KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:20:39 2014 Check: 00 .. Name: ENSP00000418983/1-652 Len: 667 Check: 4094 Weight: 1.00 Name: ENSBTAP00000023426/1-651 Len: 667 Check: 3601 Weight: 1.00 Name: ENSTTRP00000010221/1-644 Len: 667 Check: 6705 Weight: 1.00 Name: bmy_05852T0/1-574 Len: 667 Check: 1903 Weight: 1.00 Name: BACU018041/1-652 Len: 667 Check: 9027 Weight: 1.00 // 1 50 ENSP00000418983/1-652 MENPRCPRRP LAEKKARSLD RPQAPGKGSE SWDCHWLSLP TAPSRKALHW ENSBTAP00000023426/1-651 MEPPWSPRKP LSWRRAKSLD RLQNAKKDSE SWDCQGPSLP TGPFRGGLCR ENSTTRP00000010221/1-644 MEPPRGPRKP LSGRRARSLD RLQNPQKDSE SRDCWCISRP TSPSRRLLRR bmy_05852T0/1-574 MEPPRGPRKP LSGRRARSLD RLQNPQKDSE SCDRRCISRP TSPSRRMLRR BACU018041/1-652 MEPPRGPRKP LSGRRARSLD RLQNPQKDSE SCDRRCISRP TSPSRRMPRR 51 100 ENSP00000418983/1-652 TTSDWARHSD SPAPSAEAHC TTAAAPTPEE TGDFLPSEQR PSQDTKK--- ENSBTAP00000023426/1-651 TASDGARCLK SPVQSVEAQD TTAAAPSPEE TKDLL-SEQR PLQDAKKDKA ENSTTRP00000010221/1-644 TASDGAKCPK SPAQSAEAQR TTAAALSPEE TRKFLPSEQR PPQDTKK--- bmy_05852T0/1-574 AASDGARCPK SPAQSAEAQG TTTAALSPEE TREFLPSEQR PPQDTKKDKA BACU018041/1-652 AASDGARCPK SPAQSAEAQG TTTAARSPEE TREFLPSEQR PPHDTKKDKA 101 150 ENSP00000418983/1-652 ------GWLK TMLNFFVRTG PEEPREKASR RPRGKEGISQ HPEPLEAAGE ENSBTAP00000023426/1-651 QWQAPQGWLR FVVNLFFRTG PEEPKEKTNK KAKGKEGPSE PTETPESLGE ENSTTRP00000010221/1-644 ------GWLK TMKNFVFGTS PEEPKEKTNK RAKGKEGFPE PAETPETPGE bmy_05852T0/1-574 QCRAQQGWLK TMMNFLFGMG PEEPKEKTNK RAKGKEGLPE PAETPETPGE BACU018041/1-652 QCRAQQGWLR TMMNFLFGMG PEEPKEKTNK RAKGKEGLPE PAETPETPGE 151 200 ENSP00000418983/1-652 PALRKKAHHD KKPSRKKQGH KKHAAEVTKA AQDQEARGRE EGLSKAAAAL ENSBTAP00000023426/1-651 PAPRKKA-HS KKASRKKHSQ RKRCAEEARG ARDQEAEGQE ---AKAAEAS ENSTTRP00000010221/1-644 PAPRKKA-HS KKASRKKHGH KKHGAEETKG IRDQEAKGQE ---AKMAGAS bmy_05852T0/1-574 PAPRKKA-HS KKASRKKHGH KKHGAEETKG TRDQEAKGQE ---TKMAGAS BACU018041/1-652 PAPRKKA-HS KKASRKKHGH KKHGAEETKG TRDQEAKGQE ---TKMAGAS 201 250 ENSP00000418983/1-652 RSGEADLGPA RRGGEDSD-H QSFLIKVDGT GALDVSPHAT GHQQEEELKK ENSBTAP00000023426/1-651 LSEGADLGPA ARGGEVSDFH QFLLLEGGGA RVWKVSFQAV GHQQEDKLRK ENSTTRP00000010221/1-644 CCEEADLGPA AGGGEVSDLP QFSLLEGGGA GVRKVSSQAT GRQGEEELGK bmy_05852T0/1-574 CCEEADLGPA AG-------- ---------- ---------- ---------- BACU018041/1-652 CCEEADLGPA AGGRKVSDLH QFLLLEGGGA GVRKVSSQAT GHQCEEELGK 251 300 ENSP00000418983/1-652 PDQDAIIQMI VELLKRVGDQ WEEEQSLASQ LGVALPNPAP AVRKKSQEKK ENSBTAP00000023426/1-651 LDKDIIIQKI VELLQKVGDQ WEDEQHQALQ SVVTPRNPAP VVKKKSQEKM ENSTTRP00000010221/1-644 PDKDTIIQKI AGFLKKVGDQ WEEEQHQASQ PEMAPQIPAP GFRKKPQERK bmy_05852T0/1-574 --EDTIIQKI VELLKKVGDQ WEEEQRQAPQ PEVAPQNPAP VFRKKSQERK BACU018041/1-652 LDKDTIIQKI VEFLQKVGDQ WEEEQRQAPQ PEVAPQNPAP VFRKKSQERK 301 350 ENSP00000418983/1-652 TSLKRTSKTN PKKHGSEEAK R-GAADVSSP EAWPPKKSSF LPL-CVSGHR ENSBTAP00000023426/1-651 SSLKRA--FS FKKYVSEEPK RAGAAHVSSA ESRQPKRPNF LPL-CVGGHR ENSTTRP00000010221/1-644 SSLKKA--FS HKKHGFEEPK RAQAADVSSP ESRPPKRPMX XXXXXXXXXX bmy_05852T0/1-574 SSLKKA--FS HKKHSSEEPK RARAADVSSP ESRPPRRPSF LPL-CVGGHR BACU018041/1-652 SSLKKA--FS HKKHSSEEPK RARAADVSSP ESRPPRRPSF LPL-CVGGHR 351 400 ENSP00000418983/1-652 PSISSSYGLE EPKVQEAPST EAGAPGPSVL PTPSESQEPG EELPLDRASE ENSBTAP00000023426/1-651 PSSSSLPGVE EPEVQEAVTT DGGDPSPFEL CTPAESGGPD KDLQQDRATE ENSTTRP00000010221/1-644 XXXXXXXXVE KPEVQETLST DGGDPSPFEL SNPAGSRGPE EDLQLDRASE bmy_05852T0/1-574 PSSSSSPGVE EPEVQEALST DE-------- ---------- ---------- BACU018041/1-652 PSSSSSLGVE EPEVQEALST DGGDPSPFEL SNPAGSRGPE EDLHLDRASE 401 450 ENSP00000418983/1-652 YKEFIQKIIS MLQDAEEQQG EEQPQVQQEE VGVENPAPHC RRKSQEKRSS ENSBTAP00000023426/1-651 FKEFIQKIIA LLQDAEEQCR DKQLQVQEPE VAVENLAPAY RKKCQERKSN ENSTTRP00000010221/1-644 FK-FIQEIMD LLQDAEEQGG DKQLQVQEAQ VAVGNLAPTS RKKSQEKKSS bmy_05852T0/1-574 ---FIQKIID LLQDAEEQGG DKQLQVQEPE VAVGNLAPTC RKKSQEKKSS BACU018041/1-652 FK-FIQKIID LLQDAEEQGG DKQLQVQEPE VAVGNLAPTC RKKSQEKKSS 451 500 ENSP00000418983/1-652 FRRAFYHKKH TSKEPRRAGA AGAASPEARR PKRPSFLPLC VGGHRPSTSS ENSBTAP00000023426/1-651 FRKAFY-KKH SSKDPKRAGA AGAASPDSRP PKKPSFLPLC VGGHWPSVSS ENSTTRP00000010221/1-644 FRKAFSHKKH GLKEPKRGAA AGAASPESRP SKRPSFLPLC VGSHRHSISS bmy_05852T0/1-574 FRKAFSHKKH GFKEPKRGGA AGAANPDSRP PKRPSFLPLC VGGHRPSISS BACU018041/1-652 FRKAFSHKKH GFKEPKRGDA AGAASPDARP PKRPSFLPLC VGGHRPSISS 501 550 ENSP00000418983/1-652 SLDPEDLECR EPLPAEGEPV VISEAPSQAR GHTPEGAPQL SGACESKEII ENSBTAP00000023426/1-651 DSDPEDLEFQ GSPPTEGEPV GAPEALSQAR SHKPEAGRQP DGANESKELI ENSTTRP00000010221/1-644 NPDLEDVEFQ ESSPAEGGPV GASEAPSQAR SHKPEAGPQP HGANESKELI bmy_05852T0/1-574 NPDPEDLEFQ ESSPAEGGPV GSSEAPSQAR SHKPEAGPQP DGANESKELI BACU018041/1-652 NPDPEDLEFQ ESSPAEGGPV GSSEAPSQAR SHNPEAGPQP DGANESKELI 551 600 ENSP00000418983/1-652 IQKLVALLQE VDGQLGQQIR RHPSFKRFFY EFSDSSLSKL VATLRSQVAH ENSBTAP00000023426/1-651 IQELVALLQE VDGQLGKQIK RHPSFKKFLY EPSVSSLRKL VATLRSRGAH ENSTTRP00000010221/1-644 IQKLVALLQE VDGQLGEQFR QHPSFKKFFY KLPDSSLRKL VATLRPQEAH bmy_05852T0/1-574 IQKLVAILQE --------IR QHPSFKKFFY KLSDSSLRKL EATLSTQEAN BACU018041/1-652 IQKLVALLQE ADGQLGEQIR QNPSFKKFFY KLSDSSLRKL VATLSTQEAN 601 650 ENSP00000418983/1-652 SSKLDRNRAR RLYQFDVSLA NKFAGSNSHA MCILMGLRDH Y---NCTQFP ENSBTAP00000023426/1-651 TTE-----PK RTYPFVFGLG NQGAGNNYHP VLSLTGL--H YRRPSYGQFP ENSTTRP00000010221/1-644 STE-----PK RPYPFVFGLD NKRAGSNHQA VLSLTGL--H YRRPNFSQFP bmy_05852T0/1-574 STE-----PK RPYPFVFGLA NKCAGSNYQA VHSLTGL--X YRRPSFSQFP BACU018041/1-652 STE-----PK RTSPFVFGLA NKCAGSNYQA VHSLTGL--H YRRPSFSQFR 651 700 ENSP00000418983/1-652 YREDQPNITS PKVESPD ENSBTAP00000023426/1-651 YEEAQQNITS SQIQSPD ENSTTRP00000010221/1-644 YREDQQNDTN PQSQSPD bmy_05852T0/1-574 YREDQQNDTN PQSQSPD BACU018041/1-652 YREDQQNDTN PQSQSPD