KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:20:34 2014 Check: 00 .. Name: ENSBTAP00000023384/1-912 Len: 1049 Check: 3115 Weight: 1.00 Name: ENSTTRP00000005576/1-913 Len: 1049 Check: 3910 Weight: 1.00 Name: bmy_00793T0/1-1009 Len: 1049 Check: 9635 Weight: 1.00 Name: BACU011901/1-913 Len: 1049 Check: 3206 Weight: 1.00 // 1 50 ENSBTAP00000023384/1-912 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005576/1-913 ---------- ---------- ---------- ---------- ---------- bmy_00793T0/1-1009 MSRPPPRGQV YCRPDPAPCE ARGPLGVVVS QYSSSASPGS DAKVPPSPRR BACU011901/1-913 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000023384/1-912 ---------- ---------- --------MS RFFTTGSDSE SESSLSGEEL ENSTTRP00000005576/1-913 ---------- ---------- --------MS RFFTTGSDSE SESSLSGEEL bmy_00793T0/1-1009 VSAASVKWCD SGGQQVWPRP PQPLSAVAMS RFFTTGSDSE SESSLSGEEL BACU011901/1-913 ---------- ---------- --------MS RFFTTGSDSE SESSLSGEEL 101 150 ENSBTAP00000023384/1-912 VTKPVGGNYG KQPLLLSEDE EDTKRVVRSA KDKRFEELTN LIRTIRNAMK ENSTTRP00000005576/1-913 VTKPVGGNYG KQPLLLSEDE EDTKRVVRSA KDKRFEELTN LIRTIRNAMK bmy_00793T0/1-1009 VTKPVGGNYG KQPLLLSEDE EDTKRVVRSA KDKRFEELTN LIRTIRNAMK BACU011901/1-913 VTKPVGGNYG KQPLLLSEDE EDTKRVVRSA KDKRFEELTN LIRTIRNAMK 151 200 ENSBTAP00000023384/1-912 IRDVTKCLEE FELLGKAYGK AKSIVDKEGV PRFYIRILAD LEDYLNELWE ENSTTRP00000005576/1-913 IRDVTKCLEE FELLGKAYGK AKSIVDKEGV PRFYIRILAD LEDYLNELWE bmy_00793T0/1-1009 IRDVTKCLEE FELLGKAYGK AKSIVDKEGV PRFYIRILAD LEDYLNELWE BACU011901/1-913 IRDVTKCLEE FELLGKAYGK AKSIVDKEGV PRFYIRILAD LEDYLNELWE 201 250 ENSBTAP00000023384/1-912 DKEGKKKMNK NNAKALSTLR QKIRKYNRDF ESHITNYKQN PEQSADEDAE ENSTTRP00000005576/1-913 DKEGKKKMNK NNAKALSTLR QKIRKYNRDF ESHITNYKQN PEQSADEDAE bmy_00793T0/1-1009 DKEGKKKMNK NNAKALSTLR QKIRKYNRDF ESHITNYKQN PEQSADEDAE BACU011901/1-913 DKEGKKKMNK NNAKALSTLR QKIRKYNRDF ESHITNYKQN PEQSADEDAE 251 300 ENSBTAP00000023384/1-912 KNEEDSEGSS DEDEDDDGVT AAAFLKKKSE APSGDSRKFL KK-EDEDEDS ENSTTRP00000005576/1-913 KNEEDSEGSS DEDEDDEGVS ASTFLKKKSE APSSESRKFL KKMEDEDEDS bmy_00793T0/1-1009 KNEEDSEGSS DEDEDDEGVS AAAFLKKKSE APSGESRKFF KKMEDEDEDS BACU011901/1-913 KNEEDSEGSS DEDEDDEGVS AAAFLKKKSE APSGESRKFL KKMEDEDEDS 301 350 ENSBTAP00000023384/1-912 EESEDSEAWD TSSTSSDSDS EEEEGKQTVL ASRFLKK--- ---------- ENSTTRP00000005576/1-913 EDSEDDEDWD TGSTSSDSDS EEEEGKQTVL ASRFLKK--- ---------- bmy_00793T0/1-1009 EDSEDDEDWD TGSTSSDSDS EEEEGKQTVL ASRFLKKIYI NNFHKRGKKG BACU011901/1-913 EDSEDDEDWD TGSTSSDSDS EEEEGKQTVL ASRFLKK--- ---------- 351 400 ENSBTAP00000023384/1-912 ---------- ---------- ---------- ---------- -----APTTE ENSTTRP00000005576/1-913 ---------- ---------- ---------- ---------- -----APTTE bmy_00793T0/1-1009 REKQPVILVE CNLDPGREKE EFRGRKKPQG GEGADPSSSP VSLGRAPTTE BACU011901/1-913 ---------- ---------- ---------- ---------- -----APTTE 401 450 ENSBTAP00000023384/1-912 EDKKAAEKKR EDKAKKKHDR KSRRPDEEEE DNEGGEWERV RGGVPLVKEK ENSTTRP00000005576/1-913 EDKKAAEKKR EDKAKKKHDR KSKRLDEEEE DNEGGEWERV RGGVPLVKEK bmy_00793T0/1-1009 EDKKAAEKKR EDKAKKKHDR KSKRLDEEEE DNEGGEWERV RGGVPLVKEK BACU011901/1-913 EDKKAAEKKR EDKAKKKHDR KSKRLDEEEE DNEGGEWERV RGGVPLVKEK 451 500 ENSBTAP00000023384/1-912 PKMFAKGTEI THAVVIKKLN EILQARGKKG TDRAAQIELL QLLVQIASEN ENSTTRP00000005576/1-913 PKMFAKGTEI THAVVIKKLN EILQARGKKG TDRAAQIELL QLLVQIASEN bmy_00793T0/1-1009 PKMFAKGTEI THAVVIKKLN EILQARGKKG TDRAAQIELL QLLVQIASEN BACU011901/1-913 PKMFAKGTEI THAVVIKKLN EILQARGKKG TDRAAQIELL QLLVQIASEN 501 550 ENSBTAP00000023384/1-912 NLGEGVIVKI KFNIIASLYD YNPNLATYMK PEMWQKCLDC INELMDILFA ENSTTRP00000005576/1-913 NLGEGVIVKI KFNIIASLYD YNPNLATYMK PEMWQKCLDC INELMDILFA bmy_00793T0/1-1009 NLGEGVTVKI KFNIIASLYD YNPNLATYMK PEMWQKCLDC INELMDILFA BACU011901/1-913 NLGEGVTVKI KFNIIASLYD YNPNLATYMK PEMWQKCLDC INELMDILFA 551 600 ENSBTAP00000023384/1-912 NPNIFVGENI LEESENLHNA DQPLRVRGCI LTLVERMDEE FTKIMQNTDP ENSTTRP00000005576/1-913 NPNIFVGENI LEESENLQNA DQPLRVRGCI LTLVERMDEE FTKIMQNTDP bmy_00793T0/1-1009 NPNIFVGENI LEESENLHNA DQPLRVRGCI LTLVERMDEE FTKIMQNTDP BACU011901/1-913 NPNIFVGENI LEESENLHNA DQPLRVRGCI LTLVERMDEE FTKIMQNTDP 601 650 ENSBTAP00000023384/1-912 HSQEYVEHLK DEAQVCAIIE RVQRYLEEKG TTEEVCRIYL RRILHTYYKF ENSTTRP00000005576/1-913 HSQEYVEHLK DEAQVCTIIE RVQRYLEEKG TTDEICRIYL RRILHTYYKF bmy_00793T0/1-1009 HSQEYVEHLK DEAQVCTIID RVQRYLEEKG TTDEICRIYL RRILHTYYKF BACU011901/1-913 HSQEYVEHLK DEAQVCTIIE RVQRYLEEKG TTDEICRVYL RRILHTYYKF 651 700 ENSBTAP00000023384/1-912 DYKAHQRQLT PPEGSSKSEQ DQAENEGEDS AVLMERLCKY IYAKDRTDRI ENSTTRP00000005576/1-913 DYKAHQRQLT PPEGSSKSEQ DQAENEGEDS AVLMERLCKY IYAKDRTDRI bmy_00793T0/1-1009 DYKAHQRQLT PPEGSSKSEQ DQAENEGEDS AVLMERLCKY IYAKDRTDRI BACU011901/1-913 DYKAHQRQLT PPEGSSKSEQ DQAENEGEDS AVLMERLCKY IYAKDRTDRI 701 750 ENSBTAP00000023384/1-912 RTCAILCHIY HHALHSRWYQ ARDLMLMSHL QDNIQHADPP VQILYNRTMV ENSTTRP00000005576/1-913 RTCAILCHIY HHALHSRWYQ ARDLMLMSHL QDNIQHADPP VQILYNRTMV bmy_00793T0/1-1009 RTCAILCHIY HHALHSRWYQ ARDLMLMSHL QDNIQHADPP V--------- BACU011901/1-913 RTCAILCHIY HHALHSRWYQ ARDLMLMSHL QDNIQHADPP VQILYNRTMV 751 800 ENSBTAP00000023384/1-912 QLGICAFRQG LTKDAHNALL DIQSSGRAKE LLGQGLLLRS LQERNQEQEK ENSTTRP00000005576/1-913 QLGICAFRQG LTKDAHNALL DIQSSGRAKE LLGQGLLLRS LQERNQEQEK bmy_00793T0/1-1009 --------QG LTKDAHNALL DIQSSGRAKE LLGQGLLLRS LQERNQEQEK BACU011901/1-913 QLGICAFRQG LTKDAHNALL DIQSSGRAKE LLGQGLLLRS LQERNQEQEK 801 850 ENSBTAP00000023384/1-912 VERRRQVPFH LHINLELLEC VYLVSAMLLE IPYMAAHESD ARRRMISKQF ENSTTRP00000005576/1-913 VERRRQVPFH LHINLELLEC VYLVSAMLLE IPYMAAHESD ARRRMISKQF bmy_00793T0/1-1009 VERRRQVPFH LHINLELLEC VYLVSAMLLE IPYMAAHESD ARRRMISKQF BACU011901/1-913 VERRRQVPFH LHINLELLEC VYLVSAMLLE IPYMAAHESD ARRRMISKQF 851 900 ENSBTAP00000023384/1-912 HHQLRVGERQ PLLGPPESMR EHVVAASKAM KMGDWKTCHS FIINEKMNGK ENSTTRP00000005576/1-913 HHQLRVGERQ PLLGPPESMR EHVVAASKAM KMGDWKTCHS FIINEKMNGK bmy_00793T0/1-1009 HHQLR----- ---------- --------AM KMGDWKTCHS FIINEKMNGK BACU011901/1-913 HHQLRVGERQ PLLGPPESMR EHVVAASKAM KMGDWKTCHS FIINEKMNGK 901 950 ENSBTAP00000023384/1-912 VWDLFPEADK VRTMLVRKIQ EESLRTYLFT YSSVYDSISM ETLSDMFELD ENSTTRP00000005576/1-913 VWDLFPEADK VRSMLVRKIQ EESLRTYLFT YSSVYDSISM ETLSDMFELD bmy_00793T0/1-1009 VWDLFPEADK VRSMLVRKIQ EESLRTYLFT YSSVYDSISM ETLSDMFELD BACU011901/1-913 VWDLFPEADK VRSMLVRKIQ EESLRTYLFT YSSVYDSISM ETLSDMFELD 951 1000 ENSBTAP00000023384/1-912 LPTVHSIISK MIINEELMAS LDQPTQTVVM HRTEPTAQQN LALQLAEKLG ENSTTRP00000005576/1-913 LPTVHSIISK MIINEELMAS LDQPTQTVVM HRTEPTAQQN LALQLAEKLG bmy_00793T0/1-1009 LPTVHSIISK MIINEELMAS LDQPTQTVVM HRTEPTAQQN LALQLAEKLG BACU011901/1-913 LPTVHSIISK MIINEELMAS LDQPTQTVVM HRTEPTAQQN LALQLAEKLG 1001 1050 ENSBTAP00000023384/1-912 SLVENNERVF DHKQGTYGGY FRDQKDGYRK NEGYMRRGGY RQQQSQTAY ENSTTRP00000005576/1-913 SLVENNERVF DHKQGTYGGY FRDQKDGYRK NEGYMRRGGY RQQQSQTAY bmy_00793T0/1-1009 SLVENNERVF DHKQGTYGGY FRDQKDGYRK NEGYMRRGGY RQQQSQTAY BACU011901/1-913 SLVENNERVF DHKQGTYGGY FRDQKDGYRK NEGYMRRGGY RQQQSQTAY