDETGE BACU016295/1-785 SSVFQYTLGA PGREPQAPDT SEEASRMHRF LSTQVGSAII SSEVWDETGE ENSP00000335156/1-963 SRVFQHTLEG PDLEPQAPAS SEEANRVQRF LSTQVGSAII SSEVWDVTGE bmy_04624T0/1-502 -----YTLGA PGREPQAPDT SEEASRMHRF LSTQVGSAII SSEVWDETGE ENSBTAP00000023376/1-1000 SSVFQHTLGA PDQEPRAPDS SEETSRMQRF LSTQVGSAII SSEVWDETGE 801 850 ENSTTRP00000016480/1-917 PNTAVTFHLQ HWAQSPLFTI ---------- --PSPDSGGS WATTGCSVTA BACU016295/1-785 ANTAVTFHLQ HWAQ-AFPPK LVEPVCAFWN FSIGPDSGGS WTTTGCSVTA ENSP00000335156/1-963 VNVAMTFHLQ HRAQSPLFPP ---------- HPPSPYTGGA WATTGCSVAA bmy_04624T0/1-502 ANTALTFHLQ R--------- ---------- ---------- WAQ------- ENSBTAP00000023376/1-1000 ANTAVTFHLQ HQAQLAFPPK LVEPVCAFWN FSISPDSGGS WATTGCSVTA 851 900 ENSTTRP00000016480/1-917 LYQDSTTCFC NHS---AVLL QVYDVQRGPD GASLLRTLSS VGCVCCLAT- BACU016295/1-785 LCQDSTACFC NHSANFAVLL QVYDVQ---- ---------- ---------- ENSP00000335156/1-963 LYLDSTACFC NHSTSFAILL QIYEVQRGPE EESLLRTLSF VGCGVSFCAL bmy_04624T0/1-502 ----SVVCFS DY-------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 MYQGSTACFC NHSTNFAVLL QVYDVQRGPE EESLLRTLSF VGCGVSFCAL 901 950 ENSTTRP00000016480/1-917 -----LLLAA AXXXXXXXXX XXXXXXXXXX XXXXXXXXEW AKANKLACVA BACU016295/1-785 ---------- ----SERATV HKNPTFSLAS TEGFLVASEW AKANKVACVA ENSP00000335156/1-963 TTTFLLFLVA GVPKSERTTV HKNLTFSLAS AEGFLMTSEW AKANEVACVA bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 STTFLLFLAA GVPRSERATV HKNLTFSLAS AEGFLMASEW AKANKVACLA 951 1000 ENSTTRP00000016480/1-917 VTAVMHLLFL VVFSWMLAEG LPLCSKVVAV RMRLGPRKPL CYATGWGVPV BACU016295/1-785 VTAVIHLLFL VAFSWMLAEG LPLCSKVVVV SMRPGPRKPL CYATGWGMPV ENSP00000335156/1-963 VTVAMHFLFL VAFSWMLVEG LLLWRKVVAV SMHPGPGMRL YHATGWGVPV bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 VTAVMHLLFL VAFFWMLVEG LLLWSKVVAV SMRPGPRMPL YYATGWGVPV 1001 1050 ENSTTRP00000016480/1-917 AMVAITLAVS RHDYVATGHC QLNVHTDAIW AFVGPVLA-- ---------- BACU016295/1-785 AIVAITLAVS PRDYVATGHC WLNVHTDAIW VFVGPVLSGL TVSGEAWRPC ENSP00000335156/1-963 GIVAVTLAML PHDYVAPGHC WLNVHTNAIW AFVGPVLFVL T--------- bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 AIVAISLAMS PRDYVATGHC WLNVHTDAIW AFVGPVLFVL T--------- 1051 1100 ENSTTRP00000016480/1-917 ---------- ---------A NTCILVRVVI VTVSRARRRA RTLSPQPCVQ BACU016295/1-785 RGGMCRGRGR VSPLTPDLQA NTCILVRVVI VTMSSAHRRA HTLNPQPCVQ ENSP00000335156/1-963 ---------- ---------A NTCILARVVM ITVSSARRRA RMLSPQPCLQ bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 ---------- ---------A NTCILVRVVI VTVSSARCRA RMLSPQPCMQ 1101 1150 ENSTTRP00000016480/1-917 QQIPIQMWAT VKPVLVLLPI LSLTWLVSML VHLSPAWAYA TVGLNSLQGP BACU016295/1-785 QQIQIQMW-- ---------- ---------- ---------- --------GP ENSP00000335156/1-963 QQIWTQIWAT VKPVLVLLPV LGLTWLAGIL VHLSPAWAYA AVGLNSIQGL bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 QQLRIQMWAT VKPVLVLLPV LGLTWLVGVL VHLSPAWAYA AVGLNSLQGP 1151 1200 ENSTTRP00000016480/1-917 YIFLVYAAYN GEVQSVLQRM TEKAAAEAFR APGVRGGQAW ---------- BACU016295/1-785 YIFLVYAAYN GEVQSALQRM TEKKAVEAFT KGCGEFPKA- ---------- ENSP00000335156/1-963 YIFLVYAACN EEVRSALQRM AEKKVAEVLR ALGVWGGAA- ---------- bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 YIFLVYAAYN GEVRSALRRM TEKKAAEAFT ARSSPTGPGF HSRPSCPWEV 1201 1250 ENSTTRP00000016480/1-917 ---------- ---------- ---------- ---------- ---------- BACU016295/1-785 ---------- --------GT HGPRIPTAFS STAEPERPAV ELTAFKASGV ENSP00000335156/1-963 ---------- ---------- KEHSLPFSVL PLFLPPKPST PRHPLKAPA- bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 ARDDPRVLAP PQRHLALRGT HGPRIPTTFS SIAEPERPAV ELTAFKASGT 1251 1300 ENSTTRP00000016480/1-917 ---------- ---------- ---------- ---------- ---------- BACU016295/1-785 APTSGGSPFP FGVPTPPQPH CTGMEVIREA TTADLPQFEG LFPSLRSLLV ENSP00000335156/1-963 ---------- ---------- ---------- ---------- ---------- bmy_04624T0/1-502 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000023376/1-1000 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000016480/1-917 ---------- --- BACU016295/1-785 PESPPLAPRG LCQ ENSP00000335156/1-963 ---------- --- bmy_04624T0/1-502 ---------- --- ENSBTAP00000023376/1-1000 ---------- ---