KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:35 2014 Check: 00 .. Name: ENSP00000312222/1-956 Len: 1011 Check: 526 Weight: 1.00 Name: ENSBTAP00000023393/1-944 Len: 1011 Check: 7726 Weight: 1.00 Name: BACU015492/1-1007 Len: 1011 Check: 7600 Weight: 1.00 Name: ENSTTRP00000002518/1-952 Len: 1011 Check: 2882 Weight: 1.00 Name: bmy_07291T0/1-1007 Len: 1011 Check: 2673 Weight: 1.00 // 1 50 ENSP00000312222/1-956 MASKRKSTTP CMIPVKTVVL QDASMEAQPA ETLPEGPQQD LPPEASAASS ENSBTAP00000023393/1-944 MASKRKSTTP CMIPVKTVVL PGSSAEAPPA EPGPEGPPQE PPPEAPATST BACU015492/1-1007 MASKRKSTTP CMIPVKTVVL QDTGAEAPPA EPVPEGPPQE PPPAVPTASG ENSTTRP00000002518/1-952 MASKRKSTTP CMIPVKTVVL QDTGAEALPE EPVPEGPPQE PPPEAPTASS bmy_07291T0/1-1007 MASKRKSTTP CMIPVKTVVL QDPGAEAPPA EPVPEGPPQE PPPEAPTASG 51 100 ENSP00000312222/1-956 EAAQNPSSTD GSTLANGHRS TLDGYLYSCK YCDFRSHDMT QFVGHMNSEH ENSBTAP00000023393/1-944 EATQGASGPD VPSLANGHRG TLDGYAYACK YCDFRSQDIT QFVGHLSSEH BACU015492/1-1007 EATQGTSSPD SAALANGHRS TLDGYTYACK CCDFRSQDIT RFVGHLSSEH ENSTTRP00000002518/1-952 EATQGTSSPD SAALANGHRS TLDGYTYACK CCDFRSQDIT RFVGHLSSEH bmy_07291T0/1-1007 EATQGASSPD SAALANGHRS TLDGYTYACK CCDFRSQDIT RFVGHLSSEH 101 150 ENSP00000312222/1-956 TDFNKDPTFV CSGCSFLAKT PEGLSLHNAT CHSGEASFVW NVAKPDNHVV ENSBTAP00000023393/1-944 TDFNKDPSFV CTECSFLAKT PEGLSLHNAK CHSGEANFVW NVTKPDNHVV BACU015492/1-1007 TDFSKDPNFV CTECSFLAKT PEGLSLHNAK CHSGEASFVW NVAKPDNHVV ENSTTRP00000002518/1-952 TDFSKDPNFV CTECSFLAKT PEGLSLHNAK CHSGEASFVW NVAKPDNHVV bmy_07291T0/1-1007 TDFSKDPNFV CTECSFLAKT PEGLSLHNAK CHSGEASFVW NVAKPDNHVV 151 200 ENSP00000312222/1-956 VEQSIPESTS TPDLAGEPSA EGADGQAEII ITKTPIMKIM KGKAEAKKIH ENSBTAP00000023393/1-944 VEQSVPEGGS PPDLSGEPNV EGMDGQAEII ITKTPIMKIM KGKAEAKKIH BACU015492/1-1007 VEQSVPESTS PPDPSGEPNM EGTDGQAEII ITKTPIMKIM KGKAEAKKIH ENSTTRP00000002518/1-952 VEQSVPESTS PPDPSGEPNM EGTDGQAEII ITKTPIMKIM KGKAEAKKIH bmy_07291T0/1-1007 VEQSVPESTS PPDPSGEPNM EGTDGQAEII ITKTPIMKIM KGKAEAKKIH 201 250 ENSP00000312222/1-956 TLKENVPSQP VGEALPKLST GEMEVREGDH SFINGAVPVS QASASSAKNP ENSBTAP00000023393/1-944 TLKENVPNQP TGDALPNPPA GDTEVKEGDH ASVNGAAPSS QASTNPAKPP BACU015492/1-1007 TLKENVPSQP SGEALPNPSS GDTEVKEGDH AFVNGAAPVS QASTNSAKPP ENSTTRP00000002518/1-952 TLKENVPSQP AGEALPTPSA GDTEVKEGDH AFVNGAAPVS QASTNSAKPP bmy_07291T0/1-1007 TLKENVPSQP TGEALPNPSA GDTEVKEGDH AFVNGAAPVS QASTNSAKPP 251 300 ENSP00000312222/1-956 HAANGPLIGT VPVLPAGIAQ FLSLQQQPPV HAQHHVHQPL PTAKALPKVM ENSBTAP00000023393/1-944 HSANGPLLGT VPVLPAGIAQ LLSLQQPPP- QAQ----QPL PTARSLPKVM BACU015492/1-1007 HSANGPLLGT VPVLPAGIAQ FLSLQQPPP- HAQHHAHQPL PTAKSLPKVM ENSTTRP00000002518/1-952 HSANGPLLGT VPVLPAGIAQ FLSLQQPPP- HAQHHAHQPL PTAKSLPKVM bmy_07291T0/1-1007 HSANGPLLGT VPVLPAGIAQ FLSLQQPPP- HAQHHAHQPL PTAKSLPKVM 301 350 ENSP00000312222/1-956 IPLSSIPTYN AAMDSNSFLK NSFHKFPYPT KAELCYLTVV TKYPEEQLKI ENSBTAP00000023393/1-944 IPLSSIPTYN AAMDSNSFLK NSFHKFPYPT KAELCYLTVV TKYPEEQLKI BACU015492/1-1007 IPLSSIPTYN AAMDSNSFLK NSFHKFPYPT KAELCYLTVV TKYPEEQLKI ENSTTRP00000002518/1-952 IPLSSIPTYN AAMDSNSFLK NSFHKFPYPT KAELCYLTVV TKYPEEQLKI bmy_07291T0/1-1007 IPLSSIPTYN AAMDSNSFLK NSFHKFPYPT KAELCYLTVV TKYPEEQLKI 351 400 ENSP00000312222/1-956 WFTAQRLKQG ISWSPEEIED ARKKMFNTVI QSVPQPTITV LNTPLVASAG ENSBTAP00000023393/1-944 WFTAQRLKQG ISWSPEEIED ARKKMFNTVI QSVPQPTITV LNTPLVASSG BACU015492/1-1007 WFTAQRLKQG ISWSPEEIED ARKKMFNTVI QSVPQPTITV LNTPLVASGG ENSTTRP00000002518/1-952 WFTAQRLKQG ISWSPEEIED ARKKMFNTVI QSVPQPTITV LNTPLVASGG bmy_07291T0/1-1007 WFTAQRLKQG ISWSPEEIED ARKKMFNTVI QSVPQPTITV LNTPLVASGG 401 450 ENSP00000312222/1-956 NVQHLIQAAL PGHVVGQPEG TGGGLLVTQP LMANGLQATS SPLPLTVTSV ENSBTAP00000023393/1-944 NVQHLIQAAL PGHVVGQPEG TAGGLLVTQP LMANGLQAPS SALPLAVTSV BACU015492/1-1007 NVQHLVQPTL PGHVVGQPEG TAGGLLVTQP LMANGLQAPS SSLPLAVTSV ENSTTRP00000002518/1-952 NVQHLIQPTL PGHVVGQPEG TAGGLLVTQP LMANGLQAPS SSLPLAVTSV bmy_07291T0/1-1007 NVQHLVQPTL PGHVVGQPEG TAGGLLVTQP LMANGLQAPS SSLPLAVTSV 451 500 ENSP00000312222/1-956 PKQPGVAPIN TVCSNTTSAV KVVNAAQSLL TACPSITSQA FLDASIYKNK ENSBTAP00000023393/1-944 PKPPAVAPIN TVCSNTTSAV KVVNAAQSLL TACPSITSQA FLDASIYKNK BACU015492/1-1007 PKLPAVAPIN TVCSNTTSAV KVVNAAQSLL TACPSITSQA FLDASIYKNK ENSTTRP00000002518/1-952 PKLPAVAPIN TVCSNTTSAV KVVNAAQSLL TACPSITSQA FLDASIYKNK bmy_07291T0/1-1007 PKLPAVAPIN TVCSNTTSAV KVVNAAQSLL TACPSITSQA FLDASIYKNK 501 550 ENSP00000312222/1-956 KSHEQLSALK GSFCRNQFPG QSEVEHLTKV TGLSTREVRK WFSDRRYHCR ENSBTAP00000023393/1-944 KSHEQLSALK GSFCRNQFPG QSEVEHLTKV TGLSAREVRK WFSDRRYHCR BACU015492/1-1007 KSHEQLSALK GSFCRNQFPG QSEVEHLTKV TGLSTREVRK WFSDRRYHCR ENSTTRP00000002518/1-952 KSHEQLSALK GSFCRNQFPG QSEVEHLTKV TGLSTREVRK WFSDRRYHCR bmy_07291T0/1-1007 KSHEQLSALK GSFCRNQFPG QSEVEHLTKV TGLSTREVRK WFSDRRYHCR 551 600 ENSP00000312222/1-956 NLKGSRAMIP GDHSSIIIDS VPEVSFSPSS KVPEVTCIPT TATLATHPSA ENSBTAP00000023393/1-944 NLKGARAALS GEHGSLLVDP VPEAPFSPPC KAPEVTCLPT AATLATPPSA BACU015492/1-1007 NLKGSRAGLA GEHGTLLVDS VPEVPFSLAS KAPEVTCLLT AATPATPPSA ENSTTRP00000002518/1-952 NLKGSRAGLA GEHGALLVDS VPEVPFSLAS KAPEVTCLLT AATPATPPSA bmy_07291T0/1-1007 NLKGSRAGLA GEHGALLVDS VPEVPFSLAS KAPEVTCLLT AATPATPPSA 601 650 ENSP00000312222/1-956 KRQSWHQTPD FTPTKYKERA PEQLRALESS FAQNPLPLDE ELDRLRSETK ENSBTAP00000023393/1-944 KRQSWHQTPD FTPTKYKERA PEQLRALESS FAQNPLPLDE ELDRLRTETK BACU015492/1-1007 KRQSWHQTPD FTPTKYKERA PEQLRALENS FAQNPLPLDE ELDRLRTETK ENSTTRP00000002518/1-952 KRQSWHQTPD FTPTKYKERA PEQLRALENS FAQNPLPLDE ELDRLRTETK bmy_07291T0/1-1007 KRQSWHQTPD FTPTKYKERA PEQLRALENS FAQNPLPLDE ELDRLRTETK 651 700 ENSP00000312222/1-956 MTRREIDSWF SERRKKVNAE ETKKAEENAS QEEEEAAEDE GGEEDLASEL ENSBTAP00000023393/1-944 MTRREIDGWF SERRKKVSAE EAKKAEEGAS PGEEEAAETE -GEEGLA--- BACU015492/1-1007 MTRREIDGWF SERRKKVSAE EAKKAEEGAS QGEEEAAEDE -GEEGSARDP ENSTTRP00000002518/1-952 MTRREIDGWF SERRKKVSAE EAKKAEEGAS QGEEEAAEDE -GEEGSARDP bmy_07291T0/1-1007 MTRREIDGWF SERRKKVSAE EAKKAEEGTS QGEEEAAEDE -GEEGSARDP 701 750 ENSP00000312222/1-956 RVSGENGSLE MPSSHILAER KVSPIKINLK NLRVTEANGR NEIPGLGACD ENSBTAP00000023393/1-944 ---GENGSPE VPGGHTLAER KVSPIKINLK NLRVTEANGR GELVGLGICE BACU015492/1-1007 RVPGEDGSLE APGSHVLAER KVSPIKINLR NLRVTEANGK GELPGLGTCE ENSTTRP00000002518/1-952 RVPGEDGSPE TPGSHVLAER KVSPIKINLK NLRVTEANGK GELPGLGACE bmy_07291T0/1-1007 RVPGEDGSLE APGSHVLAER KVSPIKINLK NLRVTEANGK GELPGLGACE 751 800 ENSP00000312222/1-956 PEDDESNKLA EQLPGKVSCK KTAQQRHLLR QLFVQTQWPS NQDYDSIMAQ ENSBTAP00000023393/1-944 PEDEAPGKLA EQPPGKAGCK KTAQQRHLLR QLFVQTQWPS TQDYGSIVAQ BACU015492/1-1007 PEDDTPSKPA EQLPGKVSYR KTAQQRHLLR QLFLQTQWPS NQDYDSIMAQ ENSTTRP00000002518/1-952 PEDDVPSKPA EQLPGKVSYR KTAQQRHQLR QLFLQTQWPS NQDYDSIMAQ bmy_07291T0/1-1007 PEDDTPSKPA EQLPGKVSYR KTAQQRHLLR QLFLQTQWPS NQDYDSIMAQ 801 850 ENSP00000312222/1-956 TGLPRPEVVR WFGDSRYALK NGQLKWYEDY KRGNFPPGLL VIAPGNRELL ENSBTAP00000023393/1-944 TGLPRPEVVR WFGDSRYALK NGQLKWYEDY KRGNFPPGLL VIAPSNRELL BACU015492/1-1007 TGLPRPEVVR WFGDSRYALK NGQLKWYEDY KRGNFPPGLL VVSPGNRELL ENSTTRP00000002518/1-952 TGLPRPEVVR WFGDSRYALK NGQLKWYEDY RRGNFPPGLL VISPGNRELL bmy_07291T0/1-1007 TGLPRPEVVR WFGDSRYALK NGQLKWYEDY RRGNFPPGLL VISPGNRELL 851 900 ENSP00000312222/1-956 QDYYMTHKML YEEDLQNLCD KTQMSSQQVK QWFAEKMGEE TRAVADTGSE ENSBTAP00000023393/1-944 QDYYVTHKML YEQDLQSLCD KTQMSAQQVK QWFAEKLGEE TRAVADTGSE BACU015492/1-1007 QDYYVTHKML YEQDLQSLCD KTQMSTQQVK QWFAEKMGEE TRAVANMGGE ENSTTRP00000002518/1-952 QDYYVTHKML YEQDLQSLCD KTQMSAQQVK QWFAERMGEE TRAVADTGGE bmy_07291T0/1-1007 QDYYVTHKML YEQDLQSLCD KTQMSAQQVK QWFAEKMGEE TRAMADTGGE 901 950 ENSP00000312222/1-956 DQGPGTGELT AVHKGMGDTY SEVSENSESW EPRVPEASSE PFDTSSPQAG ENSBTAP00000023393/1-944 GQGPCAGDPA ALHKGLGDAY VEVSENSESW EPSAPEASAE PFDTQSPQAG BACU015492/1-1007 GQGPS--DPA AVHKGMGDTY SEVSENSESW EPGAPEASSE PVDTPSPQAG ENSTTRP00000002518/1-952 GQGPS--DPA AVHKGMGDTY SEVSENSESW EPGAPEASSE PVDTPSPQAG bmy_07291T0/1-1007 GQGPS--DPA AVHKGMGDTY SEVSENSESW EPGAPEVSSE PVATPSPQAG 951 1000 ENSP00000312222/1-956 RQLETD---- ---------- ---------- ---------- ---------- ENSBTAP00000023393/1-944 PQLGKE---- ---------- ---------- ---------- ---------- BACU015492/1-1007 PQLGKEPVGL CRPLWVWGAP VAGTESSARA FAVFKAVWQQ DHVVWLLQGA ENSTTRP00000002518/1-952 PQLETD---- ---------- ---------- ---------- ---------- bmy_07291T0/1-1007 PQLGKEPVGL CRPLWVWGAP VAGTESSARA SAVSKAVWQQ DHVVWLLQGA 1001 1050 ENSP00000312222/1-956 ---------- - ENSBTAP00000023393/1-944 ---------- - BACU015492/1-1007 PGSRIRWSIV I ENSTTRP00000002518/1-952 ---------- - bmy_07291T0/1-1007 PGSRIHWGII I