KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:36 2014 Check: 00 .. Name: ENSTTRP00000004619/1-435 Len: 482 Check: 4132 Weight: 1.00 Name: ENSBTAP00000023396/1-438 Len: 482 Check: 6550 Weight: 1.00 Name: ENSP00000378651/1-434 Len: 482 Check: 3414 Weight: 1.00 Name: bmy_20780T0/1-439 Len: 482 Check: 9598 Weight: 1.00 Name: BACU002004/1-482 Len: 482 Check: 436 Weight: 1.00 // 1 50 ENSTTRP00000004619/1-435 MDSAELAGKI VYTWLTLVLG FILLPSAFGL SLGISELYMK ILVKTLEWAT ENSBTAP00000023396/1-438 MDGAELAGQI LYTWLTLVLG LILLPSAFGV SLGISEIYMK ILVKTLEWAT ENSP00000378651/1-434 MEGAELAGKI LSTWLTLVLG FILLPSVFGV SLGISEIYMK ILVKTLEWAT bmy_20780T0/1-439 MDGAELAGKI VYTWLTLVLG FILLPSAFGV SLGISELYMK ILVKTLE--M BACU002004/1-482 MDGAELAGKI VYTWLTLVLG FILLPSAFGV SLGISELYMK ILVKTLEWAT 51 100 ENSTTRP00000004619/1-435 LRIEKGVSKE SVLKSSASV- ---------- ---------- ---------- ENSBTAP00000023396/1-438 LRIETGVAKQ SVLKNSASV- ---------- ---------- ---------- ENSP00000378651/1-434 IRIEKGTPKE SILKNSASV- ---------- ---------- ---------- bmy_20780T0/1-439 FSINSFSEKE TV--NTFSVN CXYVSVY--- ---------- ---------- BACU002004/1-482 LRIEKGVSKE SVLKNSASVD VFYQLFFRNK SSEYLICKLL FCECQHTFKG 101 150 ENSTTRP00000004619/1-435 ---------- ---GIIQRDE SPMEKGLSGL RGRDFELSDV FYFSKKGLEA ENSBTAP00000023396/1-438 ---------- ---GIIQRDE SPMEKGLSGL RGRDFELSDV FYFSKKGLEA ENSP00000378651/1-434 ---------- ---GIIQRDE SPMEKGLSGL RGRDFELSDV FYFSKKGLEA bmy_20780T0/1-439 ---------- --TRIIQRDE SPMEKGLSGL RGRDFELSDV FYFSKKGLEA BACU002004/1-482 LVKFLVKRFG SGTGIIQRDE SPMEKGLSGL RGRDFELSDV FYFSKKGLEA 151 200 ENSTTRP00000004619/1-435 IVEDEVTQRF SSEELVSWNL LTRTNVNFQY ISPKLTMVWV LGVIVRYCVL ENSBTAP00000023396/1-438 IVEDEVTQRF SSEELVSWNL LTRTNVNFQY VSPRLTMVWV LGVIVRYCVL ENSP00000378651/1-434 IVEDEVTQRF SSEELVSWNL LTRTNVNFQY ISLRLTMVWV LGVIVRYCVL bmy_20780T0/1-439 IVEDEVTQRF SSEELVSWNL LTRTNVNFQY ISPKLTMVWV LGVIVRYCVL BACU002004/1-482 IVEDEVTQRF SSEELVSWNL LTRTNVNFQY ISPKLTMVWV LGVIVRYCVL 201 250 ENSTTRP00000004619/1-435 LPLRVTLAFV GISFLVIGTT LVGQLPESSL RNRLSELVHL TCCRICVRAL ENSBTAP00000023396/1-438 LPLRLTLAVI GISLFVIGTT LVGQLPRNRL KNFLSEVVHL TCCRICVRAL ENSP00000378651/1-434 LPLRVTLAFI GISLLVIGTT LVGQLPDSSL KNWLSELVHL TCCRICVRAL bmy_20780T0/1-439 LPLRVTLAFI GISFLVIGTT LVGQLPESSL KNRLSELVHL TCCRICVRAL BACU002004/1-482 LPLRVTLAFI GISFLVIGTT LVGQLPESSL KNRLSELVHL TCCRICVRAL 251 300 ENSTTRP00000004619/1-435 SGTIHYHNKQ YRPQKGGICV ANHTSPIDVL ILTTDGCYAM XXXXXXXXXX ENSBTAP00000023396/1-438 SGTIHYHNRQ YRPQKGGICV ANHTSPIDVL ILTTDGCYTM VGQVHGGLMG ENSP00000378651/1-434 SGTIHYHNKQ YRPQKGGICV ANHTSPIDVL ILTTDGCYAM VGQVHGGLMG bmy_20780T0/1-439 SGTIHYHNKQ YRPQKGGICV ANHTSPIDVL ILTTDGCYAM VGQVHGGLMG BACU002004/1-482 SGTIHYHNKQ YRPQKGGICV ANHTSPIDVL ILTTDGCYAM VGQVHGGLMG 301 350 ENSTTRP00000004619/1-435 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXL REHIADKKKL PILIFPEGTC ENSBTAP00000023396/1-438 IIQRSMVKAC PHIWFERSEM KDRHLVIRRL KEHIALKEEL PILIFPEGTC ENSP00000378651/1-434 IIQRAMVKAC PHVWFERSEM KDRHLVTKRL KEHIADKKKL PILIFPEGTC bmy_20780T0/1-439 IIQRAMVKAC PHVWFERSEM KDRHLVTKRL REHIADKKKL PILIFPEGTC BACU002004/1-482 IIQRAMVKAC PHVWFERSEM KDRHLVTERL REHIADKKKL PILIFPEGTC 351 400 ENSTTRP00000004619/1-435 INNTSVMMFK KGSFEIGGTI YPVAIKYNPQ FGDAFWNSSK YNMVSYLLRM ENSBTAP00000023396/1-438 INNTSVMMFK KGSFEIGGTI HPVAIKYNPR FGDAFWNSSK YNIVSYLLRV ENSP00000378651/1-434 INNTSVMMFK KGSFEIGGTI HPVAIKYNPQ FGDAFWNSSK YNMVSYLLRM bmy_20780T0/1-439 INNTSVMMFK KGSFEIGGTI YP----YNPQ FGDAFWNSSK YNMVSYLLRV BACU002004/1-482 INNTSVMMFK KGSFEIGGTI YPVAIKYNPQ FGDAFWNSSK YNMVSYLLRV 401 450 ENSTTRP00000004619/1-435 MTSWAIVCDV WYMPPMTREE GEDAVQFANR VKSAIAIQGG LTELPWDGGL ENSBTAP00000023396/1-438 MTSWAIVCDV WYMPPMTREE GEDAVQFANR VKSAIAVQGG LTELPWDGGL ENSP00000378651/1-434 MTSWAIVCDV WYMPPMTREE GEDAVQFANR VKSAIAIQGG LTELPWDGGL bmy_20780T0/1-439 MTSWAIVCDV WYMPPVTREE GEDAVQFANR VKSAIAIQGG LTELPWDGGL BACU002004/1-482 MTSWAIVCDV WYMPPMTREE GEDAVQFANR VKSAIAIQGG LTELPWDGGL 451 500 ENSTTRP00000004619/1-435 KRAKVKDTFK EEQQKNYSKM IVGNGSLNS- -- ENSBTAP00000023396/1-438 KRAKVKDTFK EEQQKNYSKM IVGNGSLKSE LD ENSP00000378651/1-434 KRAKVKDIFK EEQQKNYSKM IVGNGSLS-- -- bmy_20780T0/1-439 KRAKVKDTYK EEQQKNYSKM IVGNGSLNSE LD BACU002004/1-482 KRAKVKDTYK EEQQKNYSKM LVGNGSLNSE LD