KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:37 2014 Check: 00 .. Name: ENSP00000244709/1-234 Len: 313 Check: 3536 Weight: 1.00 Name: ENSBTAP00000023397/1-232 Len: 313 Check: 2467 Weight: 1.00 Name: ENSTTRP00000012460/1-218 Len: 313 Check: 8511 Weight: 1.00 Name: bmy_11334T0/1-254 Len: 313 Check: 4779 Weight: 1.00 Name: BACU017997/1-181 Len: 313 Check: 3852 Weight: 1.00 // 1 50 ENSP00000244709/1-234 --MRKTRLWG LLWMLFVS-- ---------- ---------- ---------- ENSBTAP00000023397/1-232 --MRKARLWG LLWMLFIE-- ---------- ---------- ---------- ENSTTRP00000012460/1-218 ---------- ---------- ---------- ---------- ---------- bmy_11334T0/1-254 MAPEASHLLL VLLVLLAAGE ETVEGAKGVS TSKPRTLAQD SRYTIRDDPS BACU017997/1-181 MAPEASHLLL ALLVLLAAGE ETVEGAKG-- ---------- ---------- 51 100 ENSP00000244709/1-234 ---------- ---------- ---------- ---------- --ELRAATKL ENSBTAP00000023397/1-232 ---------- ---------- ---------- ---------- --EIQAAAEV ENSTTRP00000012460/1-218 ---------- ---------- ---------- ---------- ---IQTASEL bmy_11334T0/1-254 SGFTNVTMAE LKEKDSGSYQ CATKGSKGGA ILYKKIHLLE FPEIQAASEL BACU017997/1-181 ---------- ---------- ---------- ---------- --EIQAASEL 101 150 ENSP00000244709/1-234 TEEKYELKEG QTLDVKCDYT LEKFASSQKA WQIIRDGEMP KTLACTERPS ENSBTAP00000023397/1-232 FEEKCTLAEG QTLKVSCPTN TNIYSNSQKA WQRLKDNGEV QTLAITE--- ENSTTRP00000012460/1-218 PEEKCTLAEE QTLKVDGPIT HDTDSNSRKA WQSLKDKGEV QTLAITERVS bmy_11334T0/1-254 PEEKCTLAEG QTLKVGCPVT HDTDSNSWKA WQSLKDKGEV QTLAITERVS BACU017997/1-181 PEEKCTLAEG QTLKVGCPVT HDTDSNSRKA WQSLKDKGEV QTLAITERVS 151 200 ENSP00000244709/1-234 KNSHPVQVGR IILEDYHDHG LLRVRMVNLQ VEDSGLYQCV IYQPPKEPHM ENSBTAP00000023397/1-232 -GSSQVRVGK YFLEDIPSEG MLQIQMANLQ VEDSGLYRCV ILG-PSDPII ENSTTRP00000012460/1-218 GEFSQVQVGR YFLKDVPSES MLHVRMTNLR VEDTGLYQCV IYQPPKDPII bmy_11334T0/1-254 GEFSQVQVGR YFLKDVPSES MLHVRMTNLR VEDTGLYRCV TYQLPKDPVI BACU017997/1-181 GEFSQVQVGR YFLKDVPSES MLHVRMTNLR VEDTGLYRCV IYQPPKDPII 201 250 ENSP00000244709/1-234 LFDRIRLVVT KGFSGTPGSN ENSTQNVYKI P---PTTTKA LCPLYTSPRT ENSBTAP00000023397/1-232 LFHPVRLVVT KNSLGTPASD EYPCQVSVQN PTPLPVTTKL RPRPRPRPKP ENSTTRP00000012460/1-218 LFYPVHL-VT KNPSGTPASG ENPTQNFAQI PTLPPITTN- YSKLHPSPRT bmy_11334T0/1-254 LFYPVYL-VD QDSTESP--- ---------- ---------- ---LFP---- BACU017997/1-181 LFYPVHL-VD QE-------- ---------- ---------- ---------- 251 300 ENSP00000244709/1-234 VTQAPPKSTA DVSTPDSEIN LTNVTDIIRV PVFNIVILLA GGFLSKSLVF ENSBTAP00000023397/1-232 VTQPIPTSAD RLSSPGFTVT PTNVTHVNRA PGISIIIPAA CGLLSKTLVF ENSTTRP00000012460/1-218 VTQPLPTSAT SVSSPGLEVT PTNVTDVTRA PGTSTVIPVE HGLLSKSLVF bmy_11334T0/1-254 ---------- ---------- --------RA PGTRIAIPVA XGLLSKSLVF BACU017997/1-181 ---------- ---------- ---------A PGTRIVIPVA RGLLSKSLVF 301 350 ENSP00000244709/1-234 SVLFAVTLRS FVP ENSBTAP00000023397/1-232 IGLFAVTHRS FAS ENSTTRP00000012460/1-218 IALFAVTQRS FAS bmy_11334T0/1-254 IALFAVTQRS FAS BACU017997/1-181 IALFVVTQRS FAS